Haes017655.1
Basic Information
- Insect
- Hemithea aestivaria
- Gene Symbol
- L
- Assembly
- GCA_947507615.1
- Location
- OX382324.1:9538402-9573481[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.6e-06 0.00012 22.9 1.7 1 23 86 108 86 108 0.99 2 17 0.67 53 5.2 5.8 1 23 114 136 114 136 0.97 3 17 9.1e-06 0.00071 20.5 4.1 1 23 142 164 142 164 0.99 4 17 2.8e-05 0.0022 19.0 0.1 1 23 170 192 170 192 0.98 5 17 8.7e-06 0.00068 20.6 0.1 2 23 208 230 207 230 0.96 6 17 3 2.3e+02 3.2 0.2 3 23 254 276 252 276 0.79 7 17 0.32 25 6.2 0.0 3 23 325 345 324 345 0.97 8 17 0.093 7.3 7.9 0.0 3 23 360 380 359 380 0.94 9 17 0.0027 0.21 12.7 0.2 1 23 388 411 388 411 0.93 10 17 0.035 2.7 9.2 0.1 1 23 416 439 416 439 0.92 11 17 0.041 3.2 9.0 0.1 1 23 493 517 493 518 0.87 12 17 0.00075 0.058 14.5 0.0 2 23 572 593 571 593 0.96 13 17 0.062 4.8 8.4 0.0 1 23 601 623 601 623 0.97 14 17 1.5 1.2e+02 4.0 1.5 2 23 631 652 630 653 0.94 15 17 0.94 73 4.7 0.3 1 23 733 755 733 755 0.94 16 17 0.0037 0.29 12.3 0.1 1 20 763 782 763 785 0.95 17 17 0.34 27 6.1 0.4 1 23 792 814 792 814 0.94
Sequence Information
- Coding Sequence
- ATGATCATGCTATTCAAGGGCAACAGCAGCCGGCTGGAACATCTCATAGAGAAGATACAAGCTAATAAGGAAAATCACGACGTTTCTTCAGAAGATATAAAAGAGGCACTGGGCAGCGTGGGAAGCGCGGCGGGCAGCTCCTGGCCGTCGTCGACGCCGGAGCCGTCCCCGTCGCCGGCCTCCACCCCCTCGGTGGACGCCGCGGACGCTGACGCTGACCCTCCTTTCACGCTGGGAGCGACCGAACACACGCCCTACCAGTGCCAGTTCTGCGACAAGGCCTTCCCGAGGCTCTCCTATCTTAAGAAACATGAACAGACGCATTCAGACCAAATGCCGTTCCGGTGCGAGTTCTGCTCGCGTCTGTTCAAGCACAAGCGGTCACGGGACCGGCACGTCAAGCTGCACACTGGCGATCGCAAGTACCGCTGCGCGCATTGCGAGTCTGCATTCTCTAGGAGCGATCACCTGAAGATCCACATGAAGACGCACGACAATCAGAAGCCGTTCCAATGCACGGTGTGCAACCGAGGGTACAACACTGCAGCGGCTCTGACGTCACACATGCAGGGACACAAGCGCGAGAGAGAGGGACGGGAGCCGGACAGGAGGAGAGCTCTGCGCTGCTTGAGATGTGGGGAAGCGTTCCGAAGGCCCGATCTATTGCAGGCTCACATGACAACAGCCCACGGAGTGGACACAGCATCTCTGACTCCTCCGCGAAGGGTCGCGTCCCAGCCGCCGCCAACACTGCTCGCCTGCATGTACTGCACTCGAGACACCTTCACCAGCATGGAACAACTGCAGCTGCACGTGCGCGCTGCTCATACTGCGCTACTCAACGGAGAAGGCCCGACTGTCGACCAGCCGGCACCGACCGATCTCAGCCGTAGAGCTTCCGATGACGCACCTCCTATTAAACGCCCGCGCTCCGGGACGCCACAGATCAAGCTGTCTCCGAACACGCTCCTGTGTAATCAGTGCGATGCTGCCTTGCCCGACTTTGAAGCGTTTCGTGCTCATCTAAAAGGGCACTTGGAAGAAGGCGGGGAAGCAACTCGAACGAGTCCAGCGCCGTGCGTGCACTGTGGTGCGACGTATGCAGATGCGGCGGCTGCTGAAAGACATCTCACAGCGCATTACCTTGCTGTGTCCTGCGAGTACGCCTGCCACAGTTGCGCTCGGAGTTTCCCCGCACCTGATGATCTGCAGAAACATCTGCTTGACTTGCACGCCCATCATCTTTATCGATGTTCGCTGTGTAAAGAGATCTTCGACTCGAAAGTTGCCATTCAGGTACATTTCGCGGTGGCGCACAGCGGCGAGAACAAGGTGTGGATGTGCCGCGGGTGCGGCGGTGGCGCGGCGGCGCTGCGCTCCGAGGCGGAGGGCGCGGCGCACGTGCGGGCCGCACATGGAGGAGCCCGCTGTACTTGCGGCGCACTGCTGGCCGGCCCCCGTCTGCGCCCGCGCGCTTACGCCTGCCCTGCTCCCGCGTGTACTGATGCCTTCGCCGTGCAGTACCTGCTCGAGCGGCACATGCAGATACACCACGCCATGCCGCATCAGGGTATGAACGGCGACATGTCCCGATCCAAACGCGTGGAAAACAACAACGGCGCAGACGAAGGCGCGTGCTCCCCCTGCACGGGCGGCAGTGGAGACGCTCCTCCAGCAGAAGAGAGGAGAAGGAAGAATGGAGCCGTGGCCTTACAGTGCGCGTACTGCGGCGAACGAGCGAGAACGAGGGCTGAGTTGGAGGCTCACACTCGAGCGCATTCCGGCGCAGCCACTGCGAGGCATAAATGCCTCATATGTGACGAGGTGCTGCCGTCTGCTGCTGTTCTTGCTGAACATAAACTTACACATTGCAAGGTGGTAGTAGGAGACACGTGCTCTCGGTGTCGATCCAGGCTGGTGTCAGAGGAATCGTTCGTGGCTCACATGTCCCGGCACCACCCCGCTCTGCCCGCGCCCTGCGTTGTGTGTCGACAGACGCTCGCCTCCGAGCCTGAGGCGAGGTTGCACGCTCGCTTCCATCTGAGGGTCGCTGACGATGAACAGAGATGTGCGATATGCCTGCGCGCGCTCCCCGCAGGCTCGAGTAGAGGCGGCGAGGCAGCGCGCGCGTGCGCAGCTTGTTACGCGCGACACGCGGCACCGAGGGCTCCGCCCGTGCCTCCCGCCTCTGCTGACCACGACTGTCGCCTGTGTCGCCGGGCTCTCGGATCACCTACACGGTTACAGGCGCACCTAATCGAGCACACATTCGCGGGTATAGGAGCATTCACGTGTTACCTCTGCTCGGCCGTGTTTACAAGCGCGGCGGGCCTACAGCGCCATCTACCGGAGCACGCCGCCGCACCGCGACCGTACGACTGCGCCCGGTGCGACCTCAAGTTCTTCTTCCGAGCAGAGTTAGACAACCACGCGTTCGTACATCTAGAGGAAGCTGAGATAGCACAAAGAGCGTTCTACGAAGCTTACGCCCGAGGAGCGGCCGCCTGGGCAGCTCTCGCCCCGCCAACCCCAGAAACTCAAGAAGTCAAACAAGAGCCTCAAGTGAAAGAAGAACGGAATGATGAGTATATAGAAGTCTCGTCTCCTCCTCCCCCAGCTCCCGTTCGAACCCCTACCCCTGTCTCGCCAGCTAAGACTGAGACAGTCGTGAAGCAAGAAAAACCTGACGATGATGCTGAAGTTTAG
- Protein Sequence
- MIMLFKGNSSRLEHLIEKIQANKENHDVSSEDIKEALGSVGSAAGSSWPSSTPEPSPSPASTPSVDAADADADPPFTLGATEHTPYQCQFCDKAFPRLSYLKKHEQTHSDQMPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKREREGREPDRRRALRCLRCGEAFRRPDLLQAHMTTAHGVDTASLTPPRRVASQPPPTLLACMYCTRDTFTSMEQLQLHVRAAHTALLNGEGPTVDQPAPTDLSRRASDDAPPIKRPRSGTPQIKLSPNTLLCNQCDAALPDFEAFRAHLKGHLEEGGEATRTSPAPCVHCGATYADAAAAERHLTAHYLAVSCEYACHSCARSFPAPDDLQKHLLDLHAHHLYRCSLCKEIFDSKVAIQVHFAVAHSGENKVWMCRGCGGGAAALRSEAEGAAHVRAAHGGARCTCGALLAGPRLRPRAYACPAPACTDAFAVQYLLERHMQIHHAMPHQGMNGDMSRSKRVENNNGADEGACSPCTGGSGDAPPAEERRRKNGAVALQCAYCGERARTRAELEAHTRAHSGAATARHKCLICDEVLPSAAVLAEHKLTHCKVVVGDTCSRCRSRLVSEESFVAHMSRHHPALPAPCVVCRQTLASEPEARLHARFHLRVADDEQRCAICLRALPAGSSRGGEAARACAACYARHAAPRAPPVPPASADHDCRLCRRALGSPTRLQAHLIEHTFAGIGAFTCYLCSAVFTSAAGLQRHLPEHAAAPRPYDCARCDLKFFFRAELDNHAFVHLEEAEIAQRAFYEAYARGAAAWAALAPPTPETQEVKQEPQVKEERNDEYIEVSSPPPPAPVRTPTPVSPAKTETVVKQEKPDDDAEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01437318;
- 90% Identity
- -
- 80% Identity
- -