Haes006170.1
Basic Information
- Insect
- Hemithea aestivaria
- Gene Symbol
- -
- Assembly
- GCA_947507615.1
- Location
- OX382327.1:2563543-2590109[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 3 2.4e+02 3.1 1.2 1 10 264 273 264 286 0.86 2 18 0.00013 0.0099 16.9 2.4 1 22 291 312 291 315 0.91 3 18 0.0014 0.11 13.6 1.4 2 23 403 425 402 425 0.93 4 18 0.0052 0.41 11.8 0.2 1 23 431 453 431 453 0.96 5 18 0.0089 0.69 11.1 0.2 1 23 461 484 461 484 0.90 6 18 3.8e-07 3e-05 24.8 3.6 1 23 489 511 489 511 0.98 7 18 0.00011 0.0087 17.1 2.5 1 23 517 539 517 539 0.97 8 18 8.7e-05 0.0068 17.4 3.5 1 23 545 567 545 567 0.96 9 18 1.4e-07 1.1e-05 26.2 0.2 1 23 573 595 573 595 0.98 10 18 0.044 3.4 8.9 8.5 1 23 601 623 601 623 0.98 11 18 0.044 3.4 8.9 8.5 1 23 636 658 636 658 0.98 12 18 0.044 3.4 8.9 8.5 1 23 671 693 671 693 0.98 13 18 0.0016 0.12 13.5 4.2 1 23 735 757 735 757 0.98 14 18 7.2e-06 0.00056 20.8 1.2 1 22 763 784 763 787 0.91 15 18 0.77 60 5.0 0.0 2 21 889 908 888 909 0.93 16 18 0.33 26 6.2 0.1 1 21 916 936 916 939 0.92 17 18 0.00043 0.034 15.2 0.9 1 23 949 971 949 971 0.98 18 18 0.011 0.88 10.8 4.2 1 23 979 1001 979 1001 0.99
Sequence Information
- Coding Sequence
- ATGGAAGTGTTTCTGTACAATTCCACAGTTTGTAGATTATGTGGCGAAGAAAATGATAATGGGACGTTTTTATATTCAACCGACGAAAATAATCAAAACATCAGTGAATTAGTAAATGCGTTTCTTCCTATCAGGGTGTTTGATGATGGGCAGCTCCCCAGGACCATTTGCCCTGGCTGTACCATACAACTGGAAGCCACCGTGGAGTTCATCACCTTGATTGTCAACGGGCAGAAAGTAATTAGAGCCCTGCATCAAAGGGAAATAGAATACAAGAAGACAGTTCTGAGCACTGATGATAATGAACCTGACATCTTATCTGAAAACATTGTGCAGGAgaTCAACGTTGAAAATGGCGCCTATCCACCGGAACACCAGATATCCTTACAAGTTGCGGGGCTGGAGAAGCCTAAACGGAAGAGGGGCCGGCCGCCGAAGAAATCTAAAACTCCCGAAGAGTTAGCCATGGAAGCAGCCCTCAAGGAGAGTCAGGAGAAAGCTGCTAGTGAGGAGAAACATGATGAGGAACCCACTGGGAAGAGGAAAAGAAAAGCTCCTACTAGGTTCCAAGAAGTTGTACAGGGCAAAGAATTAGAAAAGATCTTCATTGAGGAGGGAGTGACGGACGGAGAAGAGAGTGAGCAGGATATAAAGCCTGACATTAAATCACTGCCACCAGATACTCCTAAAGTGCCAGAAATCATTGGCCACACAGATTCCGGTGAATTAGTTGTTGTTGTCAAGGGGAAAGGAAGGGGAAGACCAAAAGGTCGCCTTCACCAAAAGAAGCACAAATGCGCCATATGCGACAAAGAGTTCCTGTGCTCGGGGAGATACATGTCTCATATAGCTCAACACGGGCCAGTTGTGTACCAGTGCCAACACTGCGGGCAGACCTTCCCCACGCGTCTCGACTTCACCAAGCATCAGGACAAGAGTGGCCACCAGGGGAAGAAGGTCATACCCTGCAAGGAGGATGATGCGGCAATCGAGGATCCACTGAAGCAAGAAGTGGCAATCACAGACAAGAAAAATGAAGGCCCAGCTAAATCACTGCCAGATTTGGACCCACAGACTGAAGAGGTTGCACAAACTGTAGAGTTGAAGATTGGGATGATCACTGACAATAATGCTGATGAAAATAAAGATGTTGAAGAAAAGTGTGAAGAATCAGAAGATAACACAGCTCCGGGGAAAAAGAAGCTCAAATGTCCGCACTGTGAGAAAATGTTCAGCTCCAAGCAGAGCCGGTCTGTTCATGTGAAGGCGATCCACCGCGGCGAGCGTGCGTTCGCGTGCGGCACGTGCGGCGCAACGTTCGCGTACCCGCGCGCGCTGCACCTGCACGCACTCAAACACAGGGGCAAGCTGGCCAAGGGGTACGCATGCGACCTCTGCGGGAAGGTGCTGAACCACCCGTCGTCAGTGACATACCACAAAGAAGCAGAGCACGCGGGACATAAGTTTGTATGCAACAAGTGCGGCAAGAGCTTCAAGCACAAGCAACTCCTGCAGCGGCACCAGCTCGTGCACACGCAACACCGCCCCTTCCATTGCAAGCTGTGCAACGCAGCATTCAAAACGAAAGCAAATCTCTTCAACCATCAGCTGCTTCACTCCGGAATAAAGAAACACGCCTGCGACATCTGCAAACAACGGTTCGCGCACAAAACTAGTCTCACTTTACATATGAGGTGGCACAATGGTCAAAAACCCTACGTGTGCAAGGAGTGTGGCAAAGCGTTCAGTCAGAAGGGCAACCTGTCGGAGCACGCGCGCATCCACACCGGGGAGAAACCATTCCACTGCGCACACTGTCCTCGCAGGTTCACCACCTCCTCGCAACACCGGCTGCATCTCAGGAGGCACTTGCAGGAGAGAGACAAGTTTGTATCAGTTGTTACCTTCCACTGCGCACACTGTCCACGCAGGTTCACCACCTCCTCGCAACACCGGCTGCATCTCAGGAGGCACTTGCAGGAGAGGGACAAGTTTGTATCAGTTGTTACCTTCCACTGCGCACACTGTCCACGCAGGTTCACCACCTCCTCGCAACACCGGCTGCATCTCAGGAGGCACTTGCAGGAGAGAGACAAGGAGTCGGTGCGGGTGCGTGCGGCGCCGGCGCGGACGGGCGGCACGAGTGTGGCGGTCCCGGCGGTGACGGCGGCGGCTGGTGCTGGCGTGGCTGCTGCGGGCGCACACAAGTGCTCGTACTGCGCCCGCGTGTGTCCCTCGCGCTGGGCGCTGCAGAAGCACACGCGCCGTCACACCGGCGAGCGTCCCTTCCAGTGCCCGCTGTGTCCGCGCGCCTTCGCCGACTGCTCCAACCTCAACAAGCACAAGAAGGTGCGCGTCCACCCCGCGCCGCCCGCGACCTCTCTCCGCGAGTTCGTCGAGCGCGTCCCGCGGATCCTCCTCGAGCGGTGCGACGCGAACCGTTTCCGAAGCGAAAAAGTCCCGCGCGCCCCGGAACGCGAACGCGATCGGAGCCCGACGACGCGTCCCGCGCGGCCCGAGCGCGCGCACACCGACGGACGTCCGGAATCTGACAGACGACCGCGGACGGAGACTGACGGGCGGCTACATAAACAGACAGATTTAGACAAACCGAGTGAAACTCGGACCGAATCCGACGGGCGGACGCAGAGACGGACCGAGTTAAAGTGCACGCTGTGCCCGGGCTCGTTCCCCGGCGACGCGGAGCTGATGGAGCACACGCGCGTGTGTTACGACCGCGAGCAGTTCCCGTGCTGGCTGTGCCCGCGCACGTTCGGTGCCCCCGCCGCGCTCGCCGGCCACTACCGGTGCTCCCACGCCGCGGCCCCGCGCCGCGGGCTCGTGTTCCCGTGCCCCGAGTGCGCCCGCCAGTGCCCCACGCAGTACACGCTCGACCAACATTTGAGGACGCACGTGAAGCGACAGAAGCGGGTGTACGAGTGCGACCACTGCGGCCACCGCATGATGAACCGAAGCAACTTCGTGCTGCACCTGCGGAGGCACGCTCGGGGCAGGGGGCCGCGGACGCACCCGCGGAGGAGGGAGCCGCGGACGCACGGGTAA
- Protein Sequence
- MEVFLYNSTVCRLCGEENDNGTFLYSTDENNQNISELVNAFLPIRVFDDGQLPRTICPGCTIQLEATVEFITLIVNGQKVIRALHQREIEYKKTVLSTDDNEPDILSENIVQEINVENGAYPPEHQISLQVAGLEKPKRKRGRPPKKSKTPEELAMEAALKESQEKAASEEKHDEEPTGKRKRKAPTRFQEVVQGKELEKIFIEEGVTDGEESEQDIKPDIKSLPPDTPKVPEIIGHTDSGELVVVVKGKGRGRPKGRLHQKKHKCAICDKEFLCSGRYMSHIAQHGPVVYQCQHCGQTFPTRLDFTKHQDKSGHQGKKVIPCKEDDAAIEDPLKQEVAITDKKNEGPAKSLPDLDPQTEEVAQTVELKIGMITDNNADENKDVEEKCEESEDNTAPGKKKLKCPHCEKMFSSKQSRSVHVKAIHRGERAFACGTCGATFAYPRALHLHALKHRGKLAKGYACDLCGKVLNHPSSVTYHKEAEHAGHKFVCNKCGKSFKHKQLLQRHQLVHTQHRPFHCKLCNAAFKTKANLFNHQLLHSGIKKHACDICKQRFAHKTSLTLHMRWHNGQKPYVCKECGKAFSQKGNLSEHARIHTGEKPFHCAHCPRRFTTSSQHRLHLRRHLQERDKFVSVVTFHCAHCPRRFTTSSQHRLHLRRHLQERDKFVSVVTFHCAHCPRRFTTSSQHRLHLRRHLQERDKESVRVRAAPARTGGTSVAVPAVTAAAGAGVAAAGAHKCSYCARVCPSRWALQKHTRRHTGERPFQCPLCPRAFADCSNLNKHKKVRVHPAPPATSLREFVERVPRILLERCDANRFRSEKVPRAPERERDRSPTTRPARPERAHTDGRPESDRRPRTETDGRLHKQTDLDKPSETRTESDGRTQRRTELKCTLCPGSFPGDAELMEHTRVCYDREQFPCWLCPRTFGAPAALAGHYRCSHAAAPRRGLVFPCPECARQCPTQYTLDQHLRTHVKRQKRVYECDHCGHRMMNRSNFVLHLRRHARGRGPRTHPRRREPRTHG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -