Haes015096.2
Basic Information
- Insect
- Hemithea aestivaria
- Gene Symbol
- -
- Assembly
- GCA_947507615.1
- Location
- OX382350.1:3838889-3844437[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 0.019 1.5 10.0 2.9 1 23 51 73 51 73 0.98 2 25 1.9 1.5e+02 3.7 2.3 2 23 144 166 143 166 0.95 3 25 3.5e-06 0.00027 21.8 1.1 1 23 171 194 171 194 0.97 4 25 0.0059 0.46 11.7 2.8 1 23 197 220 197 220 0.96 5 25 0.014 1.1 10.5 1.1 3 23 228 249 226 249 0.94 6 25 8e-05 0.0062 17.5 0.5 2 23 257 279 256 279 0.96 7 25 0.21 16 6.8 0.5 1 23 284 306 284 306 0.97 8 25 5.6e-07 4.3e-05 24.3 0.6 1 23 312 334 312 334 0.98 9 25 0.025 2 9.7 0.6 1 23 420 442 420 442 0.98 10 25 3.1 2.4e+02 3.1 0.0 2 22 468 488 467 490 0.88 11 25 0.00018 0.014 16.4 0.7 3 23 543 564 542 564 0.98 12 25 0.00054 0.042 14.9 1.2 3 23 571 592 570 592 0.97 13 25 0.13 10 7.4 3.3 1 23 598 621 598 621 0.97 14 25 0.0018 0.14 13.3 1.9 2 23 628 650 627 650 0.95 15 25 0.04 3.1 9.1 1.2 1 23 656 678 656 678 0.95 16 25 0.01 0.79 10.9 1.3 1 23 684 707 684 707 0.90 17 25 0.00056 0.044 14.9 0.8 1 23 756 779 756 779 0.93 18 25 0.23 18 6.6 0.9 2 23 805 827 804 827 0.95 19 25 0.31 25 6.2 2.1 3 23 851 872 849 872 0.91 20 25 0.0028 0.22 12.7 0.1 1 23 878 901 878 901 0.97 21 25 0.0093 0.73 11.0 0.1 2 23 928 950 927 950 0.96 22 25 0.0007 0.055 14.6 0.9 1 23 957 980 957 980 0.97 23 25 0.011 0.88 10.8 1.0 1 23 986 1008 986 1008 0.95 24 25 3.2e-05 0.0025 18.8 2.9 1 23 1014 1036 1014 1036 0.98 25 25 0.00024 0.019 16.0 2.3 2 23 1043 1064 1042 1065 0.94
Sequence Information
- Coding Sequence
- ATGGCAAATGGGAATTCGATTCCCGATTGCCACCTGGACCTGCCAAGACAAAATCAAAGCCACCTGGACCGCCTCAAAATTATGCGAAAGAACATATCAACTCTGCTACGCCTAGGAAACTTGGTCCCTTTCAATTGGACCACAAAAGGTTTTCGGTGTTTCTACTGCGAAAAACCGATAAAAAACTGTGCTTTGTTAAAAGAACACACTTTGAAACACAAAATAGACATTGATCGCTTCGTCAACCAGCGTATAATTTCCAAAGATATCCCAGTCAAAGTTGACATTTCAGATATTGGTTGCAAAGAATGTCCTAATACTACCATAGGAACTTTAGCTGATTTGGTCACTCATGTCAAGGAATACCACGAATACGAGAAAACTGCTGACGTTTGCTTCTTCCCTTTCATTTTGAACGAAGAGCTCATGAAATGTATGCTTTGTGACCACACTTATGATAATTTCACCAGAATGATCAGCCATATGTACAAAGATCACATAACTCATACTTTCATTTGTCAGATTTGTGGGTTTAGCTTTAGAGATCAGATTCGGTTGAAGCGGCATATGCAAACGAGTCATATCGGATATAGGTGCACAACTTGTGATAAAATCTTCGATGCATTACACAAATTAGAGAAGCATAAAGCTAGATTTCATGGAAAAGTCAAAGTTTCTCATTGTTATTTATGCAGTGAGACTTTCGAAAATAGCTACCAAGTAAAAGTCCACATGGGGAAGGTCCATAATGTGGAGAAGTATAAGATTAAATGCGAGCATTGTCCTAAAATTTTCTCCACGAAAGGGTCGATGTTGGTGCACGTAAAAGTACTGCATTCAGACGTGAAATATAAATGCGATATGTGTGATTACACAGCAGCTATCAAATGGATGATTAAACTGCATAAGAGGAAGCATTTTGGGGAGAAAACATACGTTTGTAGTTTATGTGAAAGGAAGTTTGGCAGGTCGAGTAATTTAAGGGCTCATATGAAAGTTCATACAGGGAACACGGGAAGAGTTTGCCGGTTTTGTCGAGAACCTAGAGGTGGTCAGAAAGAGACAAACACTATGAAAACCTCCAAGCCAGAAAGAGAAGCAAGCTGCGACGTGGACCTAACCCCACCAGTCAGCATCCTCCCGAAAAAAGGCCCAAAAAAGATCAGCCCCAAAGAAAAAAGGAATATAATGATACAAAATGTTACCAAAGTGCTATTAAAAACTACAGTTATGCCTTTTCGATGGCTGAAAAGTTCGTACAGATGTTTTTATTGCTACGATATCTTTCAAGAACCGTCAGAATTGAAGGAACATCAGCTAATGCACACCAGTGACGATGTAAAAGTGAAAGCAATGAAGAATTATTGGGAGACTGTTGTCTACGTTGACATATCAGATATGTCTTGTAAACTATGCCCTGAAGAGATCACAGATCTGTACGATATGATAGACCATCTTGTCGCTAAACATGATGTAATTTATAATAAAGATGTGGGAATCTGTATGGTTGCTTTCAAATTGGATAACTTCAACGTTAGTTGCTTAGCGTGCGGTGCGAACTTTTTGACTTTTGGTCCCTTACTTTATCATACGAACAAAAATCACAAAGGCACGTCAGTGATTCTTTGCGATGTGTGCGGGCAGCACTTTAAAGACAACATTCTTTTACGAATGCATGTCAGAACTGTACACGAAAATACGGGGTTGCTTTGTCCTGATTGTGGAGATAAATTTGATACGAGATCTAAGTTAAAAACGCATCAGAAAAACCAGCATGATATCGCAAATAAGTATAAATGTTTGGTCTGCACGTTGACGTTTCAGAGTCATTACAAAAGATCTCGGCACATGGCTTCCGAACATAAGAATAGAAAGGAAATCAAATGCTTGCATTGCCCGAAGACTTTCGTCTTTAGGAGTATGATGATGACTCACGTTAGAGACACGCATTTGAAAGTTAGGAATCATATTTGTGGGGTCTGCGGTTGGAGGGCGTTTAACAGTAATAGACTGAAAAATCATATGTATAAACACAGTGGGGAGAAGAATTTTAAATGTGATTCTTGCGATAAAGCGTTTACTACGAAAAAGATAATGAAAGCGCATTTTGCGAGGATGCATAAGCCGCAGACGCAAGCAATATCTCATGATGACGAGATGGTCAAGAGTTTGCCTGGACGTCATCGGAAAGAAGAATTAGTGCGATTGCTGACCGTGATTTTGGAGAACACGTCTGTAATGCCTTTCAGATGGTATTCCAACCGATATATGTGTTTCTACTGCGGCTGTCCTTTCACAGACAGCGCACTCCTTAAAGAACACAATCTGATTGAACACGCGGACATGAAGATCCGTTCCTCCTTCAGAAGTCTCCTAAAGAACAGCCGAGTCAAGCTAGAAGCGTCCGAAATCAAATGCAAACTCTGCTCCCAAGAATTCCCGAAACTAAACCCCCTCGTCGACCATTTAAGGGATTGTCACGAGCTGAAAACCAACGTCCAAGTTCGATCAGAGTTGTCCGTTTTTAAATTGGACGAGAAGAGGATGTTTTGTGAGGAGTGTGGGGAGGAATTTCAGTTCTTTGCGACGTTACTGAAGCATCATCACGCGTACCATAATAAAAGCGAGTTGTACGTATGTGAGATATGCGGAATGGGATTTGTCGCGAAATGTAACGTCGCGTCGCACGTTAGGAGTGTACATCAACGAAGACCTCCTTCCTGTGCTATTTGCAAAACCAACGGCACGACCTGCCTTCACAAATACAGTGCAACTACCCTCAAATGTCCTCAATGCCCTGAAATCCTATCAAGCCCTTACATGAAGAAACGTCACTTAATAACAGTTCATAAAGACAAAGTCTACCAATTTTCTTGTGACCAGTGCCCGCGTCAATTTCCGACCAGGAGTAGGCTGGTCGCTCATAAGCAAAGGACGCATCTCAAGCAGAGGACTTTTGCTTGTGAATTATGTGGTTATAGAGCGTTTAATCGGCACAGTTTGACTCTTCACATGGTGTCACATGATGACGCGAGGCCGTTTGAGTGCGAATTCTGTAAGAAAACCTTTCAAAGAAAGAAGACGCTGGAGATTCATAGGAGGATTCACACGAACGATAAACGGTGTGTTTGTAAAGCGTGTGGGAAGGCGTTCGTGCAAACTGCCAGTCTGAAGCTTCATTATAGAGTGCATCATTCTAAGGAGCATAACCAAGAACATGATATAGCTAGTTATCTCTCGAGAGTTGACAATAAGTAA
- Protein Sequence
- MANGNSIPDCHLDLPRQNQSHLDRLKIMRKNISTLLRLGNLVPFNWTTKGFRCFYCEKPIKNCALLKEHTLKHKIDIDRFVNQRIISKDIPVKVDISDIGCKECPNTTIGTLADLVTHVKEYHEYEKTADVCFFPFILNEELMKCMLCDHTYDNFTRMISHMYKDHITHTFICQICGFSFRDQIRLKRHMQTSHIGYRCTTCDKIFDALHKLEKHKARFHGKVKVSHCYLCSETFENSYQVKVHMGKVHNVEKYKIKCEHCPKIFSTKGSMLVHVKVLHSDVKYKCDMCDYTAAIKWMIKLHKRKHFGEKTYVCSLCERKFGRSSNLRAHMKVHTGNTGRVCRFCREPRGGQKETNTMKTSKPEREASCDVDLTPPVSILPKKGPKKISPKEKRNIMIQNVTKVLLKTTVMPFRWLKSSYRCFYCYDIFQEPSELKEHQLMHTSDDVKVKAMKNYWETVVYVDISDMSCKLCPEEITDLYDMIDHLVAKHDVIYNKDVGICMVAFKLDNFNVSCLACGANFLTFGPLLYHTNKNHKGTSVILCDVCGQHFKDNILLRMHVRTVHENTGLLCPDCGDKFDTRSKLKTHQKNQHDIANKYKCLVCTLTFQSHYKRSRHMASEHKNRKEIKCLHCPKTFVFRSMMMTHVRDTHLKVRNHICGVCGWRAFNSNRLKNHMYKHSGEKNFKCDSCDKAFTTKKIMKAHFARMHKPQTQAISHDDEMVKSLPGRHRKEELVRLLTVILENTSVMPFRWYSNRYMCFYCGCPFTDSALLKEHNLIEHADMKIRSSFRSLLKNSRVKLEASEIKCKLCSQEFPKLNPLVDHLRDCHELKTNVQVRSELSVFKLDEKRMFCEECGEEFQFFATLLKHHHAYHNKSELYVCEICGMGFVAKCNVASHVRSVHQRRPPSCAICKTNGTTCLHKYSATTLKCPQCPEILSSPYMKKRHLITVHKDKVYQFSCDQCPRQFPTRSRLVAHKQRTHLKQRTFACELCGYRAFNRHSLTLHMVSHDDARPFECEFCKKTFQRKKTLEIHRRIHTNDKRCVCKACGKAFVQTASLKLHYRVHHSKEHNQEHDIASYLSRVDNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -