Hchr026164.1
Basic Information
- Insect
- Hemistola chrysoprasaria
- Gene Symbol
- -
- Assembly
- GCA_947063395.1
- Location
- OX346736.1:5775486-5785194[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.27 22 6.5 1.4 1 23 265 288 265 288 0.93 2 11 0.00096 0.078 14.2 5.2 1 23 359 381 359 381 0.96 3 11 4.2 3.4e+02 2.7 4.0 1 22 436 457 436 459 0.88 4 11 0.81 65 5.0 0.4 2 23 483 504 482 504 0.88 5 11 0.0014 0.11 13.7 2.5 2 23 529 550 528 550 0.97 6 11 0.0022 0.17 13.0 4.2 1 23 554 576 554 576 0.98 7 11 0.076 6.1 8.2 0.1 3 14 598 609 596 622 0.87 8 11 6.6e-05 0.0053 17.8 0.7 1 23 629 652 629 652 0.98 9 11 0.035 2.8 9.2 0.4 1 23 658 680 658 680 0.97 10 11 0.0013 0.1 13.7 3.5 1 23 686 708 686 708 0.98 11 11 0.00096 0.077 14.2 1.2 3 23 716 737 714 737 0.95
Sequence Information
- Coding Sequence
- ATGGAAGATAAAAACAAGGCATACGGCAAATGCCGCTGTTGTTTAGCTGAGGGAGATCACCGCTTCATTACGAAGGAATACTTGCATAACGGCTTACGAGAAATCTATTTTGACATGATGAATACGATTAATTTGAACCTGTCACAAGACCCCCGATTAACCCAGCTGATATGCTCCGACTGTGTCAACTCTCTCCGAGATGCTGACAGGTTCCACAAAATGGTTGCAAACACTGAACAACTGCTTATAAAGTTTTATACTGATGATAACTCTGATATAGtTGAAACGAAAGCCACAAAATACTCCGTAGACTttgaagaaataataaaaattgataGCGATAGTGATCATACACAAGCGGATTGTGAAATAACAGAGTTAAGAGATGATAATACTTATGAGGAATCTGTTATtaaagAAATGACTATGCCAATATCAAAGATCTTAGCAAGGGCGAAGAGGTCACAGATGCAGGAGCTGAAGTCAAAACAAGCAAAAAATGTCCAAGAGCTTATTGCATGCAATTCAAGCCACGGTATGCAGATAGTCAAGACGCCGAATGGACGGAATATCATGATTCTAGCtaaaaattctaaacaaaacgATGTTAGCATACCTAAACGTAACCTAGAACTGCGTAGAGAACCTGAAACGCCAAGCAATAGACGCTGGGCCATCGCCATATCAAAAACCGATCTAAAACCAAAATCTTGGATCAAAAAACATCTCCTACCAAACTTACACACGATCCTCACAAACTCCACTCTAACTCCTTTCAGACACCATTCGTATTACTTCTGTTTATATTGCAATGACTCTTTTATCTCTTTCCAAAAGTTAAAAAATCACAGTGTTACTGCTCATGAAAAAATAACATGCTTAGATATAAAGCTGAGTACGTTTCCGATAGTAAAAGTCGATATAAGTAACGTTTCGTGCAAACTTTGCTCGGACAAGTTGAAAACCGTTGAAGAATTAGTCAAACATTTCGAAGAAAAACACCAAATTGCATTTTATGACACACCAAACAAGCCGAGCGATTATTTCCTTGGTTTCGATTTGGGTACGGACGAATTTAAGTGTCATGTGTGTGATAAAGTTTTTAGATTCTTTCGGCCGTTGTGCAAGCATATGGGCGAGCATTGTGGGACTTTTGTTTGCGATGTTTGTGATAACAAAGAGCATTATCTCCCTCGCACACCCTCCGATACCCAAACAATAAAGGGAGACAGCAACAGAACTTTATTAAACATCTATCAGGTTCTAAAGAACTCTACTTTAATACCTTTCAAGAACAGCTCATATTTCTATTGCTATTACTGCAAAATCCGTTATATATCCTTTTTAGAGTTGCGGCAACACTGTCAAAGTTTACACGATGATATAAAGATATCTGACATAACATTGTCATCACAGAACTTCATCAATGTTGACATTAGCAACCTGAAATGCAAAATATGCTCGAAAGAGTTGAAAATGCAAGAATTAATCGAACATTTGCAGTCAAGTCATGATATAAAGTTTTTTGAGTCATCCTTAAAGCCGTGCAACCTTTTTGTGGGTTTTGATATGGACTTAGCAAACAAATGTCATTTATGTGATAAGGAATTCTCATATTTTAGAAGTCTTGGCCAGCATATGAGCGAGCACGTGGGAACTTTTGTGTGTGACATTTGCGCTAAGAAATGTATCACCAAAGAGAAATTAAAAAGTCACATTCATAGACACGGCCCTAAGTCGGAGTCGAACAAAAAAAGGCAAAACGATTACTGCAAAAACGCTCGGACGAATTGTCCAATTTGCCCGCAATCTTTCACTTCATCGGGCCGGTACAAACAGCGGTTGCTCCATATGGAAACCGCTCACGGCATTAAAAGCCCGACTTTCAAGTGTGACCAGTgcgaaaaaatatattcaaactcagAAGGGTTGGCCTCTCATAAAAGAATGAAACATAGAATTCGTAAACAGTATGAATGTAATTTGTGTGAATTTATAACTGTACATGCAGATTCTTTTCAAATACATACGGACGTGCATAATGATGTGAAGAGGTATAAATGCGAATTTTGTGAAAAGAGGTTTAGAAGTAAGAATACGCGCAAACTTCACGTGAAGGTCCATTTGAATGATAAAAGTCACTTGTGTTCTCTATGCCCCGCGGCGTTCATTCAGAAAATTAGTTtgaaaaaacatttgaaatctAAACATCCTGAATGCGATGagctttga
- Protein Sequence
- MEDKNKAYGKCRCCLAEGDHRFITKEYLHNGLREIYFDMMNTINLNLSQDPRLTQLICSDCVNSLRDADRFHKMVANTEQLLIKFYTDDNSDIVETKATKYSVDFEEIIKIDSDSDHTQADCEITELRDDNTYEESVIKEMTMPISKILARAKRSQMQELKSKQAKNVQELIACNSSHGMQIVKTPNGRNIMILAKNSKQNDVSIPKRNLELRREPETPSNRRWAIAISKTDLKPKSWIKKHLLPNLHTILTNSTLTPFRHHSYYFCLYCNDSFISFQKLKNHSVTAHEKITCLDIKLSTFPIVKVDISNVSCKLCSDKLKTVEELVKHFEEKHQIAFYDTPNKPSDYFLGFDLGTDEFKCHVCDKVFRFFRPLCKHMGEHCGTFVCDVCDNKEHYLPRTPSDTQTIKGDSNRTLLNIYQVLKNSTLIPFKNSSYFYCYYCKIRYISFLELRQHCQSLHDDIKISDITLSSQNFINVDISNLKCKICSKELKMQELIEHLQSSHDIKFFESSLKPCNLFVGFDMDLANKCHLCDKEFSYFRSLGQHMSEHVGTFVCDICAKKCITKEKLKSHIHRHGPKSESNKKRQNDYCKNARTNCPICPQSFTSSGRYKQRLLHMETAHGIKSPTFKCDQCEKIYSNSEGLASHKRMKHRIRKQYECNLCEFITVHADSFQIHTDVHNDVKRYKCEFCEKRFRSKNTRKLHVKVHLNDKSHLCSLCPAAFIQKISLKKHLKSKHPECDEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -