Hchr024853.1
Basic Information
- Insect
- Hemistola chrysoprasaria
- Gene Symbol
- -
- Assembly
- GCA_947063395.1
- Location
- OX346735.1:832015-838882[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.82 66 4.9 1.3 1 23 220 242 220 242 0.97 2 12 0.0008 0.064 14.4 2.8 1 23 248 271 248 271 0.95 3 12 0.6 48 5.4 1.5 1 17 282 298 282 304 0.56 4 12 0.0062 0.5 11.6 6.9 1 23 531 553 531 553 0.98 5 12 2.2 1.7e+02 3.6 4.0 2 23 559 581 558 581 0.95 6 12 0.29 24 6.3 6.8 3 23 591 611 590 612 0.94 7 12 0.0039 0.32 12.2 2.5 3 23 616 636 615 636 0.97 8 12 0.22 18 6.7 2.5 3 23 651 672 649 672 0.95 9 12 0.0011 0.086 14.0 2.8 1 23 678 700 678 700 0.97 10 12 0.0023 0.19 13.0 1.2 2 23 707 728 707 728 0.98 11 12 0.025 2 9.7 6.9 1 23 734 757 734 757 0.96 12 12 0.0012 0.093 13.9 1.9 1 23 761 784 761 784 0.92
Sequence Information
- Coding Sequence
- ATGGACGAAGATTTTCCAACTTTAATAAGACCTCAAAACCCCCTAAGAATTGTGAAAACATATTCCAAGATGGACAAAATGGGTTCCAAGAGTAACATTGAACAAAATCCTACACCTCAGCATAAAGATATCCCTAAACCAGATCTCTCTGGACATACGAAACCAGTATCATTGACAACTCTTAAAGCAGTGACTTTCTTACTAAATGGAACTTTGAAAGGCAAAGTTTGTCGCTATTGTTTGAATATAACATCTCATTTAAGTGAAGTAGATGAAGTTTTTCAAGTGGGCAACAATGGatctttatataaaatgactCTGAAGGATATGGTAGCCACTTTTCACCCTTTCAAGGTGGCAGATGATCCAGATTTGCCTAACAAAATATGCGAAAGCTGCATAGACAAAGCCATCTCTTCATATCTTTTCGCTCAGCAGTGTGAACGGGCAGAACGCGCGCTTCGAAACTGCTTTGAAGATATCTACGAAAAGCTGATCAAACTAGACTCCTTAGACGGCCCTAAAAAACGCGGCAGGCAGAAACTAAAACCGAACTACAACAAATTATATGCAGAAAACGAAAAAGTCATTGACTATGCTGAACCTCTATATCACCTTATCAATACTTGTGATGTAATAAATGAGACTCTTAATGAAtttgaatgttataaatgcTGTGAAGTATTACCGAACTTGGAATCATTGTTAAATCATACGAAAAGCCACCCAAAATCCATGTGGTTTCACTGCCGTCTTTGTGGACAATCTTTCCCGAAAATTTACCAGCTGAAAAGGCATTTTCGCCTCGGCCACCCATCACAAAACACagaaaacaaaacatattatgtttgCAATAAATGTGGCACCAGTTCCgaaaactattataaacacttGGAACATGTTGAAAAgcataagtttaaaaatgttttggaGCATTTGGTGGAGAAGAAAATGGATAGATTGTGTACTATATGTTTGAATCAAGGGAATGATATGACAGCACTTGATCAAACAGTTTGTCTTCATGGAGGATGCAAAGAACTGGCTGGAGAAAAGCCATTATACTCTATTTTGGCTTCTACATTACCAGAGATGACTACCTTAGACAATTTAACTGgaacaaaaatatgtaaaatctGCCTTGATAATGCAATTACCTCGTACATTTTCATAAATCAATCGTACTTCGTCAGGAATAGACTGAACAAGTGTGTTAGTTATATGttagataatttaaataaaatgggtGAACCAAATagaaatatttgtatagaaatagGTCAAAGTCTAATTATGACGGCAAGTCCACAGTTTGACGGAAAACTCTTAGATTTTGATAATATAGACGAAAATCCAAATATTGAAGTTCTAGAAGATgaatttagactaaaatatgaaGAAGAACTGGAAACAGATACACAACCATTTACAGAAAATGAATTAAATGATAAACACAgaagtaatataaataaagtaaataagtcAAGTAATATAAAGACAGAGCTACAAACCAACGCCGTCAACGGATATGTTAATGAAAAATCTATTTGCAACGAATATTCAAAGAAATCTGCTAGAAGAAAACCCAAATACACTTGCTGTTTATGTAACAAACATTTCATATCAGACTATTTCTTAAAAAGGCATATTCTGAAGCACATACCTATAAAAGTTGAATGTGATATCTGCGACACACAATTTCAATGCAAATTTTATCTGCACGAACACAAAAAGACCGTCCATTTACAGAAAAGAACAGAATTCGCGTGTTGTAAAGATTGCGGAAGATATTTCAAGAACGAAGACCGTTTGCAATTCCATCGAAAAAGCCACCATAATAAATTCTGCCAACTATGCGAAAAGTTCTTCAAATCTCAACGATATTTCGACAGTCACATGGAAAGACATAAGTATAAGATAGTCATGCAAATGCGAAAGTCTCGACAAAATTGCAGTTTCTGCGAAAAGGATTGTTCAAGCAACAACGAATTTTCTTTACATGTCAACAAAGTTCATTTACAAATAAAACCTTTTAGTTGCGATATGTGTGAGAAACAGTTTTACACGGAATACAACATGAGAAGTCACAAGAAACTTCACAGTGTTATCAGTAAAGAAAAATGTCGTTTCTGCAATAAAATACTTCCTTCGAGAAAGCAGCTCGTCATCCATATACGAAAACATTTGGGAGACAAGCCATTCTGCTGTCAGATATGCAATGAATCTTTCTATTCGCAGTGCAAAGCGAAAAAACACATGAAATTAAGTCACGGTGGTCAATATTGCTGTAAATTCTGTAAAATTGCGTTTGAGACAAAAAAGGATTTGGAGAAACATGTTGGCTCTGCGCATAATAGTTGGTTTTAG
- Protein Sequence
- MDEDFPTLIRPQNPLRIVKTYSKMDKMGSKSNIEQNPTPQHKDIPKPDLSGHTKPVSLTTLKAVTFLLNGTLKGKVCRYCLNITSHLSEVDEVFQVGNNGSLYKMTLKDMVATFHPFKVADDPDLPNKICESCIDKAISSYLFAQQCERAERALRNCFEDIYEKLIKLDSLDGPKKRGRQKLKPNYNKLYAENEKVIDYAEPLYHLINTCDVINETLNEFECYKCCEVLPNLESLLNHTKSHPKSMWFHCRLCGQSFPKIYQLKRHFRLGHPSQNTENKTYYVCNKCGTSSENYYKHLEHVEKHKFKNVLEHLVEKKMDRLCTICLNQGNDMTALDQTVCLHGGCKELAGEKPLYSILASTLPEMTTLDNLTGTKICKICLDNAITSYIFINQSYFVRNRLNKCVSYMLDNLNKMGEPNRNICIEIGQSLIMTASPQFDGKLLDFDNIDENPNIEVLEDEFRLKYEEELETDTQPFTENELNDKHRSNINKVNKSSNIKTELQTNAVNGYVNEKSICNEYSKKSARRKPKYTCCLCNKHFISDYFLKRHILKHIPIKVECDICDTQFQCKFYLHEHKKTVHLQKRTEFACCKDCGRYFKNEDRLQFHRKSHHNKFCQLCEKFFKSQRYFDSHMERHKYKIVMQMRKSRQNCSFCEKDCSSNNEFSLHVNKVHLQIKPFSCDMCEKQFYTEYNMRSHKKLHSVISKEKCRFCNKILPSRKQLVIHIRKHLGDKPFCCQICNESFYSQCKAKKHMKLSHGGQYCCKFCKIAFETKKDLEKHVGSAHNSWF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -