Haes008485.2
Basic Information
- Insect
- Hemithea aestivaria
- Gene Symbol
- -
- Assembly
- GCA_947507615.1
- Location
- OX382329.1:4038789-4060255[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.038 3 9.1 3.6 1 23 27 49 27 49 0.96 2 11 0.0047 0.37 12.0 1.8 3 23 57 77 55 77 0.94 3 11 1.5e-05 0.0012 19.8 3.2 1 23 83 105 83 105 0.96 4 11 2.1e-05 0.0016 19.4 6.0 2 23 112 133 112 133 0.97 5 11 2.6e-06 0.0002 22.2 4.0 1 23 208 230 208 230 0.98 6 11 0.0022 0.18 13.0 0.3 2 23 236 257 235 257 0.97 7 11 2.6e-05 0.0021 19.1 6.5 1 23 308 330 308 330 0.98 8 11 2.6e-05 0.0021 19.1 6.5 1 23 351 373 351 373 0.98 9 11 1 79 4.6 1.8 3 20 382 399 382 401 0.93 10 11 2.8e-05 0.0022 19.0 6.0 1 23 468 490 468 490 0.98 11 11 6.8e-06 0.00053 20.9 4.8 1 23 496 518 496 518 0.96
Sequence Information
- Coding Sequence
- ATGTCAAGTCCAATGAAGAAGTCCCTCCTAGCCAGGAACAAGCTTGCCGTCATCATTCGAGGGCCGGAAGGTACACAGTTCTGCTGCGTACAGTGTCCCGTCAAATGTGATAGCAAGGAAGAGTTAGAGCACCATCTGCTGGTGCATAACCATGAATACAGGCATCTCTGTGGGATTTGTGGCACTGGATTAAAACGCAAAGAACACCTAGACCGTCACACCCTAGAGCACCAACAAGTGAGGCCTCACGTCTGCGACATCTGCTCCAAGGCCTTCAAGAGGAAAGAACACCTCAACATACACAAGAGCATCCACTCGGGGGACAAGAACGAAGTCTGCATGCTGTGCCATAAATCATTCTACCGCAAGGACCACCTACAGAAGCACCTGCAAACCCACAGCAAGATTTTCTTAGAACAGAACATAACTCTAGAACAAGATGTGGTTGGAATAAAGGCTGAGGTTATGGAACTGGACGCTTCGGACCGATTTGATGATAGCTCGCAAGACGTTCAAGGGTTTGAAGACATAGAAATAACTCCAGACCAAGGTTCGTACGTGGAAATAACCGTGGACCCTTTGGACATCACAAACCAACAGGTTCAGAAAGAACTGAGGCCGTACGCTTGCAACTTGTGTGACAAGACGTATAAGAGAAAAGATCATCTGAAGTTACACACACAGACGCATATGAAAAAGGAGAAGGTTTGCTCCGAATGTGGGAGAGCGTTCCTAACAGACGAGAAGTTGCTCCAACACATGAACATGCACCTCAACGCGTACTCCATCATGAACGGGGACGAGGACAAGACGCATCTGCAAGCTTTGCTCGCCGAACACAATATTGATCCTTCGTTTACAGACAACAGCCTCCTAGTCCCGCGCATGTCAGTCCCACACTTAGAAGACACATCGCGACGTCACGAGTGCGACATCTGTCACAGGAAGTTCAAGCGGAGACAACATCTGCTCGTTCATATGAACGTACACAACAAGACCACTCCTAATATATGGTGCTCTAAGTGCAATGAAGAAGACACATCGCGACGTCACGAGTGCGACATCTGTCACAGGAAGTTCAAGCGGAGACAACATCTGCTCGTTCATATGAACGTGCACAACAAGACCACACCCAATATATGGTGCTCTAAATGCAATGAAGGGTTCTTCTCAAACCAAGCATTCGAGAGCCACAGCTGCATGGCCGACGAGGAGATCCTCAACATCAAGATCCAGCCCTCGCCGCCCCTCACTGAACTGGATATCAAGATCATACCCCAGCCGGATGCTAAGAAGGAAAATGAACATCCCCAGATCAAGATATTACCATTGGAATCGAAAGAAGACGTGACAATATACGACATCCGCGACGAGTCATCGATCCCGTCGCCGCGTCGCGTCTACGTGTGCAAGTACTGCTCCAAGCCCTTCAAACGGAAGGATCACTACAAGATACACTTGCACATACACACCGGGGTCAAGTCATTCTTCTGCACCACTTGTGACAAAGGGTTCTACCGCAAAGACCACCTGCAAAAGCACATGTTCGTGCACGCCAAAACCAAGCCTAAGCCAAAGAAAGCGTTACCAGACCTGTTCCCTATCAACCAGCTGCCAAAGATACATGATCATAAGGATAACGGTCCTACGAGGAAGGAGGTGTACCCTGAGATTACTATTCATGCACCATCGAACACAAAACTTCGAGTACCACTACAGATCAAGGTCCCGTACCAAGTGGTGATGTCGATGGACAACGGTGAGGAGCGAGCCGTCACCATCGACCCGCAGGAATACGGCCAAGATATGCCCTTACCACTCGTCATATAA
- Protein Sequence
- MSSPMKKSLLARNKLAVIIRGPEGTQFCCVQCPVKCDSKEELEHHLLVHNHEYRHLCGICGTGLKRKEHLDRHTLEHQQVRPHVCDICSKAFKRKEHLNIHKSIHSGDKNEVCMLCHKSFYRKDHLQKHLQTHSKIFLEQNITLEQDVVGIKAEVMELDASDRFDDSSQDVQGFEDIEITPDQGSYVEITVDPLDITNQQVQKELRPYACNLCDKTYKRKDHLKLHTQTHMKKEKVCSECGRAFLTDEKLLQHMNMHLNAYSIMNGDEDKTHLQALLAEHNIDPSFTDNSLLVPRMSVPHLEDTSRRHECDICHRKFKRRQHLLVHMNVHNKTTPNIWCSKCNEEDTSRRHECDICHRKFKRRQHLLVHMNVHNKTTPNIWCSKCNEGFFSNQAFESHSCMADEEILNIKIQPSPPLTELDIKIIPQPDAKKENEHPQIKILPLESKEDVTIYDIRDESSIPSPRRVYVCKYCSKPFKRKDHYKIHLHIHTGVKSFFCTTCDKGFYRKDHLQKHMFVHAKTKPKPKKALPDLFPINQLPKIHDHKDNGPTRKEVYPEITIHAPSNTKLRVPLQIKVPYQVVMSMDNGEERAVTIDPQEYGQDMPLPLVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -