Hchr027230.1
Basic Information
- Insect
- Hemistola chrysoprasaria
- Gene Symbol
- -
- Assembly
- GCA_947063395.1
- Location
- OX346738.1:5473067-5493119[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 9.8 7.9e+02 1.5 0.5 2 23 278 299 277 299 0.89 2 11 4.6 3.7e+02 2.6 2.7 1 20 303 322 303 324 0.91 3 11 0.0026 0.21 12.8 3.4 3 23 333 354 332 354 0.95 4 11 0.0048 0.39 12.0 1.0 2 21 359 378 359 379 0.92 5 11 0.00027 0.022 15.9 0.9 2 23 395 416 394 416 0.94 6 11 5.2e-05 0.0042 18.1 0.4 1 23 421 443 421 443 0.98 7 11 0.05 4 8.8 5.6 1 21 452 472 452 477 0.94 8 11 0.00041 0.033 15.3 1.7 1 23 485 508 485 508 0.92 9 11 0.0015 0.12 13.6 0.3 1 23 514 537 514 537 0.96 10 11 0.0072 0.58 11.4 0.7 3 19 550 566 548 571 0.90 11 11 0.043 3.4 9.0 1.2 1 23 580 603 580 603 0.98
Sequence Information
- Coding Sequence
- ATGAAggaaattgatataaatattgagGGATATAATGTGAACGGCATATGTGTTGGGTGTTTGAATTATAATCGTAAAATGTTTTACGACGATGATGTGAAAGAGTGTTTCAAATTAATAGCAGGTATTGATGTACCAGACGGGCTCCAAATCCAGGTTTGCTGGGAGTGTCTTGCAGCTGTGAAGAACATTGCTCAATTTCAAGATAGAATATTGAGATCATATGATATATTACTTGCTTATTCTCAGaggCATACATTCCTGAATTCCCCGGAAGACTTCACAATACATGCCAGCACACGTTTCCATACGATATCTCTTGAAAGTATTGATTTTACTCAATCACTAAAAGATGACGAGATTGACACCAAAGATGATATAAAACAGGAGGAATTAATACTTGATATAGAGTTGGGCCCAGTAAAGGAAGAACCTATTTCCGAACATTTGGATGATTATCATGATAGCGAAAATGATTTACTTGTGGAAGAGGTCCAGAAGGAAGAAGACGTATCTTCTGATGAGGATCTTCAACTGTCTGAACTcaaaaagaagaaaaacaaaAGAGACAAAAAGAAAAAGGATAAGACGAAAGATAAgGAAATCGATTTAAGGTTATCGCGAAAATTGAAGAATCTTCCTCAAAGCGTAGTCAAATTGTACACGATGACCGAAGCTGAGATGTGGTCAATCAGACAGGAGGATGTGAGCTGCCAGGAATTCGAACGGATCAAGTTTAAGTGCGCGGATTGTATATTGGGATTCAATACGGAGAAGCTGAGAGATGCACATTTCAATGGAAAACATAAGAAGAAAAACTCATCGGCACAACAGTGCGACGTGTGCAAAGCGTACTTCCTAACAAGCGACAAGATCTCAACTCACCGAGAGCTCCATCTGACCGCATATAGATGCACGGTGTGTTCTCTCACGACCACGCTCAAACGGCGAATGTTGAGGCACCACTGTGCGGCCGATGTACAGCCTGTTGAACACTGTGCAGACTGTGATATGGTGTTTAGtacAAAAGCGAAGTTGAACTACCACAAGAATGTGTGCCATCAGGAGAAGCCACAGTGTGATTGTTGCGGAAAGGTGTTTGCCAACAAAATGACACTCAAGTATCATCTCAAgatTTTGCCacaaaacaaagaagaaaaaccaAAAGAGAAACTGTACATACCCTGTAAAGGTTGCAACAAAGTGTTCCATTCCAAGAAAAGTTATAGAGCTCATGTTGTAATACACGACGGCAGAACGTACCCATGCCCTATATGTGGGAAACAATTCCAATGGAAACGTAACTTGTCACGTCACACGCGAGCTCATAGAGAACGCGAAGTCGGGGCGACACACGAGTGCAGGGAGTGTATGAAGACCTTCAGTTCTAGGGACTGTTATAATAATCATATGAAGCTGAGCAAACGACACGCGCATCCTAACACTTATGTTCACGAATGCAATtattgtggtaaaaagttcccAACGAAATGGTGTATGGTGGATCACATAGATTGGGACCACTTGAAGCGAGTCAAATATCAGTGCAACGTCTGTTTTAAGGCGTTCAAAACAGCAAAGATAATGGTGGCGCATatgaataatatacataatggCAAGAAGAGAGAGCTTGAAGGGGAACATCTGTGTGATATCTGTGGAAAATCTTATAAGACTGAGAAACGTCTGAAAGGCCACGTGTGGTCTATGCACACACAACGGTCTACCGGCAAGAGCTACAAATGTAAGCTATGTGCGGCGACCTTCACCTGGCAGACCTCTATATACAAACATATGAAAATGATGCACGATAACAAGAGAACCAAGcCACCCCGTGCTCCACCGCTCGTCAAAAAACAAGATCCCTATCCTGAAGTGGAGCTCACCAATAGAATGTATTTCCACCAAAACATTGCAACCATAGCTCAGGGCCCTATGCAGCCTCTACCTCAACAGGGGCTAATTACCAATGGACTGTAG
- Protein Sequence
- MKEIDINIEGYNVNGICVGCLNYNRKMFYDDDVKECFKLIAGIDVPDGLQIQVCWECLAAVKNIAQFQDRILRSYDILLAYSQRHTFLNSPEDFTIHASTRFHTISLESIDFTQSLKDDEIDTKDDIKQEELILDIELGPVKEEPISEHLDDYHDSENDLLVEEVQKEEDVSSDEDLQLSELKKKKNKRDKKKKDKTKDKEIDLRLSRKLKNLPQSVVKLYTMTEAEMWSIRQEDVSCQEFERIKFKCADCILGFNTEKLRDAHFNGKHKKKNSSAQQCDVCKAYFLTSDKISTHRELHLTAYRCTVCSLTTTLKRRMLRHHCAADVQPVEHCADCDMVFSTKAKLNYHKNVCHQEKPQCDCCGKVFANKMTLKYHLKILPQNKEEKPKEKLYIPCKGCNKVFHSKKSYRAHVVIHDGRTYPCPICGKQFQWKRNLSRHTRAHREREVGATHECRECMKTFSSRDCYNNHMKLSKRHAHPNTYVHECNYCGKKFPTKWCMVDHIDWDHLKRVKYQCNVCFKAFKTAKIMVAHMNNIHNGKKRELEGEHLCDICGKSYKTEKRLKGHVWSMHTQRSTGKSYKCKLCAATFTWQTSIYKHMKMMHDNKRTKPPRAPPLVKKQDPYPEVELTNRMYFHQNIATIAQGPMQPLPQQGLITNGL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -