Haes022060.1
Basic Information
- Insect
- Hemithea aestivaria
- Gene Symbol
- -
- Assembly
- GCA_947507615.1
- Location
- OX382335.1:3292021-3302828[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 6.8 5.3e+02 2.0 0.1 1 23 82 105 82 105 0.91 2 21 0.76 59 5.0 0.1 2 23 109 130 108 130 0.95 3 21 0.0096 0.75 11.0 1.0 2 23 134 156 133 156 0.91 4 21 2.2 1.7e+02 3.6 1.3 3 23 161 182 159 182 0.91 5 21 0.27 21 6.4 2.6 2 23 369 391 368 391 0.95 6 21 1.2 97 4.3 0.2 1 20 399 418 399 420 0.95 7 21 0.01 0.8 10.9 1.4 3 23 431 451 430 451 0.96 8 21 8.1 6.3e+02 1.8 2.1 1 23 467 490 467 490 0.91 9 21 0.0012 0.092 13.9 0.9 1 23 499 522 499 522 0.94 10 21 0.33 25 6.2 1.2 8 23 567 583 564 583 0.94 11 21 3.3 2.6e+02 3.0 0.6 2 23 593 615 592 615 0.89 12 21 1.5 1.2e+02 4.1 1.6 1 23 621 644 621 644 0.92 13 21 3e-05 0.0023 18.9 3.5 1 23 650 672 650 672 0.96 14 21 1.4e-06 0.00011 23.1 1.4 1 23 679 701 679 701 0.98 15 21 8.8e-05 0.0069 17.4 2.3 1 23 706 728 706 728 0.96 16 21 0.0023 0.18 13.0 2.6 1 23 734 756 734 756 0.99 17 21 1.3e-05 0.001 20.0 2.3 1 23 762 784 762 784 0.97 18 21 7.9e-06 0.00062 20.7 0.7 2 23 791 812 791 812 0.98 19 21 0.00085 0.066 14.3 0.2 2 23 822 844 821 844 0.96 20 21 0.0013 0.1 13.7 0.5 1 23 849 871 849 871 0.96 21 21 0.15 12 7.2 1.6 1 23 877 900 877 900 0.93
Sequence Information
- Coding Sequence
- ATGTCTTCCGAAGATTCTGACGACGAGCCCCTATCTAGTTTTGCAGCTATAAAAAATGGAAACCAGACAGAAAATGAGAAATTACGAGACTCCAGAACAGTCCCCACTGATGACAAGGTTCACTGGGATAAACATTCTACTAATGTCTCCATTGACATGTGGTCTGCTGTTGAAGAACAAACCTCGGTCGAAAGACCCACCGACGTGTGGATGTATTTAAAAGATTTCAATGCTACAGGACCCTACAGTTGCTTACTGTGCTCAGAATGGTTCATAAACAAGTCCAAAATTGTTATTCATTATGTAATTAATCATCAGAAAGACTACTGTGGAATTTGCAGATATTTTGTGCCAACCCGTGAAGCATGGTGGGAACACCAAAAGTTCCACACTCCATGGAAATGTTCACAATGCTCAGAAATGTTCATGACACAAACAGATCTACGAGAACATTTCAGCAATCAACATCAACTCATTCACTGCAGACTTTGTTACTTACGTGTGAGCGACAATGACCAATACAACATACATTTATATCAAAAACATGGTGTCACTAACATATCTAGTAAACACCATGATGTTTTCTGGGATTTTGAGTACGAAGGTAGTCCGAAATTCATCTGCTTATTATGTATGAAACCAAACACAAATCTACGGCCATTTGTAGACCATTTTTTATCTTACCACCATTTCACTCTAAAATGTTTATCCTCTCTCATATGTGGAACTGATTTACAATTGTATATCAAAGGGTTGGATTTGACACCAGAGTTTATTGAAACACAATTGAAAAATATAGAACATTACGGATATGTTGACTTAAAGAAACCGATCATCAAAGAAGAGCCACGAATTAATGAGAATGTAATGCCAATCGATTGTAATCCAAATACAGACATTGATGCAATCGATTTTGTGGAAGAATCAAATATCAATGACAAAGAAACATACAAAGGAGACGAAGATTATGATATTACATTACTAGAACTAATTCCCATACAAAACTGCTACTTTGAATATATAAATGAGATACTAACACAAGTCACATCAAACGTAATGCCACAGAATTCAAATGTAAATTATGGGACAACATTTCTACCTATATCATGCTGCTATTGCCCAGAAGTATGTAAAAATGATAATGCATTTATATATCACATGAGTAAAATGCATTTTGTACGAACTTTACCGAAATACTCGTGTAGAGTGTGTACGAATTTGTTTTACACAGGCAATGAGTTAAAGAACCATATTACTGAAGAAATGGGAGAATTTGAGGATCTTTGGCTTTGCCAGTTTTGTGACAAAGAATTCAATAATAGAGAAGAAACTCGGAAACACTTGACCGAGCATTGGAATGTGATTGAATATGACAACTGTTTTAGTCCACATTTGGGCTTTAAATGTTCCTTTTGTCCAACTTTGTTTTGGAATGAAACTGATAGGGAGAAGCATCATCTTAGAGTGCATTTTGAGAGGAATAAAAACAGTTTTTATAAATGTACTGTTTGTGATGAAATGTTTGGGGATAGAGTTTGGTTTACTCACCATTACATAGAGAACCACGATTCAGTGTTATACCTCCTTAAATGCTGCATATGCTGTGATGTTCTAAACCCTAATGATGCCAGGACACATTTGATTCAATACCATCCTGAAGCTAGGAAGATATTCTGCTCGATGCCACCTTGTAAATACAAGCCGTTCACTCAAAAGAAGTCTTTTAATATGCATCTTAAGACGAAACACAATCCATCGTACCGCTCGCCTCACCTTACATGTGGTCCGTGCGGTCAACAGTTCACATCAATGCAAGCCCGTGCAGCACATATGTCACATAAACACGGCCTATCAAGGTGCTACAAGTGTAACCTTTGTAAGGAGACCATGAAAACAATGGATGAGAGAAAGATGCACTACCTTCTCCGTCACCCAGGCCGCTACCAGCACCAATGTCCGCTGTGTGACAAGTCGTTCCGCTACAAGTCGTCCTTGTATATGCACAAACAGGAACACGCGCCCAACAAACAACATTACACTTGTGACTTCTGCGGGAAGTCGTTTGTGAAAAAGGATTCATACCGAGAACACATGCAAATCCACGACACGCCACGTCACGCGTGTTCATACTGCCCGATGCGATTCGTACAACGATCTAATATGCTACGTCACGAACGGAGACATACTGGCGAGCGGCCGTACACTTGTAGACTGTGTCCGAGGACTTTCGCCGACAAGGGGGCTTGCACTTCACATTATAGGACACACCAAAAAGAGTCAGCGTTTGCGTGCATGTATTGCAACCAAACGTTCGTTCAGAAGTCCAAATTGACGTACCATATTCGAAAGCATACAGGAGAAAATTTAGAAACATGTGACATTTGCTTCAAGAAATTCACGAGCGCCGGTTCGCTGCGTGAACACATGAAGGTGCACTTGAGAAACAAAATGAAGAAGACTGTCAAATGCCCACTTTGCAAACGAATGTACCCCGACGAGCAGTCGATGTTGCGTCACATGCGTGCGTCACACAGCCGCGGTTCGCACGCCTGTCCGCTGTGTCACAGGGAACTGATCTCCGCTAGTTCATTGAGGGAACATATCGTCACACACGCCAAAGTTAAAATGTATAGGTGTCGCCTCTGCCCCAAGTCTTACCACTCAAAAAGGCCAATACTAAAACACGTAGAGATAAGACACAAAGTGGAACCAAACCTTATAAATATGACTGTCCATTACCGCCGCTTAGCACTTCACGAATGCAAAATTGGCTTAGATGAAGCCACGTTAAAAAGAATATTTTCACCGTCGAAAAGGAAAAATATCATAGAAACACCCACAGGCGTTCCTCATTCTAGTCAAAATGAAGATCAAAGTGAACAAAGTCACAAAATCGAAATAAAAATTGAAATGGAAGAACCGCTTAAACTGGATTTTGTGAATGTGAAGAGCGAATTTGTAAATGATGATGATACAATAAATGATTTGTAG
- Protein Sequence
- MSSEDSDDEPLSSFAAIKNGNQTENEKLRDSRTVPTDDKVHWDKHSTNVSIDMWSAVEEQTSVERPTDVWMYLKDFNATGPYSCLLCSEWFINKSKIVIHYVINHQKDYCGICRYFVPTREAWWEHQKFHTPWKCSQCSEMFMTQTDLREHFSNQHQLIHCRLCYLRVSDNDQYNIHLYQKHGVTNISSKHHDVFWDFEYEGSPKFICLLCMKPNTNLRPFVDHFLSYHHFTLKCLSSLICGTDLQLYIKGLDLTPEFIETQLKNIEHYGYVDLKKPIIKEEPRINENVMPIDCNPNTDIDAIDFVEESNINDKETYKGDEDYDITLLELIPIQNCYFEYINEILTQVTSNVMPQNSNVNYGTTFLPISCCYCPEVCKNDNAFIYHMSKMHFVRTLPKYSCRVCTNLFYTGNELKNHITEEMGEFEDLWLCQFCDKEFNNREETRKHLTEHWNVIEYDNCFSPHLGFKCSFCPTLFWNETDREKHHLRVHFERNKNSFYKCTVCDEMFGDRVWFTHHYIENHDSVLYLLKCCICCDVLNPNDARTHLIQYHPEARKIFCSMPPCKYKPFTQKKSFNMHLKTKHNPSYRSPHLTCGPCGQQFTSMQARAAHMSHKHGLSRCYKCNLCKETMKTMDERKMHYLLRHPGRYQHQCPLCDKSFRYKSSLYMHKQEHAPNKQHYTCDFCGKSFVKKDSYREHMQIHDTPRHACSYCPMRFVQRSNMLRHERRHTGERPYTCRLCPRTFADKGACTSHYRTHQKESAFACMYCNQTFVQKSKLTYHIRKHTGENLETCDICFKKFTSAGSLREHMKVHLRNKMKKTVKCPLCKRMYPDEQSMLRHMRASHSRGSHACPLCHRELISASSLREHIVTHAKVKMYRCRLCPKSYHSKRPILKHVEIRHKVEPNLINMTVHYRRLALHECKIGLDEATLKRIFSPSKRKNIIETPTGVPHSSQNEDQSEQSHKIEIKIEMEEPLKLDFVNVKSEFVNDDDTINDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -