Haes018661.2
Basic Information
- Insect
- Hemithea aestivaria
- Gene Symbol
- -
- Assembly
- GCA_947507615.1
- Location
- OX382353.1:6442746-6458547[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0004 0.032 15.3 1.0 1 23 242 264 242 264 0.99 2 13 0.0002 0.016 16.3 6.7 1 23 271 293 271 294 0.95 3 13 0.072 5.6 8.2 2.2 1 23 298 320 298 320 0.97 4 13 0.26 20 6.5 2.0 1 23 325 348 325 348 0.96 5 13 0.0029 0.23 12.6 0.2 1 23 352 375 352 375 0.94 6 13 0.48 38 5.6 0.1 2 20 388 406 388 408 0.82 7 13 1.7 1.3e+02 3.9 0.3 2 23 462 484 461 484 0.94 8 13 0.026 2 9.6 1.0 2 20 500 518 499 521 0.89 9 13 1.4e-05 0.0011 19.9 1.7 1 23 527 549 527 549 0.99 10 13 1.4e-05 0.0011 19.9 2.5 1 20 556 575 556 577 0.95 11 13 1 78 4.6 0.8 9 23 577 591 576 591 0.96 12 13 1.1e-05 0.0009 20.2 5.1 1 23 598 620 598 620 0.98 13 13 9.1e-05 0.0071 17.4 1.3 1 23 626 649 626 649 0.93
Sequence Information
- Coding Sequence
- ATGTGTCTCACAACGGATCATACAATGTTTCCAATGAAGTATTATAACTTGGAAGCACCTTTTGAGAGGTTCACCAATATATCTCTTAAAGATGACGAATTACCGCAACACCTGTGTTCAGAATGCGCTCAAAGATTACAAAATGCAGATCGGTTTAGGAGCAGAAGCATTCAAGCTAACTCATTGCTACTTGATCTAGTTAAAAACAAAAACCTAACAAAACAATCATTAAAATCAATAGACCGCGATTCACTAAATCTCACTACACTATCTATAAAACACAACTTACCAGACAAATACGACTTAGAAATAGAATTCGTAGAACCCAAACAAGAACCCATCGAAGCCATAGAACCCATAGAAGAGAAGGAACAGAATATAGAAGATAACATTTTACCTCTAGAAAGTGAAATCTTTGCCGATGACATTAAAGACTTTGATTTTTCTGATGGCGAAGACAAAACTTATACTACTAAGACGGAGGATTTTGACTCAGAAGATAGTGTGCCTCTAGAATTAACTAGGAAGAAAAAGAAGAAAGAAAAGGCTAAGACTAAGAAGGTCAGGAAAAAACCAGTAGAAACGAAGATAGACAGACGTCGCAAGCCCTTTCTCAACCAAGACCTCAACGAGACCCTATTCACAATCACCAACCTGACAATAGAACAGCAGATCGATGAGATTCAAAAGCGACAGTATACTGATAACTACAAACATGCGTTGTACAAGTGCGAGGAATGTTACAAAGGGTTTCTGGATCAGAGCGCTTATAATTCGCACATGAGTCGGCATACTGATGAATGCGGTGAATACCGCTGCGAAATATGCAAGACCCACTTCAAGCAATCCCACGCATTACGCAAGCATATAACCGCGCACCACACGCAGCGGTTCAGCTGCAAGCAGTGTCCTTATGTGACCACGCACAGGCAGACGGCGCGCCTGCACGAGAGGTGGCATAAAGGGACCAAGTACCGCTGTCCGCACTGTCAGGACGAGTTTGTTAAATTCACAACGTACATGGGCCACGTCCGAATAAAGCACCCTTCAGACTTCGTGTGCGAGTTATGCGGGTATTCCTTCGTAAGCGCCAAAGGGATAGAGCTGCATAAAAAGTTGAAGCACAGAAACGAAACTGGGCCGGTGCCATCAGACGGTCCTTATTGCAACGAGTGTGGAGTTAGATTTGCATCAATGGAGGCTCATAGGAAACATCTAGCTGTGTCTGCCAAACATTCTAGCAAGGAGAACAGAGAGGCGAATAAAGCTAATAAAGGACAAAGAACTAGAGAAATACGAGAGAAGCTGTCAAAACAAGAGTCAGAACAGGACGACCCGAGAAAAGTGTATCCGAGCCAACTTAGAAAAGCAGAAGGACCAATACCCTGTGAACAGTGCGGAGTACAATTAGAAGATTCGAGAGCGTACCACGGCCACTTCAGACGGATGCATCCGGATAAAAACAGGACTAATTACCCTTCAATGAAGAGTCCTTGCATGTGTGAACTGTGCGGACGGATATTCCAGAGCTACGCCCTCCTAAAAGACCACACATGGACGCACACCGGTGAGCGTCCTTTCAAATGCGACCAGTGCGACAAATCGTTCCGAATGAAGCAGCGATTAGTCGCACACCGACGCGTACACAGCCTAGTTAAAGCTAGCTACGTGTGTTCTGTGTGCGGGAAGCATTTCTCTACACATAGCAACCGGCAGAGGCATATGTTTTCGTTCCGAAGGAAGCAGCGATTAGTCGCACACCGACGCGTGCACAGCCTAGTTAAAGCTAGCTACGTGTGTTCTGTGTGCGGGAAGCATTTCTCTACGCATAGCAACAGACAGAGGCATATGTTTATCCACACCGGCCTCAAACCGTTCAAATGCGAGATGTGCGGCAAAGGGTTCAAACACGCGAGTGAGAAACGAGCTCATGTGACTTACGTCCATCTTAAGAAACCGTGGCCGAAGAGAACTAGAGGGAAACGACTTAGACAGGTATGA
- Protein Sequence
- MCLTTDHTMFPMKYYNLEAPFERFTNISLKDDELPQHLCSECAQRLQNADRFRSRSIQANSLLLDLVKNKNLTKQSLKSIDRDSLNLTTLSIKHNLPDKYDLEIEFVEPKQEPIEAIEPIEEKEQNIEDNILPLESEIFADDIKDFDFSDGEDKTYTTKTEDFDSEDSVPLELTRKKKKKEKAKTKKVRKKPVETKIDRRRKPFLNQDLNETLFTITNLTIEQQIDEIQKRQYTDNYKHALYKCEECYKGFLDQSAYNSHMSRHTDECGEYRCEICKTHFKQSHALRKHITAHHTQRFSCKQCPYVTTHRQTARLHERWHKGTKYRCPHCQDEFVKFTTYMGHVRIKHPSDFVCELCGYSFVSAKGIELHKKLKHRNETGPVPSDGPYCNECGVRFASMEAHRKHLAVSAKHSSKENREANKANKGQRTREIREKLSKQESEQDDPRKVYPSQLRKAEGPIPCEQCGVQLEDSRAYHGHFRRMHPDKNRTNYPSMKSPCMCELCGRIFQSYALLKDHTWTHTGERPFKCDQCDKSFRMKQRLVAHRRVHSLVKASYVCSVCGKHFSTHSNRQRHMFSFRRKQRLVAHRRVHSLVKASYVCSVCGKHFSTHSNRQRHMFIHTGLKPFKCEMCGKGFKHASEKRAHVTYVHLKKPWPKRTRGKRLRQV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -