Haes005903.1
Basic Information
- Insect
- Hemithea aestivaria
- Gene Symbol
- zfpm1
- Assembly
- GCA_947507615.1
- Location
- OX382334.1:15584982-15597501[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.6 1.2e+02 4.0 0.3 2 23 6 27 5 27 0.96 2 14 0.034 2.7 9.3 0.1 1 23 994 1017 994 1017 0.92 3 14 1.8 1.4e+02 3.8 0.6 1 23 1089 1111 1089 1111 0.96 4 14 3.6e-05 0.0028 18.6 3.6 2 23 1114 1135 1113 1135 0.97 5 14 0.00025 0.019 16.0 3.6 1 23 1141 1163 1141 1163 0.99 6 14 0.00049 0.038 15.0 3.1 2 23 1170 1191 1169 1192 0.95 7 14 9 7e+02 1.6 0.1 6 23 1206 1223 1204 1223 0.95 8 14 0.06 4.7 8.5 0.2 3 23 1230 1251 1228 1251 0.95 9 14 0.0012 0.096 13.8 0.4 2 23 1264 1284 1263 1284 0.97 10 14 5.2e-06 0.0004 21.3 2.2 1 23 1290 1312 1290 1312 0.98 11 14 0.00016 0.013 16.6 0.9 1 23 1320 1342 1320 1342 0.99 12 14 0.0083 0.64 11.2 9.4 1 23 1348 1370 1348 1370 0.98 13 14 1.9e-05 0.0015 19.5 1.0 1 23 1376 1400 1376 1400 0.95 14 14 0.00056 0.044 14.9 5.5 1 23 1406 1428 1406 1429 0.96
Sequence Information
- Coding Sequence
- ATGGATCAGTTAGTGCAGTGTCCCGTGTGCACGCTATTCCTCCACAATGGTATGTCTCTGGAGTCTCATCTGGACACACATCCCAAAGACCAGGTTATTAAAGCGCTATGTAGTATAGCCAACAACAAGAGTAGCAGGTGTTCGTCTAGTAGAACATCCACCCCCGTGGGCTCTGAGAGATCCTACAGGAGTAGGTCCCGAACCCCTGCCGGTGATGACAATGGCCGCTGGAGTAATTCTCACCGGAGCTCGGATCAAGACCGCTTCTGGAGCCGGACTCAAAGTGGGACCTCAAGCAGAGCACCTAGTAGAACACCCAGTAGGACACCATGCAGGACACCCAAGTCTATGTCATCCGCTACTCCGTCTAGGAACTGCACTCCCGATATCAGATTGGTAGAAAATTTAGCATTTGAAGCCACTTGCTCCTCACAACACTCTGTATCTGTTTCTGATCAATCAAACCCGATATTGTTGAAAACTGATAAAACACAGCAAACATATATCCCACCGTCTTTGGTTGATTATGACCAAAAATATGTGTTTTATCCTGAACAACAGGAAGATAGAGAGATTAAATACTCCCGAAGTGCAGAATACAATGCTTTGGAAGCTAATAACGCATACTCGTACAACATTCAGAGCACCCCTACTATAGGCACTGGTATAAAAGTGCAGACCAATCTGATGCCTACTGTTGTGCCGAAGAAGAGAAACAATCCTATTAAAGTGTTGCCAAAACCAAATAATTTGCTGAATTTAGTCAAGACAAACATTAATGGTGTACCGTACCTGGCCTCGAATGTGAAACCCATGGCGGTATTGGGTTCTTCCACTCCTACATTTGTTCAGAAGAACGTTCAAAACAGTGTGATAATGGCAGGTGCATTACCAAACACGCAAATGCATATAGACGCTAAGACAGTGCCTCCATTAGTCCAAAATCACTTCAACCAGCTGAGCTCTAGCTCATTCACTCCGGGAACTACAGTGGTCACCCAGAATTCTCAGTACTTCTACCAGGAGATGGTACAAAACATAGATCCTAAGAGTTTTATTCAGACTATGCCGGTGTTCACCAGTCATGAGAATGTTACAAATGTCTCCCAGACTAGCTCAATGTATCAGAATGTGATGCTCGTGGATCAATTTGGCAATGCCTCATGTATGTATGCAACACCCCAACAAATTATACCTAAGCAATGTCCTCCTCAGATGTTTACTGACACCAGTGCCATCATACCCAATGTACAAAAACCTGGACCAAATTTGAATGAACAAAAGAAAACATTGATTATTGAAGTGGGTCCCATTATGCCATCCATGTCAGTGAGCACTCGCAGTAACAACATGAATCATTTGTTACCTCGTCATCCTAAATCTGTATCTATATTGCCAAAACATGAGGCCCCTAGTGTAACTATCAGTGAAAAAATAGATAATCGTAGTGAGACACCAGGTACTACGAAGGGTCTCAAAATTCTTAGTAATATAAAGGTGGAAGTTCCCGTACAGCACAACAAAAATATGATAAACACTGTGATGGACCTCACAGGGCCCGGCGAGCCAGAGAACATCTTGCCAGATATAGTAGAAGAGAAGAGACCATCACATGACTTCATACAGCCCTCTACCAGTAAGGGAATATTGTCTTTTGCCGAGCTGAAAAAGATAGACAGTCCTACCTCAAGTAAAGACTCTTCTAGCAAACACTGTAGTGTAGATAACAAATTAGATATGGAGTTGAGTGATAGCTGCCCGGTTCCTGACCTCATATGTAACGAGAAGCCTTCCATATCACCTATTAGTGAACTTTCAGAGAACGGAGACAACTCCACTGATCGCACCTCCATTTCACCCAAACCTGAAACTAAGAAAATGTGTACTGATGTAGATAGCAAAGAAAAGAAGATGCAGATGCCAATAAAACAATTTAGAAATATGCCACTAAGACTGAATAACATTTTCGTGAAGAAGAATAAGAAGGTATTGCAGATAAAAAATATGAAAGCTGTCGCCGGCGGCAGCGGGGATCGAGAGCTGGAGCCCGTGCCTTGCTCCTCCACCAGCATCACGCCCGTCGCCTTCACTAATCAACTTACAAAGACTGATTTGCACAAGTCTAAGTTGAAGACTATATCCATAGAGGAGATCAGGGAAAAGGAGGAAATGTCGGGGTTCGAGGGCGAGCAGTCCGCAACTCAGACGCCGGTGAAATCTGACACGTCAGTGGAGGTCATGCCGGAAGACATTCAGGTGAAGGAGGAGATAAGCACCAGCAACGAGGGATACAGCAACGAGAGCAGGAGCGATGCGATGCAATCTCTCGACCCTCTGCGGCCGATCAACATCAGCTACGGAAATGTATCCACAGAGTTTGACGAGGAGTCGAGTCACCGCGAACTGCTCGACCTGGAAGGGAACGGCAAGACGAAGCAGTTCGTCAGTATGATGAACGAGAACTACTTCGGCGATAACATCTACGCGGACTACTTCACGCCCGACAGAGTGGAATCGTTTGATGATAAAGGGCCGACAGTTTTCAAGGAGAACACCAAAGAGGCTTTCTCGTGTAGCATTTGGGGTGAGCCGTCGAACAAGGAGAGCGAGTTCGTTCTGCCGAACTTTATACATGAGAGTTACAAGATAGCTGACAGTCATGGTATGGAGTATGACGGGGATCGGCAGGAGATGCACGGGGTGGAGCAGGACAGTAAGGCGGACGTGTTGACGGAGGAGCCGCCGCTTAACATATGTGCGGACGAGCGCATGCCGCCGCGAGGGGAGCTTAGCGGCCAAGAGAGCAACGGAGACATGGACTCCTCTTGGAATGGGGTATACACGGAAGTGACGCCGGCCGAGCCGTACGATCTGATCGCGCGAGAGAGCTGGGTCTCGGACGGCTCTGAGCTCGATGTCACGGAGAGGCGGGACACACTAGAAGAGATTCCATTCCCTCTACCGCCCAAGGCTCGCATATACACGTGCACGCTCTGTGGCGGCAAGTTCCCTTCGATGAAGGAGCTGCGAGGGCACCGGGCGGCGGTCCACACTGGCCCGTCATCCTCCTACAGCATAGCCGCTACTATCAAGACTGAAGCTAGAACAGAAGCTGGACTATCCACAGCCAACCTGCTAACCATGGACACGAAAGACACCATAACCTCGACCATCCTGCAAGTGTACGACACCATGGACAACAAGCCCAAGCTGGACAACCTGGGAGGGCTGCTGAAGCAGGAGACCAAGAGGCGACGGAGAGACTTCATCTGCCCCACTTGTAAGGAGGATCAGTGTAACGAAGCAGCGTTCAACCTTCACCTGAAGATTCACCCGCTGGAGTGCCTCAAGTGCGGCAAGTGCTTCCACCGGCGCGCCAACCTCGCGCTACATATCAAAACACATCTAGGAATTAAGAATTACAAATGCGACGTGTGCGAGAAACGTTTCATAACGCGCCAGAAGTTGTCTGAACATCACAATACGCACACCGGCCGCGCGCCCGTCAAATGTACGCTCTGCGACGAAACCTTCCGACGATACTCCAATATGCTGCAACACAGAGACCGCCACCACTACAAGAAGCGCGGCGCAGTGCGCGACTACGTGTGCTCGTGTGGCGTAGTGGTGCAGTCGCGCGCCAAGCTGGCGTGGCACCGCGAGACGCACGAGCCGCGCCCCAAGCCCTGCCCCGCCTGCTCCGACAAGTTCGTGCACGCCGCCTCACTCGCGAGGCACGTCCGCCGGGCGCACAACCATCTCTGCAACACGCCGGACAAGGGCAACGTGCCGTGTCCCGTGTGCAAGCAGATGTACCTCCGTTCTAACCTACGTACACACATGCAAACACACAGCGGGCAGCGTCCGTTCTCGTGCGTCATCTGCAACAAGTCGTTCACCACCAAGTGGAACCTGAAGCTGCACCGCTACACTCACATGTCTCGCTCGGCCAAGCCCTTCAAATGCAACGTTTGCACCAGCGCCTTCGTCCGCCGATCAGAATACGTCTCCCACATGAACTCTCACAGAGCCGTGAGACCTTACACCTGCAACCACTGCGGTTGCAGATTCGTCAGGAAATACAACTGTCAACGACACGTCAGAGAACACGAACAAGACAAGAGGTACGCCTGCAGTGTCCCCGAGTGTGGTAAGACCTTCCACCGTAGTTATTATCTCTCCGAACACATGAAAGTCCACAGTGGTGCTCGCCCGTTCTCTTGCAACGTCTGCGGTAAGACTTCAACGAACAAATCCAACCACAACAAGCATCTACGGATACATCACGCTCGGGAACCACTGTTGACCGAGGCCTAG
- Protein Sequence
- MDQLVQCPVCTLFLHNGMSLESHLDTHPKDQVIKALCSIANNKSSRCSSSRTSTPVGSERSYRSRSRTPAGDDNGRWSNSHRSSDQDRFWSRTQSGTSSRAPSRTPSRTPCRTPKSMSSATPSRNCTPDIRLVENLAFEATCSSQHSVSVSDQSNPILLKTDKTQQTYIPPSLVDYDQKYVFYPEQQEDREIKYSRSAEYNALEANNAYSYNIQSTPTIGTGIKVQTNLMPTVVPKKRNNPIKVLPKPNNLLNLVKTNINGVPYLASNVKPMAVLGSSTPTFVQKNVQNSVIMAGALPNTQMHIDAKTVPPLVQNHFNQLSSSSFTPGTTVVTQNSQYFYQEMVQNIDPKSFIQTMPVFTSHENVTNVSQTSSMYQNVMLVDQFGNASCMYATPQQIIPKQCPPQMFTDTSAIIPNVQKPGPNLNEQKKTLIIEVGPIMPSMSVSTRSNNMNHLLPRHPKSVSILPKHEAPSVTISEKIDNRSETPGTTKGLKILSNIKVEVPVQHNKNMINTVMDLTGPGEPENILPDIVEEKRPSHDFIQPSTSKGILSFAELKKIDSPTSSKDSSSKHCSVDNKLDMELSDSCPVPDLICNEKPSISPISELSENGDNSTDRTSISPKPETKKMCTDVDSKEKKMQMPIKQFRNMPLRLNNIFVKKNKKVLQIKNMKAVAGGSGDRELEPVPCSSTSITPVAFTNQLTKTDLHKSKLKTISIEEIREKEEMSGFEGEQSATQTPVKSDTSVEVMPEDIQVKEEISTSNEGYSNESRSDAMQSLDPLRPINISYGNVSTEFDEESSHRELLDLEGNGKTKQFVSMMNENYFGDNIYADYFTPDRVESFDDKGPTVFKENTKEAFSCSIWGEPSNKESEFVLPNFIHESYKIADSHGMEYDGDRQEMHGVEQDSKADVLTEEPPLNICADERMPPRGELSGQESNGDMDSSWNGVYTEVTPAEPYDLIARESWVSDGSELDVTERRDTLEEIPFPLPPKARIYTCTLCGGKFPSMKELRGHRAAVHTGPSSSYSIAATIKTEARTEAGLSTANLLTMDTKDTITSTILQVYDTMDNKPKLDNLGGLLKQETKRRRRDFICPTCKEDQCNEAAFNLHLKIHPLECLKCGKCFHRRANLALHIKTHLGIKNYKCDVCEKRFITRQKLSEHHNTHTGRAPVKCTLCDETFRRYSNMLQHRDRHHYKKRGAVRDYVCSCGVVVQSRAKLAWHRETHEPRPKPCPACSDKFVHAASLARHVRRAHNHLCNTPDKGNVPCPVCKQMYLRSNLRTHMQTHSGQRPFSCVICNKSFTTKWNLKLHRYTHMSRSAKPFKCNVCTSAFVRRSEYVSHMNSHRAVRPYTCNHCGCRFVRKYNCQRHVREHEQDKRYACSVPECGKTFHRSYYLSEHMKVHSGARPFSCNVCGKTSTNKSNHNKHLRIHHAREPLLTEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00790796;
- 90% Identity
- -
- 80% Identity
- -