Haes025003.1
Basic Information
- Insect
- Hemithea aestivaria
- Gene Symbol
- -
- Assembly
- GCA_947507615.1
- Location
- OX382349.1:10457596-10464667[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.00014 0.011 16.8 0.4 3 23 379 400 378 400 0.96 2 16 0.0035 0.27 12.4 0.8 1 23 430 453 430 453 0.95 3 16 2.6e-05 0.002 19.1 1.2 2 23 507 529 506 529 0.96 4 16 0.00028 0.022 15.8 0.5 1 23 535 558 535 558 0.95 5 16 0.26 20 6.5 0.4 2 19 563 580 562 582 0.93 6 16 4 3.1e+02 2.8 10.7 1 23 591 614 591 614 0.96 7 16 0.12 9.1 7.6 2.6 1 23 618 641 618 641 0.91 8 16 0.0026 0.2 12.8 2.6 2 23 654 675 653 675 0.97 9 16 0.035 2.7 9.2 1.1 1 23 682 705 682 705 0.96 10 16 0.046 3.6 8.9 0.1 2 23 711 731 710 731 0.94 11 16 3.3e-05 0.0026 18.8 0.7 3 23 739 760 737 760 0.96 12 16 0.0014 0.11 13.6 0.2 2 23 765 787 764 787 0.97 13 16 0.00061 0.047 14.8 0.5 1 20 793 812 793 814 0.95 14 16 0.00018 0.014 16.4 0.5 2 23 820 841 820 841 0.94 15 16 0.015 1.1 10.4 0.7 1 23 847 870 847 870 0.96 16 16 0.0021 0.16 13.1 1.0 2 23 876 897 875 898 0.94
Sequence Information
- Coding Sequence
- ATGTACGTTTGCCTGAAACATTTTGAAAAACGATTTCTCACTTCTAAAATTCGTCTTAAATTTGGAGCATATCCGACGCTGTTTACATACAAAGAAATATCTAATGGGTTGCCTGATGTACCAGATGATGATATTGAAATTGCTAATGTTACAAAGAATGTGCGCAGAGAACATGACTACTTAGATAGTAAAACTAAACATGAGGATCATACTTACGCCAAAACTGACGAAACAAAAGAAAATGAACCACCACAAGACAAAATATTTACAATAACGGATTCACTGACATTTGAAACGGACGAACAAGAATCACAGACAGACAATCACGCAGATGAAGTGTACAATATTTATGATGATCATGAGATATATACACATCAAGTTGATATACCAGGAGCACATGAAGCTAAGGGAGTCCTATATAAATATAATAAGATACATTCACAAGATGTACTAAAGGAAGCCCTTCCAAAATATTACATCTTAGAACAGTTTGAATTTGAATCTAATAAAAGTAAAGCTAATGAAGTTGACAGACACAAATCAAAACCAGAAGTTTCAAGACCGGTCCTGCATCACGTGGGCTTCCTCAAACAGAAGTTGAGGTCAATGCTCTACTCTCACCAGTTCTGTACGCTATGTTTCGAATCAGACAAGCCTCTCAAGCCATTCCACGAACAAATCGTAATAATAACTGACAACTGGACTCAAACTGTGCGGCTCAAACAACTCTACAACTATGTTTTTAATCAGAATGCAGAGCAGTCAGCAAGTGAATACATATGTACAGATTGTTCAGAACAATTGAAACAATCCTACATCTTCATAAAATACTCCAAACTAACGACAAAACTGCTGGAGTCGTATATCAATGACTTGCAAACAAAGACATTTGATGAAGCGATCACTGAAAAAGGACCGACAGAAGAAAATAATGCCTATGGTATAAATTTGGAAAGTGATCAAGTTTACAAATATTTCAATAAACAAAATGGACAGAATTATGATAACGATCAGGAGATTATTACTGAGGAAATAGAAAGTACAGATAATTTTAAAATTATATCCCTCAGAATTCCAAAAAGAAAAGTGACTAAGAAAGTTAGATCAAAACCTGCTGTAAAAACAAAACCTGCTTGTGAAATATGCTCAAAAACATTTAACAATAACTTTACGTTATCAAATCATTATATGGTGGCACACAGGAAAGTGCGCTGCGAGATTTGTTCCTCGCTGGTTGATGAGGGCGACATTAATCAACATTTGACAACGGAACATAAAGACAAAGTGCACTTCTGTGAAATATGTAATCTACCATTTTATCGCCGGGAAAGTGTAACAGTACATACTAAAGTCGTTCACGTCAATGACAACTTTGATGGATGTGTGCTCTGCTACGGTCAACTTGGCGACCATGACAAACACGCCTCATGCCCAGAATGCAACGACATGGCATGTATTCACAAAAAGTATTTGGACGCGTTCGTCGAACAGAAACTCAATTACGCAACAGCTAAAGTGAAATGCCCGTACTGTGACTACAGTTGCAAACAAAAAGACGGTCTCATCAGACACGCTAACAAGGAGCATTTGAATCATTGCCCTCACATTTGTGATCAATGCGGACAACAGTTTTACGATAAACCATCACTGGTGCAACATATTCAAGTGTATCACTCTAGTGTGTTGTATTGTTCATATTGCGATTGTGTGTGCTCGAGTGACGGCGCGCTGGCGGCGCACGAGGCAGACTGTAGCGCAACAACACGAGCGCACTGCTGCCAATACTGCGCGGCTTCCTTCCACACATTCAAACTGCTGCAGAAACACCACAACACGCGCCACAAGGAGACCTTCCCCTGCAACTTCTGCAACAAACTCTTCCAAACAGAATATCAGAGAAAACGTCACACGTTCCTCATACACAGTGGAGTGAAAAGGAAAATAATGCACAAAAAATTGGTGTGTAAAATGTGTCACGATGTTTTCGATCTGAGGAGTGAACTGACACATCACATGAAGATACATCAAGGTCCCGACGCCAAATACAATTGCAAGCCGTGTGATACTGAGTTCGAAAGTTTGGAGACGCTCAAATCGCACAATAAGACCAAGCATGGAGATGCTACGAGTGTTTGCAACATATGTGGCCGGAACGTGAAGGAATCTTTGTTAGAGAAACATCTGGAAGAACACAAAATGGACGCCGAAGTGAATTGTGACGAATGCGGTAGGTCCTTCACCAACATCAACCGACTTAAGGTACATATTAGGAAACGACACGTCCACACTATGAAATGTAAGTTGTGCAACTATGGAACTGTGACATCTGCGGGATTAGAAACTCATATGAATAGAGTTCATAAGAAAATCAAGCCGTACGTCTGTCATCTGTGCGGGCAACAGTTTTATGGGAAAACTAGTTTGACCAAACACACTGCAGTATGTCAGAATAAACCTCGTTGTGCAACGTGTGGGAAAGAATTTACTACTGTAGCCAATTTGAGGAAACATTCGTACATTCATACCGGAGTTAAACAGTTTGCGTGTAAGATATGTGGAGACAAGTTCAGGTCCACTGACTCGAGGAATGTGCATATATTGAAAAAACACGCTGAGAAAAGCATGTCATGTCCAAATTGTCCTAAGAAATTTTTGACCATGGTAAATCTTAGAGTGCATATTGAAAAACACCATTGA
- Protein Sequence
- MYVCLKHFEKRFLTSKIRLKFGAYPTLFTYKEISNGLPDVPDDDIEIANVTKNVRREHDYLDSKTKHEDHTYAKTDETKENEPPQDKIFTITDSLTFETDEQESQTDNHADEVYNIYDDHEIYTHQVDIPGAHEAKGVLYKYNKIHSQDVLKEALPKYYILEQFEFESNKSKANEVDRHKSKPEVSRPVLHHVGFLKQKLRSMLYSHQFCTLCFESDKPLKPFHEQIVIITDNWTQTVRLKQLYNYVFNQNAEQSASEYICTDCSEQLKQSYIFIKYSKLTTKLLESYINDLQTKTFDEAITEKGPTEENNAYGINLESDQVYKYFNKQNGQNYDNDQEIITEEIESTDNFKIISLRIPKRKVTKKVRSKPAVKTKPACEICSKTFNNNFTLSNHYMVAHRKVRCEICSSLVDEGDINQHLTTEHKDKVHFCEICNLPFYRRESVTVHTKVVHVNDNFDGCVLCYGQLGDHDKHASCPECNDMACIHKKYLDAFVEQKLNYATAKVKCPYCDYSCKQKDGLIRHANKEHLNHCPHICDQCGQQFYDKPSLVQHIQVYHSSVLYCSYCDCVCSSDGALAAHEADCSATTRAHCCQYCAASFHTFKLLQKHHNTRHKETFPCNFCNKLFQTEYQRKRHTFLIHSGVKRKIMHKKLVCKMCHDVFDLRSELTHHMKIHQGPDAKYNCKPCDTEFESLETLKSHNKTKHGDATSVCNICGRNVKESLLEKHLEEHKMDAEVNCDECGRSFTNINRLKVHIRKRHVHTMKCKLCNYGTVTSAGLETHMNRVHKKIKPYVCHLCGQQFYGKTSLTKHTAVCQNKPRCATCGKEFTTVANLRKHSYIHTGVKQFACKICGDKFRSTDSRNVHILKKHAEKSMSCPNCPKKFLTMVNLRVHIEKHH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -