Haes024957.1
Basic Information
- Insect
- Hemithea aestivaria
- Gene Symbol
- -
- Assembly
- GCA_947507615.1
- Location
- OX382349.1:9322260-9324992[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00032 0.025 15.7 5.7 1 23 139 162 139 162 0.95 2 18 0.00038 0.03 15.4 2.2 1 23 171 194 171 194 0.96 3 18 0.002 0.16 13.1 0.7 1 23 206 229 206 229 0.96 4 18 0.004 0.31 12.2 3.0 1 23 238 261 238 261 0.97 5 18 1.5e-05 0.0012 19.8 0.9 2 23 274 296 273 296 0.96 6 18 0.00011 0.0087 17.1 0.6 2 23 326 348 325 348 0.97 7 18 0.0051 0.39 11.9 2.0 2 23 358 380 357 380 0.96 8 18 0.55 43 5.5 0.7 2 21 385 404 384 405 0.90 9 18 1.5e-05 0.0011 19.9 0.9 2 23 410 432 409 432 0.96 10 18 0.0016 0.12 13.5 3.0 3 23 442 463 441 463 0.97 11 18 5.6e-05 0.0043 18.0 1.8 1 23 468 491 468 491 0.97 12 18 2e-05 0.0015 19.5 2.0 1 23 503 526 503 526 0.98 13 18 0.0061 0.47 11.6 3.4 1 23 546 569 546 570 0.92 14 18 1.7 1.3e+02 3.9 0.5 2 23 576 596 575 596 0.91 15 18 0.0096 0.75 11.0 2.1 2 23 602 623 601 623 0.97 16 18 3 2.4e+02 3.1 0.7 2 23 630 653 629 653 0.89 17 18 0.0038 0.3 12.3 0.4 1 23 689 711 689 711 0.97 18 18 0.081 6.3 8.1 1.9 1 23 717 740 717 740 0.97
Sequence Information
- Coding Sequence
- ATGGAGGAAAACAGAAAGGACCCCACAACCTTTCTCCCAGAAGAGGAGATGTCCTACGAAATCAAGAAGAAGAAGAAGAAAAAAAAGAAGCAGCAAGAAGATCCCTTCAAGGATATAGAACAGAAGTTCGCTATAGATAGAGAACCAGATATTACTGCTCTGGACCCTGATTTAGGGCCTTTGCTTGACCCTGAGGTCACTATTAAAGTGGAGAATATAGAAGTTAATTTGGATTTAAATGATTACATGTACAATGACTGTGACAGTCAAAACTACGACACAGAATTAGAACCTATAGTGAAGTTGGAAGAACAAAACAGGGATGCTGTTCTACTCACTTTTGAGAGTGTTATCAGTGAAAAATTACCGTTAGACATTGTCAATCCTAAGGTGGAAGAGACCGAAACAACCAACCACTTCTGCAAAGTGTGCCATTTAGTCTTCAAAAACCCTAAGTCACTCAGAATACACCAGAAAAGAAAACACAAGCGTTTCCGTACATACTTTGATCACATTTGTGACCACTGTGGTATGTCATACGAATTAAAGAGTAGTCTAGTCGCACATTTAAAGAGAAAACACGGACCGGACGCGAATAAAGATGATAATATAGAACACGCATGTGATATTTGTGCTCTAGTCTTCAAAGGATCGGCCAGATTACGGATGCATATGCGAAGGAAGCACGGATCGTACGAAGAACGATTCAAACATGTTTGTGAAGACTGCGGCTTGACTTACGATAAAGAATGCAGTTTATTAGTGCATAGGAGAAGAAAGCATAGTGGTAAACCTGCTGTCAAGTCAAACACTTGGTTGCAATGTCCGTTTTGCCCGAAAATGTTTCCCCGTAGAGAAAGTTACTCAAGACATATTCAAAGGAAGCATAGAACAGATGAAGATGATGAAAATGGAACGGCTGAATCGAAGGACTTAATGAAAAATAGTGTGAAGATTGAAATATCAGGAGAAGTTACGTGTAGTGTGTGTCAATCTGTTTTTTCATCGCCAATGTACTTAAAACTTCATATGAGACGGAAACATAATGTTTTGTTGGATGACTTTAGATTGAAGTGCAAGTTTTGTAGTCTTTCATATGATAAAGTTGAAAGCTTGAAACGGCATGTACGAAGAAAACATGATGTAGGGACGTACTGTGAAATATGCAGTAAACAGTTCCTTTCCCGAGATTTATTCCTTGCTCACACACATACAAAGGTTGTGAAAGAATGTCATATCTGCGGACTCATATTTGCTACTCAAGCAAGTCTGTCAAAGCATTTAAGGTATACCCACAAGATAGATGGTGACAAGTCAGTCTTTTGCAATATCTGCCAAGAAGGTTTTTACCAGAAGCATCAAATGAAAAAACACTACATGAAAGTGCATTTAAAAGTATCTTACACATGTAGTATTTGTACAAAAACTTTTAATGCAAGAGAGAGTTACAAAAGGCACCTGATGATTAAACATCCGGAAAGCTTTTTCGATGAAGCAAAACAGCCGTACAAATGTGAAAAATGTGCTAAGGCATTCGTCAACGAATTTGAATTATGTAGACATATAAATACTCAACATAGAGATAGTATGGATGTATTGATAAAACAAGAAAACAAAGATGTTGTTAAAGACTTGTTCCAATGCACTAAATGTCCTGAAGAATTTCAGACGTGGGAGTTATTGAGGGAGCATTTTGAGCAATGTCACCACTTGGCTGAAGAAACTCAGTGTCAAAAATGTGGTCAACTTCTCCCTCGTTCGGAATTACCAAAGCATATGAAAAGCCACCAAGAATCGGATATGTCTTGTAAATACTGCGAGTTTAAGACTAAGAGTCGTATAAGTTTGACACAGCATTTACTGAGACATAAAAATGCTGAGACATTGCAATGTGGTTACAATGGTTGTAGATACAAAACTTTTTACGAAGATGCAATGGCTAAGCATAAAAGAAGGCATGTAGACTTGGGTGTTAAACTACAATGTGCAAGTTGTCCGTTCCAAACAATGAATAAATACATCTTGAGATATCATGAAGAAGCACATTCTACAGGCAAAAAGAAATATATGTGCGATAAATGTGACTATGCCACGACTTTGCCAGCTAACTTAGTCCAACATAAATACAAGCATTCAACAGAGAAACGGTTCAAATGTGAAGTTTGTCCGTTTGCAACTAAATATAATACTTCGTTACGTTTCCATGTGAGAAAGAAACATCGTGATCTTCCGTCTTTGTCATAG
- Protein Sequence
- MEENRKDPTTFLPEEEMSYEIKKKKKKKKKQQEDPFKDIEQKFAIDREPDITALDPDLGPLLDPEVTIKVENIEVNLDLNDYMYNDCDSQNYDTELEPIVKLEEQNRDAVLLTFESVISEKLPLDIVNPKVEETETTNHFCKVCHLVFKNPKSLRIHQKRKHKRFRTYFDHICDHCGMSYELKSSLVAHLKRKHGPDANKDDNIEHACDICALVFKGSARLRMHMRRKHGSYEERFKHVCEDCGLTYDKECSLLVHRRRKHSGKPAVKSNTWLQCPFCPKMFPRRESYSRHIQRKHRTDEDDENGTAESKDLMKNSVKIEISGEVTCSVCQSVFSSPMYLKLHMRRKHNVLLDDFRLKCKFCSLSYDKVESLKRHVRRKHDVGTYCEICSKQFLSRDLFLAHTHTKVVKECHICGLIFATQASLSKHLRYTHKIDGDKSVFCNICQEGFYQKHQMKKHYMKVHLKVSYTCSICTKTFNARESYKRHLMIKHPESFFDEAKQPYKCEKCAKAFVNEFELCRHINTQHRDSMDVLIKQENKDVVKDLFQCTKCPEEFQTWELLREHFEQCHHLAEETQCQKCGQLLPRSELPKHMKSHQESDMSCKYCEFKTKSRISLTQHLLRHKNAETLQCGYNGCRYKTFYEDAMAKHKRRHVDLGVKLQCASCPFQTMNKYILRYHEEAHSTGKKKYMCDKCDYATTLPANLVQHKYKHSTEKRFKCEVCPFATKYNTSLRFHVRKKHRDLPSLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -