Haes024703.1
Basic Information
- Insect
- Hemithea aestivaria
- Gene Symbol
- -
- Assembly
- GCA_947507615.1
- Location
- OX382349.1:3550956-3552779[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.4e-06 0.00011 23.1 3.2 1 23 133 155 133 155 0.98 2 12 0.78 61 5.0 0.3 5 14 205 214 203 218 0.86 3 12 2.1e-05 0.0017 19.3 2.0 1 23 232 255 232 255 0.97 4 12 0.0011 0.088 13.9 2.6 1 23 259 281 259 281 0.98 5 12 0.0018 0.14 13.3 1.1 2 23 303 325 302 325 0.94 6 12 0.0019 0.15 13.2 1.8 1 23 329 352 329 352 0.98 7 12 0.001 0.078 14.1 0.4 2 23 375 397 374 397 0.90 8 12 1e-05 0.0008 20.3 1.7 1 23 407 429 407 430 0.96 9 12 0.0034 0.27 12.4 1.0 2 23 446 467 445 467 0.96 10 12 0.00066 0.052 14.6 0.8 1 23 473 495 473 495 0.96 11 12 0.045 3.5 8.9 4.6 1 22 501 522 501 525 0.90 12 12 0.00078 0.061 14.4 0.1 2 23 569 590 568 590 0.97
Sequence Information
- Coding Sequence
- ATGACTGTCATCAAAGAAAAAATCTACATTAACCCATTTTATTTACAGGACGATATTAAGAATTTCCCGGCAATCGTCAAAGATGAATCAGAATTGACTGTAACAGAAACACATTTGATATCTAACAAAGTTATAAACACCACTTCAACTATAACCAACACTCTCGATGGAATTATTGAATCGCAGACTACTAAGACCTTGATCATGGAAATACACCCTGTTTCACAGCAAAACTTAAAGATGGGTAACCCAGAAGAAATATTACCAACTAATATCTACACTATGGATGAAGAACCTTTTCAACTTAACTCTATAACAGGAAATTATCTATCGTTAGAACAAGAAGCCTACAGCCTATTAAGAACTAAGCGTAAAGTTATCACTAAGGAAGGCAATTTCCAATGCACAAAATGCCCAAAAACGTACACCAAGCAAAGTAGCCTGACTAATCATTATAAAATACACGATCGCATTGACAGGATGGCCAATGGTATCAAGAAGCGAATTTCGACAATGAAAATGAAAAGAGAAGAATTAGAAAAGCAAGCGGAATATGAAGTAGAAGAAAAAGAACAAATTATAAAGAAAGAAGATGGTGATGGTTATTATTGTACTTGTGGCAAAGTTTTCAGAAGGCGCAGCAGAATGGAAACTTGTCTAAGATCCCATACAGATTACTCCGACGAGAAATTCTACGCATGTAACACTTGCGACAAAAAGTTCAAGTCCAAAGAGCTCTTAATATACCACCGAAATAGGCAACACAGAAAGAAGTATCCATGCAAATTCTGCCCGACAGATTACCACACTCAAAAAGAGCTATTCAAACATCTTCAAGTGCACCAAAAAGTTCAACTAATAGAATACAAAGTTATCTTAGAAGTTGCGAAGGGAAATCAGGGTCTGCAGTGTTTGTTGTGTTCCAAAAGTTGTTCAAATTTAGCAGACTTCAAAACTCACATCATGGAAGGCCATAAAGAACCATACAAGTGCCCACATTGTAAGGAATCTTCCCCTAAATTGACGGATTTTGCAAGCCACGTGAGAAAGACGCATCCAGATGTATGCAGTGAATCTGTGTTAGATGTACTCGAAGCATTTGCTAAATTGGTTAAAGCGTGGAAATGTGAAGAGTGTGGGAAACAGTTCCATAAAGCCGATAAATTAGCGTTGCATCAAGTGGAGGAGCACACACCCGATATGAAAAACGAGCAACATTTCCAATGTGAAGATTGTCAACGGGTGTTTATAAGTCTTCAAGGGTTAAACTCTCATAGACGGATGCATCACAGACCTGAAACGACCGAAGCTCCCGAACCTGAAGAAGTGGGAGTAATGTGCTTGGAATGTCGGAAAATGTGTGTAGACATGAACGCTTTAACATCTCACATGCGCTTACATTCGATGGACAGAAAATATCCGTGCAAATACTGTGATTTCCGCTTCACAACGCCTCAGAAGAGAAAAGCACATGCGGAGGTTCACACGGGCGACATGAAATACGTTTGTTTCATCTGTGACTACACCTGCAGCTCTGAGAACAGACTGAAACACCACAAAATGTCGATAAAACATCTCAACATGAAGGAGTACCTTTTAACGGGTAAACCGTTAATAGAAGAAGAACCTTCCACGTCTAAGAAAGACAAGATAAAAAGTGAAAGGAGTGTTAAGAAGAGGAAAAAAGATAAAGAAGCTTCTGTGGAGTGTGATATTTGTGGGGAGAAGTTTACCAGTGACGTTGAAATGGAGGAGCATAAACAGACTCATCCGTTTATTGAGTTTCCGAATGATGATAAGCCGAGTAGAATATTCTTTAAATGA
- Protein Sequence
- MTVIKEKIYINPFYLQDDIKNFPAIVKDESELTVTETHLISNKVINTTSTITNTLDGIIESQTTKTLIMEIHPVSQQNLKMGNPEEILPTNIYTMDEEPFQLNSITGNYLSLEQEAYSLLRTKRKVITKEGNFQCTKCPKTYTKQSSLTNHYKIHDRIDRMANGIKKRISTMKMKREELEKQAEYEVEEKEQIIKKEDGDGYYCTCGKVFRRRSRMETCLRSHTDYSDEKFYACNTCDKKFKSKELLIYHRNRQHRKKYPCKFCPTDYHTQKELFKHLQVHQKVQLIEYKVILEVAKGNQGLQCLLCSKSCSNLADFKTHIMEGHKEPYKCPHCKESSPKLTDFASHVRKTHPDVCSESVLDVLEAFAKLVKAWKCEECGKQFHKADKLALHQVEEHTPDMKNEQHFQCEDCQRVFISLQGLNSHRRMHHRPETTEAPEPEEVGVMCLECRKMCVDMNALTSHMRLHSMDRKYPCKYCDFRFTTPQKRKAHAEVHTGDMKYVCFICDYTCSSENRLKHHKMSIKHLNMKEYLLTGKPLIEEEPSTSKKDKIKSERSVKKRKKDKEASVECDICGEKFTSDVEMEEHKQTHPFIEFPNDDKPSRIFFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -