Haes015047.1
Basic Information
- Insect
- Hemithea aestivaria
- Gene Symbol
- -
- Assembly
- GCA_947507615.1
- Location
- OX382350.1:3326851-3352177[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 3.1 2.4e+02 3.1 0.0 3 23 13 33 12 33 0.92 2 18 0.2 16 6.8 1.4 2 23 56 77 53 77 0.89 3 18 0.05 3.9 8.7 0.1 1 23 81 103 81 103 0.93 4 18 0.27 21 6.4 1.1 1 20 108 127 108 131 0.78 5 18 0.024 1.9 9.7 2.4 1 23 137 160 137 160 0.96 6 18 0.0012 0.09 13.9 3.4 1 23 167 190 167 190 0.97 7 18 3.3e-06 0.00026 21.9 4.1 1 23 196 218 196 218 0.98 8 18 0.0026 0.2 12.8 3.0 1 23 224 246 224 246 0.97 9 18 0.05 3.9 8.7 0.1 2 23 275 297 274 297 0.96 10 18 0.1 8.1 7.7 0.1 2 23 392 414 391 414 0.94 11 18 0.0051 0.4 11.9 1.1 1 23 435 457 435 457 0.98 12 18 2e-07 1.6e-05 25.7 0.4 1 23 461 483 461 483 0.98 13 18 0.0022 0.17 13.0 1.1 1 23 491 514 491 514 0.96 14 18 0.0056 0.44 11.7 1.4 1 23 519 542 519 542 0.94 15 18 0.0011 0.085 14.0 0.9 1 23 548 571 548 571 0.97 16 18 6.1 4.8e+02 2.2 0.1 2 23 811 833 810 833 0.87 17 18 7.3e-05 0.0057 17.7 3.3 1 23 854 876 854 876 0.98 18 18 0.0091 0.71 11.1 0.5 1 23 880 902 880 902 0.95
Sequence Information
- Coding Sequence
- ATGCCTTTAATTAACGTTGATATACACAACGCTGTTTGTGGTTTATGTATGATCCCATTCACAACAATTGCCAATATGCGAGAACACGTAATTGAACATGGTTACGAATTTAACTATAAACACCCTGACGGCGTTCTACCTTTCCTACTAGATAAAGAATGTTGGCAGTGCATTATATGTCAACAGAAATTCAATAATTTTCTCAAATTGTACGAACATATGAATATTCATTACCAGCATTACATATGTGCTATTTGTGGAAAGGGATATATGACGGGGGCGCGGTTGAGAAAACATTCCGAATTGCACATATCAGGGACGTTTCCTTGCAATTTGTGCCATCGAACTTTCAATATGCGAACAGCTAGAGATTCTCATAAAGCCAACGTTCATAAACAGCTGCCCAGATATCAATGCCCTTCCTGCAACCTCCGATTTCACAACTACTACGACAGAATGGCACATCTCAGAGACACACACAGCGTAAAAGAAGTCCTATACAACTGTGATTATTGTCACCAATCCTTCAAAACTAGCGGGAGTAGAGCTAGCCATTTAAAATCAACTCACTTCCCTTTACTTCTCTTCACTTGCACCCATTGCGAACGACCTTTTAAAACTAACTATGAACTTAAAAGGCATATGGTGAAGCATACTGGTGAGAAAAACTTTCACTGCGAATCGTGTGGCAAGTCTTTCTTGAGGAGGAAAACGTTGGTGACCCATCTGAAGATACACCAGAAATCACAAGAGAAATCGAAGATTTTTACCAAGAAGAGTGTTAAGGCAGTGTTTCTGCCACATCAGAATGAGCAAGATCTTACATGTAAATGGTGCAACGTGTCTTTTCAAGATATAAGTGAAGTGCTGCTTCACGTACAAACTGTGCATGGGAATCTGATAGGGCGCATCATCATAAATTGGAAGACACCGGAGAGCATCAAAAATTATTACGGGGATGCCCGGGATAATGCGGCCCATATCCTACAGCACTCCAACGTGTGCCCATTTAAATTTGCCCGAAATTATTTCGCATGTGTATTCTGTCCTTTCAAATCACCAGATTTTGGCCCACTCAAACTCCACACGGCCATTCATAAAGACATCGCTGTACCTAGATCGGTACTTACAACGTACGAGAAGGGCATCTTCAAAGCTGATGTCACTAACTTAAAATGTGAAATATGCAAAGAAAACATAACAAATTTGAATGAATTGGTTGATCATCTTATCAATGTTCATGACAGACGGTTAGAAAAAGACCAAGGTCCCGGCATTCAACCGTACCTACTTGAAGACGGGTTCACATGCGCTATATGTTTCGTAACATTTGATCGATTCCTCAAACTAAGCAATCACATGAGAGAGCACTACCCTAATTTTGTTTGCTCTGATTGCGGGAAAGCTTTCACCAGAAAAATGGCTCTGAAAGCGCATACATTGACACACAGTGACAGATCTGCGGCCAGATTCAAATGCTCCAAATGCGACGAGGTTTTTCCCACGGCACAAAAGAGGGTTAAACATTTGATGTATAAACATAATATTCTTCCTCACAAATGTCCGTACTGCGATGCAACTTTTAAAGGTTACAAAGAAAGGTTGAGACATCTTAACGATGTTCATGATAAGAAAATTGAATATCCTTGCACATTGTGTCCGAAGGTTTTTAAATCCGGCTCGGAGAAATCCAAGCACTTCAGACGCATTCACCTGAATGAGAGGAATTTCACTTGTGAGATCTGCAGCTATAAAGTGATAAGTGCTGGACCCATCACCATACAATGGAAACAGAAACCGAAAGTTGCCTCGGAAGACGCTCGGGAGAATGCAGCCATTTTAGTAGAATGTTCTAACGCGAGCCCCTTTAGTTTCTGGCGAAATATCTTCACTTGCGTGTATTGCAATTTCCAATCACCTGAATTCGGTCCCATCAAACAACATTACTTATTAGAACATAAGGATAAAACTAAAACTCTGCGTCGGTCCAGGCCTACGGATTCATTCAAGGCGGACGTCACAGATCTTCGATGTGAACTCTGTCAAAAAGACATGTCTAGTATAAAAGTATTGTCTGAACACCTCATCGAGGTTCATCAGAAGCCTATTGTTAAACAGCGTGGTTGTGGGATCTTCCCATACCTTCTCGACAATGGGTTTGCGTGCGCAGATTGTGGGCCCATCACCATACAATGGATGCCGAAACATGGCTTGGAAGACGCTCGAGGAAATGCGACCATTATTCTAGACTGTTCTAACGCGTGTCCCTTTGGTTTCGGGCGAAATTCCTTCTCATGTCTATATTGCAAGTTCGAATCACCAGAATTCAGGCCTATCAAACAACACTACTTAAAAGAACATAAGAATAAAACTAAAACTCGACGTCAGTTCAGGCCTTCAAACCTGTTCAAAGTCGACGTAACTGACCTACAATGTGAACTTTGTCAAAAAGATATGAAAAACATAAAAGTATTGTCAAATCATCTTATCGAAGTTCATGAAAAGCCTATTATAAAACAGCGTGGTCTAGGCATTGTGTCATACTTTCTCGACAATGGATTTGAATGCACCGATTGCGGCTCAACATTTGATCGATTCACTCATTTAAACAAGCACGTTAATAAACATTATCCTAACTACGTCTGCCCTCAGTGTGGCAAAGCTTTTTTGGACGTGCATAGGTATAAAGGCCATATTTTGACTCATGAGAAAAAAGAAACGGCAACGTTCAAATGCTCGCAATATCATACAAAAAAATCCCAAGCAGAGATCGCACTCGCGACCTTCTTCTGCGTACGTAAAAAATATTGCTAA
- Protein Sequence
- MPLINVDIHNAVCGLCMIPFTTIANMREHVIEHGYEFNYKHPDGVLPFLLDKECWQCIICQQKFNNFLKLYEHMNIHYQHYICAICGKGYMTGARLRKHSELHISGTFPCNLCHRTFNMRTARDSHKANVHKQLPRYQCPSCNLRFHNYYDRMAHLRDTHSVKEVLYNCDYCHQSFKTSGSRASHLKSTHFPLLLFTCTHCERPFKTNYELKRHMVKHTGEKNFHCESCGKSFLRRKTLVTHLKIHQKSQEKSKIFTKKSVKAVFLPHQNEQDLTCKWCNVSFQDISEVLLHVQTVHGNLIGRIIINWKTPESIKNYYGDARDNAAHILQHSNVCPFKFARNYFACVFCPFKSPDFGPLKLHTAIHKDIAVPRSVLTTYEKGIFKADVTNLKCEICKENITNLNELVDHLINVHDRRLEKDQGPGIQPYLLEDGFTCAICFVTFDRFLKLSNHMREHYPNFVCSDCGKAFTRKMALKAHTLTHSDRSAARFKCSKCDEVFPTAQKRVKHLMYKHNILPHKCPYCDATFKGYKERLRHLNDVHDKKIEYPCTLCPKVFKSGSEKSKHFRRIHLNERNFTCEICSYKVISAGPITIQWKQKPKVASEDARENAAILVECSNASPFSFWRNIFTCVYCNFQSPEFGPIKQHYLLEHKDKTKTLRRSRPTDSFKADVTDLRCELCQKDMSSIKVLSEHLIEVHQKPIVKQRGCGIFPYLLDNGFACADCGPITIQWMPKHGLEDARGNATIILDCSNACPFGFGRNSFSCLYCKFESPEFRPIKQHYLKEHKNKTKTRRQFRPSNLFKVDVTDLQCELCQKDMKNIKVLSNHLIEVHEKPIIKQRGLGIVSYFLDNGFECTDCGSTFDRFTHLNKHVNKHYPNYVCPQCGKAFLDVHRYKGHILTHEKKETATFKCSQYHTKKSQAEIALATFFCVRKKYC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -