Haes005469.1
Basic Information
- Insect
- Hemithea aestivaria
- Gene Symbol
- -
- Assembly
- GCA_947507615.1
- Location
- OX382334.1:8130201-8166786[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.033 2.6 9.3 3.1 1 23 282 304 282 304 0.98 2 16 3.4 2.6e+02 3.0 2.8 1 23 337 360 337 361 0.93 3 16 0.0083 0.65 11.2 0.3 2 23 373 395 372 395 0.97 4 16 2.2 1.7e+02 3.6 0.5 1 23 410 433 410 433 0.95 5 16 0.00013 0.01 16.9 2.2 1 23 446 468 446 468 0.96 6 16 0.00092 0.072 14.2 1.0 1 23 474 496 474 496 0.97 7 16 0.00011 0.0086 17.1 0.5 2 22 502 522 501 522 0.95 8 16 0.00048 0.037 15.1 1.7 1 23 842 864 842 864 0.98 9 16 0.23 18 6.6 0.4 3 23 898 919 897 919 0.95 10 16 0.014 1.1 10.5 0.5 2 23 932 954 931 954 0.97 11 16 0.063 4.9 8.4 0.4 1 23 965 988 965 988 0.98 12 16 6.9e-05 0.0054 17.7 4.0 1 23 1002 1024 1002 1024 0.96 13 16 0.0014 0.11 13.6 2.1 1 23 1030 1052 1030 1052 0.96 14 16 1.9e-05 0.0015 19.5 1.9 2 23 1058 1079 1058 1079 0.97 15 16 6.2e-07 4.8e-05 24.2 0.6 2 23 1085 1106 1085 1106 0.97 16 16 0.00027 0.021 15.9 1.4 1 23 1112 1135 1112 1135 0.93
Sequence Information
- Coding Sequence
- ATGAAGCAACCTAAGGCTGTATATAACCAATCAGAAGATTTAGATATGGCAGCACCCATCCAAACTCCTTACATGAAAAATCCACATATTATAATAGTCAACATTCCAAAAGACGATGATATTGAAATGCTAGAATCTCCCAAGCTCGATGAAATTGATGAACAATTTAATGAAAATAATACAATAGATGTAGCAGATATAAAAATAGAATATTTGAATACTGACAATGAAAATGAATCATTAAAAAAGTTTGATGTTTCAACAGTAAAAAGTGAAAGTATAGAACCAGTATTTAAAATTTTTCCTGATGAAGAACTAGGAACTGATGATGATTTAAATGACTTAGATTATACTGTTAAAAGTAACTTGGAATCTACAAATTCAGATAGTGATAATTCAAATATGGAAGTAGACATATTGGAAACTAAAAAAAATAAACATAAAAGAAAACCTATTAATGTAGAAGATCTAAAAGCTAAATTGAAAGAGAAATTCAAAAGATGTGGAACTGTTAAGGATGAGAAAGGAAATGTTATTGATGTGGATATAGTAATGAATAATTTGGTTGTGTCACGTCTGTTTCCAATAAAGAAACTATGCTTAGGTCCTGGCCCATTCAGTCCGTTAGCTATTCGTAAACTGTCGGAGATATGCAACACAGCTTCTCTATTCGATACATTACGCCTTAATAATAATGAAGAGATGCTAGCAGAATTTGAGAAACGTCGACTGAGTTTGAACTATACAAAACACCTGCACCGATGTGAGAGTTGTCTTAAAGGATTCCTGCATCGGCCCATGCTGGACTTTCATATTAAAACTAGTCATAATCCAGCGATGCCATTCGAATGCTCAATATGTCACATGCGCATGAGTACGCGGGACAAACTGAGTTCCCATACATCCACCCACAGAAATGTATTGAAATGCAAGTTGTGCGCTTTCTCTGCAGGTAAAAGGACAAGAACATCCCTAGCGGCACATATAAACTCAGCGCACGAGGCGCGGCACGCGTGCGCTCTCTGCGCCGCCGCTTTCATGACCGCACACGGGTTAGAGGTGCACCATTTGAAGAAACATCACGGTGAACAGTTTGTGGAAAGCGAAGACAATAAAAAATGTGAAGAATGCAACATACTATTCATATCAAACGAAGTGTATGTGAAGCATATGAGAGTAACACACAAAGTGCGCGGCGGACGATCTCGTGGGAATATGATATACGAATATTCTTGTCGTGTGTGTGAGTGGAAGGGGTCAAGCCGTCGGTTGCAAATGGACCACTACCAGTCGGAGCATCCTGATGCTGACTCCAAGTTTCTACACAGCGGCAGCTATTTGTGCCACGATTGCGGACAGCGATTCAAGTCAATAACAGCATACCAGGACCATATGAACAAGCACACCGGCACGAGGCCGTATGCTTGCACTAAATGTTCGAAGGCGTTCTTCAGCCGGCTCAATCTAGACTCCCATATATTGAGGCACTTGCCGCCGACTAAGGAATGTCCACACTGCGGGAAGAAGTTCACTACTGGCACTGGATTGAGCTCACATATCCGAAGTGGATCCAGGACCAAATTTTGTTCTGAATGTCTGTACAAGCTGAAGAAATGCTTTGAGTTCAAAAAGTATTGTCAGCTTGCCGCTGAAAAACTTAAATCATGGGGTAGGCAACCTAAGGATAAAAAAAAGCCAAAGCACCTTCTCTACACAGAAATGCCCGAGGAACAACTCAGTCTATGCAATAAGAATAATTATAAGATATACTTCTACCAAACAGGAGATGTGGATATAGCCGCTCCTATCCAAATATCTAGCTCTAAGAACCCACATATTGTAACAGTCAACATTCCAGCTGATTCAGCACCAATTGAAGAAGACAGTATCGAAGAACCAAATCTGTGCCCACTTGAAACTGTAGAAGAAACTGTTAAAGAGGAACAAGAGATAAAAGTAGAGTTTGTAGATTTTACAGACAACGACAATGAACTAGATATGGATGTTACAGTTGAAACTAAAAATGCCTTAGAAATAAAGAGGAAATTATCAGAAGAACTTGGAACTGAAGATGATTTGACTGACTCTGGTAGTATTAGTGACAGAGCTCCGAGTCCTGATAAGGATGACAGTGACTGTTTTAGCAGTGACGAGTCACTTAAAGAAGTACAAAGAATGTTAAAAGTTCTTGATAAATCAGAATCAAAGAATGTAGAGGAACCAATAAAACCCAAGAGGAAACCTATTGATATAGAAGATCTAAGGAATAAGTTGGAAGAGAAATTCAAGAGATATGAGCCTGTAAAGGATGTGGATGGAAATATTATCGACCGGGATGCTGTACTAAATAATTTGGATAAAGTACAATATCTATATACATTAAGAAGGCTATGCTTAGGCCCCGGTCCTTTTAGTCCATTGGCTATTCGCAAGTTGGCCAAGATTCATCACCGTTTTTCAAATAACGACACTGCTCCATACACTAAAATCTTTCTTGGAACGCAGGCTGAGCCAGAATTGCCTTTCGAGTGCTCGATATGTCACATCCGCACTACAACCAAGAGATATTTGGCGAACCATTTGGCCACACACAAAAGGGTGTTGAGATGCAAGTTGTGTACCTTCACATGTGGTATCAATAGTCGGTCGTGCCTAGCGTCCCACCTCAACACTCACGCGGCGCGGAACATCTGCACGCTCTGCGGGGACGCGTTCGGCACGCAGAAGGGATTCCAGATACACAAACTGAGGAAACACGCTGGTGAAGTGTTCGTGCAAGACAAAGACAACACAAAATGTGAGGAATGCGACCTTTTGTTCATATCGAGCGAGGTTTATAACAAACATGTGAGGAAAACACACAAGGAACGCAAAGAAACAACTACCTTATTGTATACATGTCGTTTGTGTGATTGGAAGGGTCCGAGGCGTGCCCTGCAGAAGGAACATTACCGGACCGAGCACCCGGACGCACACTCCACTGAACCCCATAAGGGATACAACTTTTTGTGCCATGACTGTGGGAAGCGATTCAAGTACGTGTATTCGTACACGGACCACATGAACAAGCACAACGGAATGAAGCCGCACGCGTGCACCAAATGCCCCAAGACGTTCGCCAGCCGGATGGTGTTATACACTCACTTGAAGAGTCACCAAGCACCGAGTAGGGAATGTGGCCAGTGCGGGAAGAAATTCACCACAAGTGTGGGGCTGCACAATCATATGCAACGTCACCTGCCCCCGTCCAGGGAGTGTCCCCACTGCGGCAAGATGTTCACTACTAACACGGGACTCAGCGTGCATATCAGGATACACAGAAACGACCGACGCTTCAAATGCCACATCTGCGGTAAAGGATTCTTACACAGCTCAGCGCTGACATCTCACGTGTCCGGCGTACATTACAACAAGAGAAGACAAAGGAAGCCGCGACAACACGATATGGACCTAGACAGTAATTGA
- Protein Sequence
- MKQPKAVYNQSEDLDMAAPIQTPYMKNPHIIIVNIPKDDDIEMLESPKLDEIDEQFNENNTIDVADIKIEYLNTDNENESLKKFDVSTVKSESIEPVFKIFPDEELGTDDDLNDLDYTVKSNLESTNSDSDNSNMEVDILETKKNKHKRKPINVEDLKAKLKEKFKRCGTVKDEKGNVIDVDIVMNNLVVSRLFPIKKLCLGPGPFSPLAIRKLSEICNTASLFDTLRLNNNEEMLAEFEKRRLSLNYTKHLHRCESCLKGFLHRPMLDFHIKTSHNPAMPFECSICHMRMSTRDKLSSHTSTHRNVLKCKLCAFSAGKRTRTSLAAHINSAHEARHACALCAAAFMTAHGLEVHHLKKHHGEQFVESEDNKKCEECNILFISNEVYVKHMRVTHKVRGGRSRGNMIYEYSCRVCEWKGSSRRLQMDHYQSEHPDADSKFLHSGSYLCHDCGQRFKSITAYQDHMNKHTGTRPYACTKCSKAFFSRLNLDSHILRHLPPTKECPHCGKKFTTGTGLSSHIRSGSRTKFCSECLYKLKKCFEFKKYCQLAAEKLKSWGRQPKDKKKPKHLLYTEMPEEQLSLCNKNNYKIYFYQTGDVDIAAPIQISSSKNPHIVTVNIPADSAPIEEDSIEEPNLCPLETVEETVKEEQEIKVEFVDFTDNDNELDMDVTVETKNALEIKRKLSEELGTEDDLTDSGSISDRAPSPDKDDSDCFSSDESLKEVQRMLKVLDKSESKNVEEPIKPKRKPIDIEDLRNKLEEKFKRYEPVKDVDGNIIDRDAVLNNLDKVQYLYTLRRLCLGPGPFSPLAIRKLAKIHHRFSNNDTAPYTKIFLGTQAEPELPFECSICHIRTTTKRYLANHLATHKRVLRCKLCTFTCGINSRSCLASHLNTHAARNICTLCGDAFGTQKGFQIHKLRKHAGEVFVQDKDNTKCEECDLLFISSEVYNKHVRKTHKERKETTTLLYTCRLCDWKGPRRALQKEHYRTEHPDAHSTEPHKGYNFLCHDCGKRFKYVYSYTDHMNKHNGMKPHACTKCPKTFASRMVLYTHLKSHQAPSRECGQCGKKFTTSVGLHNHMQRHLPPSRECPHCGKMFTTNTGLSVHIRIHRNDRRFKCHICGKGFLHSSALTSHVSGVHYNKRRQRKPRQHDMDLDSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -