Haes015078.1
Basic Information
- Insect
- Hemithea aestivaria
- Gene Symbol
- -
- Assembly
- GCA_947507615.1
- Location
- OX382350.1:3586590-3596857[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 36 0.066 5.2 8.4 1.5 1 23 261 284 261 284 0.93 2 36 1.6 1.3e+02 4.0 0.1 2 23 311 333 310 333 0.94 3 36 0.0061 0.47 11.6 0.2 1 23 381 403 381 403 0.98 4 36 0.002 0.15 13.2 1.5 1 23 408 431 408 431 0.98 5 36 0.0073 0.57 11.4 1.6 1 23 436 459 436 459 0.96 6 36 0.067 5.3 8.3 0.3 2 23 467 489 466 489 0.94 7 36 1e-05 0.00078 20.4 0.6 1 23 495 517 495 517 0.96 8 36 2e-06 0.00015 22.6 1.6 1 23 523 545 523 545 0.99 9 36 0.021 1.6 9.9 2.7 2 21 552 571 551 573 0.93 10 36 7.8 6.1e+02 1.8 1.1 1 23 653 676 653 676 0.91 11 36 0.026 2.1 9.6 0.2 2 23 702 724 701 724 0.94 12 36 0.017 1.4 10.2 1.1 1 23 746 768 746 768 0.98 13 36 0.21 16 6.8 0.0 1 23 772 794 772 794 0.96 14 36 0.005 0.39 11.9 4.0 1 23 799 821 799 821 0.98 15 36 0.81 63 4.9 1.0 2 23 829 851 828 851 0.96 16 36 4.2e-05 0.0033 18.4 1.4 1 23 857 880 857 880 0.98 17 36 6.9e-05 0.0054 17.7 0.8 1 23 886 908 886 908 0.98 18 36 0.0035 0.27 12.4 4.2 1 23 914 936 914 936 0.95 19 36 0.74 58 5.1 2.5 1 23 1028 1051 1028 1051 0.91 20 36 0.29 22 6.3 0.2 2 23 1077 1099 1076 1099 0.94 21 36 0.36 28 6.0 0.6 2 23 1122 1143 1121 1143 0.96 22 36 0.061 4.7 8.5 0.0 1 23 1147 1169 1147 1169 0.93 23 36 0.0015 0.12 13.5 2.2 1 23 1174 1196 1174 1196 0.97 24 36 0.05 3.9 8.7 1.1 1 23 1201 1224 1201 1224 0.96 25 36 1.2e-05 0.00093 20.1 0.6 1 23 1230 1253 1230 1253 0.98 26 36 0.064 4.9 8.4 2.1 1 23 1259 1281 1259 1281 0.96 27 36 0.003 0.24 12.6 4.3 1 23 1287 1309 1287 1309 0.96 28 36 0.16 13 7.1 1.8 1 23 1403 1426 1403 1426 0.94 29 36 0.0084 0.65 11.2 0.0 2 23 1453 1475 1452 1475 0.94 30 36 1.4 1.1e+02 4.2 1.7 2 23 1498 1519 1497 1519 0.91 31 36 0.029 2.3 9.5 0.0 1 23 1523 1545 1523 1545 0.96 32 36 0.00094 0.073 14.2 1.9 1 23 1550 1572 1550 1572 0.98 33 36 0.046 3.5 8.9 1.3 5 23 1582 1601 1579 1601 0.95 34 36 3.8e-06 0.00029 21.7 0.6 3 23 1609 1630 1607 1630 0.96 35 36 0.025 2 9.7 1.5 1 23 1636 1658 1636 1658 0.97 36 36 0.032 2.5 9.3 6.7 1 23 1664 1686 1664 1686 0.96
Sequence Information
- Coding Sequence
- ATGTCATCATCGATGCTCAGTTGCCAGCCTGTGCGTCTTTTACAAGCTCCATCATGGAGAGTGCTCCTCAGAACCCCACGGGTTAGTTCCACCATCACCCTTTTACTACCGAACGTCCATAAAAACGGCACTGCGCCACCAATATCTGGTTTCGTAAGTAACATCGCTGTTAAGAACGAAGTGGAACTGGATACGGAATGGGATCTCGTTATCAAGGACCTCAAAACTAACGCTAAAGTAGCGAAGAAAAAAACAGGCAAAGATAAACCTAATACATTTAGTACAGAAACAAAACTCAAGATGACCCATAACCGTAAAGGTCAAATAGAAGAAATAAATCTGGAAATGCCCGATATCGTAGAAGATTATGTGTCTAAAGCAAAACCTAAAGCGAAAAATCCTAGAAAAAGTATAAAATCGGGGGAAGATGTAGAGGATTTAAACCTTGAAATGCCCGATGCTGTTGAAGATTACGTTTCAAAAGCAAAACCGAAACCCAAAAACCCAAGGCCTAGAAGGCCTAGTATAAAACTGTCAGAAGATATAGAAGATAACATTAATATATCGGAGATAATAGCTGCAAGAAAAACTAATCAAGCCGCACGAGAAAGTAAACCCAAGGTGAAAAAACAGAAAGTCGAATTGAAATTCGAAATAAAAACCCCTGAAGATCCCGAAACGAAGTCTCTATTTCGTTTAGACAAGCATAGGCATAACGTACGAGAGATAATACTCAATTCCAACGCAACTCCTATCAGAGCACACTACGTTGGGAATGGATACGCTTGCTGTTTCTGTGGCAGCTATTTCACTAAAGCTGCAGATCTCAAAACGCACACGATCAACGATCACGACAAAAGGGAAAAGAGGAAATTCATGTCCGAATGTTTCCTCAACTCTTTCATAGTAAAACTGGACATAACCAACTTGAAATGTAGTTTTTGCAGCATGGAATTGTCCGCATTAGATGATTTAATATCGCATCTGAACGAAGTACACGATAAATCGATTTATACAGACATTAAAAGTCAAATAGTCTGCTTCAAACTTGACAACGAAGAGCTGAAGTGCATGTTCTGTCAATTAGAATGCAACAGTTTTAGGAGACTGTTGGAGCACATGAATCAACATTACAGGAACTTTGTTTGTAAGGTCTGTGACTCAGGTTATGTTAATCAGAGAATGCTGACGATACATGCAAACTCGCACAAAGTAGGGACTTTTGAATGCAAGGCTTGCAACAAAGTTTACAATAAGCTGAGTTCGTTCAGATATCATGAGAGAACGGCGCACGCAACACTCAGATACAAATGTTTCCAATGCGGCGAAAAGTTCAGCAAAGTGACTGCGAAGAAAACTCACATGAAAGAAGTCCACGGTGCTGAGTTCGCTCAAGTGGAATGCCAGGCTTGCGAAAGGATATTCCCAGATAGGAACGCTTTGAGGATCCACACTCATAGAGATCATTTGTTAGAGCGTCGGTACCAATGCGACGTTTGCGACAAAAGCTTTTTCTCGTCGTCGATGTTGAAAAACCACGCCGTTATGCACACGTCCGCTAGAGATTTCAAGTGTGAAGCTTGTGGAAAAGACTTTGCTAGGAAGAAGACTTTGCAGACCCATATGAAGACCCATAGAGACGACACTAGGATCGTGTGTCGCATATGCCAGAAGTACTTCTTTAAGGAGTCCCATTTGATCGCGCATATGTTGTGCCACGATGATGGGATACGTTGTATCGTACGTACGCGTGACCGACAAGTACAGGGAGAAGTGGAAGTGGCAAGGGTCTTAAGAACCACCCGTCTTAACAAAAATGTTAAAACTAATCCTGATCCAAAGAAAGTAGATTTACAATTACAATGGCCTACGATATACAAACATCGATTCAACACCCGTACGATACTGCAGTGTTCTAACGCAACACCTCTAGGAATAAATTACGCGGGAACAGGATTTTCCTGCGTATTCTGCAAGGACTTCTACCCCAAAGCCAAAGATCTCAAAAGCCACACGATCGACAAACACGAAAAAGAAATAGCAAAATTCATAAAAAATATAGCCTTGTCCAAATTCATCATCAAAATGGACATCACGGGTTTGAGCTGCAATATTTGCAAAATGGAATTCAATTTACTCGATGAGTTGATTGACCATTTGAATCAAAAGCACAATAAGGGGTTGTACACGGATATCAACAGTCAGATAGTATGCTTCAAATTTGACGGTGATGCGTTCAAATGCATGTTCTGTCAAATAGAATTCTCCACTTTCAAACCTTTGCTTGTCCACATGAATCAGCATTACAAGAACTATATCTGCGAGATTTGTGCTGCTGGTTTCGTTAATCGAGCAACGCTAGTGGGTCACAAAACCAGGCACAACGTTGGGGAGTTTAAATGTAGTTTCTGCGGCAAGATCTGCGAAACGCAGAACCGATTGAAACAACACGAAAGGTTGCACTCCAAGACTGGCTTACAAATGAAATGCTATCAGTGCGACGAGAAATTCTTGTCGATCAAAGCGAAGAAAGAACACATGAGGACCGTTCACGAATATAAATATCAGTACAAATGTACAGCTTGCGAGAGACAGTTCACTAATAAGTCTTCGCTTTGGGCTCATAAGAGGAGAGATCATCTGCTTGAGCGTAAATTTGAATGTGACGAGTGTGATATGAGGTTCTTTTCGAAATCAGAGGTAGAAGATCATAGGAGGACGCATAAAGATGTGAAGGAGTTTTTGTGTGAGGTGTGTTGTAAAGCGTTCAAGATGAAGAAGACTCTGAATCAGCATATGCGGACGCACAGGAACGAGAGGCCGAGTTTCGTATGTACCATCGGTGACCGAAAAATAAAGAAAGAAGTGGATAGTAAAACATTGACAAAGCTGCCTAAAGCGCTAAGAAAGCAAGGCGAAACGAAATCTAGCAAAAACAAACCAATAAAAGAGATATTAAAAAAGAAGATCAAAGATATAGGAAAACAGATGACAGAGCTGCACAAGCATCGATACAACATTCGTATATtacttcagtattctaacgctacacctataagagcccactacgccgggactggctttgcgtgcggtttctgcagagaattcttccacaaagcaaaagatctcaaatctcacacaatagacaaacacgataaagacaaagtcaagttcatgcaaacgaaatccctctccaaattcacagttaaactggatataaccggtttgaactgcaccatttgcaaatcagaattcaaaatggtggaagacctgatcgatcatttgaatcagactcacgataagggtttgttcacggatataaagaaccagatagtgtgttttaagcttgatggtgacgcgttgaaatgcatgttttgtcaaattgagtatactacgttcaaacctttactggaacatatgaatcaacattacaggaatttcatttgcgagatttgcgcagctggcttcgtaagtcaaggcatgctagctaggcatgcgaccgcgcacacgatcggcgaattcaaatgccgtacatgcgacaaagtgtttgaaacgcaaaacaaagtgaggcaacacgaaaagttgcacaccggtttccagtacaaatgtttccaatgcggggagaaatttggatcggttaaattgaagaaagaccacatgacgtctgtgcacggagctaaatacgaatataaatgccctgcgtgcgataaacaattcacaaataaggttactctttgggcgcataaaagacgggatcacttattggagaggagattcgaatgtgaacattgcgatatgagattcttttccaaagctgagagagataatcacacagtgactcatactgatgtgagagagtttttgtgtgagatatgttgtaaagcgtttagattgaagaagactttaaggcagcatatgcgtacgcattcgaacgatagGCCAAGTTTCCTTATTACCATCGGTGACCGCAAAATAAAGAAGGAAGAGGACGATAAGCCATGGACGGGCTCGTCAAAGGCGCCTCAAAAGACTAAACAAAAATCCAAAACTAAACCTGAACCCATGAGAGAGATAAAACTTGTGAGAAAGAAAGTGATATTTCTTGGGAGGGAGAGACCCTTGCTTTACAAACACCGGTACAACATTcgtacgattctgcaatattctaatgccacgccgatttcggcacattacgctggaacaggcttttcatgcggtttctgccgagagttctttcacaaagcaggagatctcaagtctcatacaattaacgagcacgatagagatagagttagattcgttcagatcatgaaaccgctcccagatttgactgtcaaactggacattactgacttacaatgcagcatctgcaaaaaggaattcgacatggttgatgaactgatcgatcatttgaacgaggctcacgataagggcttattcacggatataaaaaaccagatagtctgcttcaagttcaatggggacgtgttgaagtgtatattttgccagacagagtttatctcctttagagcgttacatattcacatgaaccagcattacaggaactttatatgcgaagtttgcgcggcagggtttgtcaaccaatcaatgctggataaacacgctaaagggcatattattggcgagttcaaatgccgatcgtgcaacaaagttttcgaaacgaaaagcaaaatgctgtggcacgaaaggttgcacactcccagtgctaaattcggttgtattcattgcggggaaaaattcgctacagctaaaatgaggaaggatcatatgaagactttgcacggcgctaaattcgacataaactgtccagattgcgacagacagttcagtaataagtcttcgttttgggcgcacaggagacgagaccatttgttggagcgcaaatttgagtgcgaacattgtgatatgagattcttttcgagagctgagaaagacgatcacatggtgactcacacggatgttagagagtttttgtgtgagatctgttgtaaggcgtttaagttgaagaaacatatgcgtcagcatatgcgcacgcacgccaatgacagGCCTAGCCGAGCCATCACTGTAGACGCGGGTCCGATGCCTGACCAAGCTATTGAACTCCGACCCTCCTTTTAA
- Protein Sequence
- MSSSMLSCQPVRLLQAPSWRVLLRTPRVSSTITLLLPNVHKNGTAPPISGFVSNIAVKNEVELDTEWDLVIKDLKTNAKVAKKKTGKDKPNTFSTETKLKMTHNRKGQIEEINLEMPDIVEDYVSKAKPKAKNPRKSIKSGEDVEDLNLEMPDAVEDYVSKAKPKPKNPRPRRPSIKLSEDIEDNINISEIIAARKTNQAARESKPKVKKQKVELKFEIKTPEDPETKSLFRLDKHRHNVREIILNSNATPIRAHYVGNGYACCFCGSYFTKAADLKTHTINDHDKREKRKFMSECFLNSFIVKLDITNLKCSFCSMELSALDDLISHLNEVHDKSIYTDIKSQIVCFKLDNEELKCMFCQLECNSFRRLLEHMNQHYRNFVCKVCDSGYVNQRMLTIHANSHKVGTFECKACNKVYNKLSSFRYHERTAHATLRYKCFQCGEKFSKVTAKKTHMKEVHGAEFAQVECQACERIFPDRNALRIHTHRDHLLERRYQCDVCDKSFFSSSMLKNHAVMHTSARDFKCEACGKDFARKKTLQTHMKTHRDDTRIVCRICQKYFFKESHLIAHMLCHDDGIRCIVRTRDRQVQGEVEVARVLRTTRLNKNVKTNPDPKKVDLQLQWPTIYKHRFNTRTILQCSNATPLGINYAGTGFSCVFCKDFYPKAKDLKSHTIDKHEKEIAKFIKNIALSKFIIKMDITGLSCNICKMEFNLLDELIDHLNQKHNKGLYTDINSQIVCFKFDGDAFKCMFCQIEFSTFKPLLVHMNQHYKNYICEICAAGFVNRATLVGHKTRHNVGEFKCSFCGKICETQNRLKQHERLHSKTGLQMKCYQCDEKFLSIKAKKEHMRTVHEYKYQYKCTACERQFTNKSSLWAHKRRDHLLERKFECDECDMRFFSKSEVEDHRRTHKDVKEFLCEVCCKAFKMKKTLNQHMRTHRNERPSFVCTIGDRKIKKEVDSKTLTKLPKALRKQGETKSSKNKPIKEILKKKIKDIGKQMTELHKHRYNIRILLQYSNATPIRAHYAGTGFACGFCREFFHKAKDLKSHTIDKHDKDKVKFMQTKSLSKFTVKLDITGLNCTICKSEFKMVEDLIDHLNQTHDKGLFTDIKNQIVCFKLDGDALKCMFCQIEYTTFKPLLEHMNQHYRNFICEICAAGFVSQGMLARHATAHTIGEFKCRTCDKVFETQNKVRQHEKLHTGFQYKCFQCGEKFGSVKLKKDHMTSVHGAKYEYKCPACDKQFTNKVTLWAHKRRDHLLERRFECEHCDMRFFSKAERDNHTVTHTDVREFLCEICCKAFRLKKTLRQHMRTHSNDRPSFLITIGDRKIKKEEDDKPWTGSSKAPQKTKQKSKTKPEPMREIKLVRKKVIFLGRERPLLYKHRYNIRTILQYSNATPISAHYAGTGFSCGFCREFFHKAGDLKSHTINEHDRDRVRFVQIMKPLPDLTVKLDITDLQCSICKKEFDMVDELIDHLNEAHDKGLFTDIKNQIVCFKFNGDVLKCIFCQTEFISFRALHIHMNQHYRNFICEVCAAGFVNQSMLDKHAKGHIIGEFKCRSCNKVFETKSKMLWHERLHTPSAKFGCIHCGEKFATAKMRKDHMKTLHGAKFDINCPDCDRQFSNKSSFWAHRRRDHLLERKFECEHCDMRFFSRAEKDDHMVTHTDVREFLCEICCKAFKLKKHMRQHMRTHANDRPSRAITVDAGPMPDQAIELRPSF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -