Haes020108.1
Basic Information
- Insect
- Hemithea aestivaria
- Gene Symbol
- -
- Assembly
- GCA_947507615.1
- Location
- OX382338.1:7421168-7435061[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.15 12 7.2 2.0 6 20 12 26 6 28 0.86 2 12 0.03 2.4 9.4 0.1 3 21 35 53 33 54 0.94 3 12 0.47 37 5.7 0.6 1 12 198 209 198 212 0.89 4 12 0.00013 0.0099 16.9 3.3 1 23 375 397 375 397 0.98 5 12 0.00064 0.05 14.7 1.0 1 23 412 434 412 434 0.99 6 12 7e-06 0.00055 20.9 2.1 2 23 483 504 482 504 0.96 7 12 0.00039 0.031 15.4 1.7 1 23 520 542 520 542 0.98 8 12 1.4e-06 0.00011 23.0 4.5 1 23 548 570 548 570 0.98 9 12 0.0014 0.11 13.7 5.6 1 23 576 598 576 598 0.97 10 12 9e-06 0.0007 20.5 0.4 1 23 604 626 604 626 0.98 11 12 0.00056 0.043 14.9 0.3 1 23 630 652 630 652 0.98 12 12 0.00011 0.0089 17.1 0.1 1 23 660 683 660 683 0.97
Sequence Information
- Coding Sequence
- ATGGAAAATCTAACATTGAATTGCCCTTTATGCTGCCACAAGAAGTTTACTTCGAAACAATCTTTGGTTGAACACCTATCCAATATTAATGAGCATTTGTTTTGCCCTGTTTGTAGTAATAAAGTTACATCGCTCTCCCAGCTAACAGAGCACTTACGCCTTGATAATTGTATGCCTATAAATTATGGACAAACTATACAGTTTGAGGATAGTACGGCGAACACACCAGCTAATGAATATCAGAATGATAATAATATTCAGATAAATTTTAAACCTGTTGATCATAGAGAAATACCAAGTACAGATATGGTGACGGACAATAATTTCACTCAGAGCTTGGCGATGGATGCAGATGATAACAAAATGCAGTTTGACCTGTGTCTGCAATCACAGGATCTGAAGTTCATAAAGGAAGATGGAGAGAATAGGTTTATCTTCTTAACTGGTGACCAGGATACCCTGAATTCTGAGGGACTGGTTACCAAGCAGAATAAAGATGGCACTATATCTGTGACTACATTAAAAGATATAAAAATGGGCTCAGAATCAGTGGCTTCCAAGCAAATAGTAGAAGAACAAGTAGTTCAGGAGTACAGTTGTAGTATGTGTAAAATGACCTTCACCTCTGTGTATGATCACATCAACAACTATCATGCTGATCAGGATGTTGTTGTAGAGGGAGCAATGCCAGAATCCGACGATACGTTACCAATAGAATACGAGCCAGACGACCAAGAGGACAACAACGACAAACAAGCATCTCGCCGAGTCATTACAGACACGGGTGACATCGTAGAGGCGCCAATAGTTGTCAAATCTTTTAATCAGATGGAGCATGTTGAAGATACTCCAATAGTAGCTCAAACAGTGCCAAATAAACTGAAAGAGGTGCCAGAGAAACAAGGACGTGGGAAGCGTTATGTGCAAATAGATAAACTGTGCGACAGTGTTATTAGAGAGCTGAAGCCTAATCAAAGGAACGGTCCAAGTCACAAGGTGGTGATAGCAGCGCCGCTTGTGATGCCGGACGGAGAGAGTGTGAAGATGTACCACTGCACCTCTTGCGATATGTATGGAAACCAACTGGCTGACTTCAACACACAGTCTTGCAAACCAGCCAAATATGCGTGTACCCATTGTACGATGGTGTACGACAATTCCAAGTCGTTATGCGCACACATGAAAGTACACAAGGACAAATCAGTGGAGAACGTCGGAAGCATACCGGAGCTGTATGTGTGTGAAATATGTTCTACAGTCTTCCTTACTAATAAGTCATTGAAGCTACATAAACGGATGCACGAACCTGTCAAAGCTCGTCCAATCGACCCGCCTCGCAGTTCCTCGTCGAATGGAGCCCGTTACAAGTGCGTAACTTGCGACAAACTCATCCCCACCGACTACCGCGAGATTCACAGCAAGTCGCACCGATACGACAACATGCTCAACTGTACCATATGCAACAAGAAGTTCACCTCGCATGACTACCTCGAGATGCACATGAATGTACATAACTTGGACAAGGCTCCAGAAAAGAAATCAGACAAAACGTTACCATACAGCTGTGTATATTGCGACAGGAAATTCGCACGACCACACGAAAAAGTTAAACATGAACGAATACATACCGGAGAGAAGCCCCACTCGTGTGAGATATGCGGCAAGTCGTTCCGCGTGTCGTACTGCCTCACTCTGCACATGCGCACGCACACCGGCGCGCGACCCTACGCGTGCCCGCACTGTGATAAACGATTCAAAGCACACAGCGTGTACAATCACCACCTATTAACACATTCAGAGGTGCGCGCGTACAAGTGTCCGTTTTGTCCGAAAGCGTTCAAAACATCAGTTCAACTGGCCGGACACAAGAACTCACATACGAAGCCGTTTTCCTGTACACAGTGTAATAGGCCATTCGCATCTCTCTACGCAGTAAGAGTCCACACAGAGACTCACAACAGACAAAACAACTTAAAGTTCAGATGTTCATTATGCGGCGCAAGTTACGCGCGCGCGTTCGCTCTCAAGGACCATATCAAACAAGTGCACAAACAGGACACGGAAAAGGATCCTTTGACTGGCACTGATGATTGGATATCGAAAGGCACATCCGAGGCGGACAAAGACCTCGGTGAAGAAGAGGTAACCGTACTGGAAATGCCATCAGAATTGATAGTTCCTAACTAG
- Protein Sequence
- MENLTLNCPLCCHKKFTSKQSLVEHLSNINEHLFCPVCSNKVTSLSQLTEHLRLDNCMPINYGQTIQFEDSTANTPANEYQNDNNIQINFKPVDHREIPSTDMVTDNNFTQSLAMDADDNKMQFDLCLQSQDLKFIKEDGENRFIFLTGDQDTLNSEGLVTKQNKDGTISVTTLKDIKMGSESVASKQIVEEQVVQEYSCSMCKMTFTSVYDHINNYHADQDVVVEGAMPESDDTLPIEYEPDDQEDNNDKQASRRVITDTGDIVEAPIVVKSFNQMEHVEDTPIVAQTVPNKLKEVPEKQGRGKRYVQIDKLCDSVIRELKPNQRNGPSHKVVIAAPLVMPDGESVKMYHCTSCDMYGNQLADFNTQSCKPAKYACTHCTMVYDNSKSLCAHMKVHKDKSVENVGSIPELYVCEICSTVFLTNKSLKLHKRMHEPVKARPIDPPRSSSSNGARYKCVTCDKLIPTDYREIHSKSHRYDNMLNCTICNKKFTSHDYLEMHMNVHNLDKAPEKKSDKTLPYSCVYCDRKFARPHEKVKHERIHTGEKPHSCEICGKSFRVSYCLTLHMRTHTGARPYACPHCDKRFKAHSVYNHHLLTHSEVRAYKCPFCPKAFKTSVQLAGHKNSHTKPFSCTQCNRPFASLYAVRVHTETHNRQNNLKFRCSLCGASYARAFALKDHIKQVHKQDTEKDPLTGTDDWISKGTSEADKDLGEEEVTVLEMPSELIVPN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -