Haes025002.1
Basic Information
- Insect
- Hemithea aestivaria
- Gene Symbol
- -
- Assembly
- GCA_947507615.1
- Location
- OX382349.1:10450498-10455599[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.17 13 7.1 4.3 2 19 285 302 285 307 0.90 2 19 1 79 4.6 1.8 2 23 311 332 310 332 0.89 3 19 0.081 6.3 8.1 1.1 1 23 337 360 337 360 0.94 4 19 0.011 0.83 10.8 0.8 2 23 410 431 409 432 0.95 5 19 0.0057 0.44 11.7 1.5 1 23 438 461 438 461 0.96 6 19 0.61 47 5.3 0.3 2 19 466 483 465 485 0.93 7 19 3.9 3e+02 2.8 10.7 1 23 494 517 494 517 0.96 8 19 4.9 3.8e+02 2.5 0.8 1 12 521 532 521 544 0.80 9 19 0.071 5.5 8.3 2.6 2 23 556 577 556 577 0.97 10 19 0.0066 0.52 11.5 0.7 1 23 584 607 584 607 0.96 11 19 1 78 4.6 0.2 2 23 613 632 613 632 0.79 12 19 5.3e-05 0.0041 18.1 4.6 2 23 640 661 639 661 0.97 13 19 6.5 5e+02 2.1 0.2 2 23 669 691 668 691 0.88 14 19 0.19 15 6.9 1.9 1 20 697 716 697 718 0.92 15 19 0.016 1.2 10.3 0.6 1 23 736 759 736 759 0.97 16 19 0.018 1.4 10.1 0.4 1 21 765 785 765 786 0.94 17 19 0.65 51 5.2 2.5 2 23 792 813 792 813 0.97 18 19 0.01 0.8 10.9 0.9 1 23 819 842 819 842 0.96 19 19 6.3e-05 0.0049 17.9 0.8 2 23 848 870 847 870 0.96
Sequence Information
- Coding Sequence
- ATGAGGCCAATCTCGGAAACTGTGATGCCAATTTTGATGGGTGCGACACCGTTTAAAACAAAACCAAAAGATGTAACTTCTGAGACAAATTATATACACAATGACATGATGAACGATGAGATGATAAATGATGATGATGAAACTGAACAGTTGATATCAGTCGGTGCCAACATTGTCTTTAATCCATTGCCAGAAGAGAACCCTCGTTCAGCAGAGTACTCAAGGCCAGTCCTGCATCACGTGGGCTTCCTCAAACAGAAGCTTGTGTCAGTCCTGTACTGCGAGCAGTTCTGTGCTCTCTGCTGCGACTCGGACAAGCCTCTCAAGCTACTCCGGGAACAAATACTCATCATCACTGACAACTGGACGCAGACTACTACACTCAAACAACTCTACCAATATGTTTTACATCAGAAAGCGGAGCCAGCAAGTGAATACATATGTACAGATTGTTCAGAACAATTAAAACAATCGTACATCTTCATAAAATACTCCAAACTAACGACAAAGCTCTTAGAGTCGTACATCAACGACTTGAAGTTAATCTCCGATGAAAACGAGCATATGGTCGCTAATTACATTGAAAAAGATAAGTTTAGATTCACCGTCATGTTACTGAAAGGGCAACAAGCCCAGAAATATTTACCTAATGAGAAAAAAAAGACGAATGAAAAAGAAATTACAAATGACAATCTTAACAAAACGCAGGAGACTTTTGGATGTGAAGAAGGTATTGAAATTCCAGAAACATCGAAAACTATAAATGCCGAACTAATTCCATTGGAAATTCCCGATGGAACATTCCAACCAACGTCTATTGTAACCAGAAAACGAGGAGTAAAAACTAGACCAAGATGTGAAATATGCTCAAAAGTATGCAATAGTCAGTCGAAATTATTAGAACATTGCACACGAATTCACTTAAAAGTCCGCTGTAAAATCTGTCACACATTCATTGACGAGAAAGATTTCCAACAACATTTATCAACGGAACATAAAAACAAAGTACACTTCTGTAAATTATGCGTGCGGCCATTTTATAATGCGGACAGTGTGTTCATACACAAGAAAATTGTACACGAAAATTCCGTTGAAAGTGTGCTTTGCTTGGCTGACTATGGTTTGGATCTCAATTGCCCGGCCTGTGACGACATAACGTCGTGCATTCATAAAAAATACTTGTATTCAGTCATGGACCACAAACTCAATCACAAGAGTGCAAAAGTAAAGTGTCCGGATTGCGACTACGTCACAAGATGGAAGACCGAGTTACTGACGCACGTTAACAAACACCACCTGAAACGCGATCTTTATATTTGCTCGCAATGTGGGAAGCAGTTTTTCGACAAAAAAGCTATGGATGAGCACAATAGGAAGTATCACTCTAGTGTGTGGTATTGTTCATATTGCGAGTGCGTGTGCTCGAGTGTCGGGGCGCTGGCGGCGCACGAGGCAGACTGTAGCGCAACAACACGAGCGCACTGCTGCCAATACTGCGCGGCTTCCTTCCACACATTCAAACTGCTGCAGAAACACCACAACACGCGCCACAAGGAGACCTTCCCCTGCAACTTCTGCAACAAACTCTTCCAAACAGAAAACAGGAGAATATTTCATATAAACAAGGTACACAGTCTCGTGGACAAGCCAAGTCGTCAGAAAGCCACATGTAAAATGTGCCACGATGTTTTCGACCTGAGACAAGAATTGATACATCACATAAAGATACATCAAGGTCCCGACGCCAAATACAATTGCAACCTGTGTGAGACCGAGTTCGAAAGTTTGGAGACACTCCAATCGCACAACAAGAGCCAGCATGATAATACTACCGCTGTTTGCAACATCTGCGGTAAAAAAATTTACCAGAACTTACTCGCACATTTACAAGAACACGAGTTATACGATGCTAAAGTGAGTTGTGAAGATTGTGGGAGATCCTTCACTAATATCAAGCATCTTCATCGTCACAGCAAGACACATGTCTTGACCAAGAAATCTCTCAAATGCAAGTTATGTCCATACGTCGCAGGCAAACTGACGTATTTAGATGGTCACGTGAACAAATACCATCTCAATACTAAACCGTATGTATGCGACAAGTGCGGCACACGATACCACGGGAAGCATTATTTTTTGGTTCACTCGAAGATATGTCAGAATAAGGCTGGTGACAAAATCAAGCTACTTCCGCGTTACAAAAAGTACAAGTGCACATTATGTCCCTACGTTGCTGCGCATCGTGAGTATTTAGATACTCATGTGAACAGAGACCATGCCAAGATTAAACCGTACGCATGTGATAAGTGCGAGAGACGGTTCCACGGGAAACGGTATTTGGTGGCTCATGTAAAGATATGTCAGAACAAGCCTCGCTGTGACGTGTGCAACAGAGAAATGTGTTCCATGGAAAGTTTGAAGATTCACAAGAACAGTCACGTGGCCGAGAAACAATTCAAGTGCGAGGAGTGCGGCAACATGTTTGTGTCGGCCGAGGCGAGAGGGAGACACCACAACAAACAACATGCTCCCAAAAACATTCCCTGCTCGCACTGCCCTTTGAAATTTGCCACCTCGAGAAAACTTCAATGGCATATGAATATTTTTCATCAAACTATAATTGTTAATGAAACGTAA
- Protein Sequence
- MRPISETVMPILMGATPFKTKPKDVTSETNYIHNDMMNDEMINDDDETEQLISVGANIVFNPLPEENPRSAEYSRPVLHHVGFLKQKLVSVLYCEQFCALCCDSDKPLKLLREQILIITDNWTQTTTLKQLYQYVLHQKAEPASEYICTDCSEQLKQSYIFIKYSKLTTKLLESYINDLKLISDENEHMVANYIEKDKFRFTVMLLKGQQAQKYLPNEKKKTNEKEITNDNLNKTQETFGCEEGIEIPETSKTINAELIPLEIPDGTFQPTSIVTRKRGVKTRPRCEICSKVCNSQSKLLEHCTRIHLKVRCKICHTFIDEKDFQQHLSTEHKNKVHFCKLCVRPFYNADSVFIHKKIVHENSVESVLCLADYGLDLNCPACDDITSCIHKKYLYSVMDHKLNHKSAKVKCPDCDYVTRWKTELLTHVNKHHLKRDLYICSQCGKQFFDKKAMDEHNRKYHSSVWYCSYCECVCSSVGALAAHEADCSATTRAHCCQYCAASFHTFKLLQKHHNTRHKETFPCNFCNKLFQTENRRIFHINKVHSLVDKPSRQKATCKMCHDVFDLRQELIHHIKIHQGPDAKYNCNLCETEFESLETLQSHNKSQHDNTTAVCNICGKKIYQNLLAHLQEHELYDAKVSCEDCGRSFTNIKHLHRHSKTHVLTKKSLKCKLCPYVAGKLTYLDGHVNKYHLNTKPYVCDKCGTRYHGKHYFLVHSKICQNKAGDKIKLLPRYKKYKCTLCPYVAAHREYLDTHVNRDHAKIKPYACDKCERRFHGKRYLVAHVKICQNKPRCDVCNREMCSMESLKIHKNSHVAEKQFKCEECGNMFVSAEARGRHHNKQHAPKNIPCSHCPLKFATSRKLQWHMNIFHQTIIVNET
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -