Hchr027304.1
Basic Information
- Insect
- Hemistola chrysoprasaria
- Gene Symbol
- -
- Assembly
- GCA_947063395.1
- Location
- OX346738.1:6541180-6555012[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.034 2.7 9.3 4.4 1 23 315 337 315 337 0.98 2 9 0.015 1.2 10.4 3.5 2 23 345 366 344 366 0.96 3 9 0.01 0.83 10.9 4.0 1 21 400 420 400 422 0.94 4 9 1.2e-05 0.00093 20.2 0.8 2 23 427 448 426 448 0.93 5 9 1.2e-05 0.00097 20.2 0.8 1 23 454 476 454 476 0.97 6 9 0.025 2 9.7 0.4 2 21 483 502 482 507 0.92 7 9 0.0043 0.35 12.1 0.4 1 23 515 538 515 538 0.96 8 9 0.028 2.2 9.6 0.5 1 23 544 569 544 569 0.97 9 9 0.0065 0.52 11.5 1.1 1 14 578 591 578 592 0.91
Sequence Information
- Coding Sequence
- ATGAAGTCCGAATTAAATTTGGTCTCGGTGTCGCTGTGTATTGCATGTTTGAGCTCGGACAGGCAAACTAATATCCTACAAGAAGGTGAAAGTAAACAGATGTTTCATGCATTTCTGAATAGTTTTGAATTAGCCAACCGTGTGATATCGATATGTTTCGAATGCAAAAGGCGTCTAAATAATGCTCTAAAATTCAGGAAACAAGTTAATAGAGCTCAGCATTATCTTGTTAATAATATGGGACATACTATACCTAGATCACTTTCAAACCTAAGCACAACAAACATAGATCTATTTTACTTTAAACCTTCAAAATTCAAGAAAAATTATGATGATTTACAAAATAGTACTAAAAAATCGAACAAAAAACGTAAAACAAGACACAATGTATCTTCAGATACTGAAAACGATTATTATGATGATGTTTTACCAGTTGAGACTTTAGAATGTGAAACTTTACAAAAAGGGACTTTACACAGTGGCAATTTACAAAGTGAGACTTTACAAAGAGGGAATTTACAGAATGATATTTTACAGAAAAGTGCAAATCAGTCAAGTATATTGATAACAGGTGTAGATTGGGATATAAAAGTAGAAGCGGTAGATGAACAATTAGAATTGAAGAAAGAATTAGAAGAGAATAATGAAAGAATAGAAGAAGTGAATGTTCCGGAGAAGAAAGACGATTCTTTTAATGATTCTGATGATGAACCTTTGCATAATATTCAAGCAATTAAACACAAAAGCATTAAAGTAAAGAAAATTAAGAAGGAAAAGAAAGgTCGAAGCTCCGGCGGTGTAGTAGAAGCTGAGTGGGTGGATGACAAGATACGTTCCTTAAATCTCGCCCCTGGACTCATTGACGTGGTTGTACTTACTTGGGATGAGGTAGAGAGTGAGCGAGAGAGAGCATCAGTCTCTCCTCGTTACACTCAGCTAGAGTTCAGATGTCAACACTGTGTAGTCGGCTTCAATCATGTACTCAAACTGAAAAAACACATGGAGAGACACGCGCCTGAAGCGGGTGATCTAGAGTGCGAAGTGTGTAAGGTTCGTTTTAAAACTAACAGCTCTCTACTCTGCCACAAGAGAAGACATCGAATAAGATGGCGTTGTAGAACGTGTGGGGGCCTATACTCGCGCGCGGGCGTGGCGGGGGACCACGCGGCCCGCGAGCACCGCCTGCCCCCCCCCGCGCACGCCTGCCACGTCTGCGGGGGGACCTACACTTCTCTGAGCAAGTTGCGCGGTCACATGCGCTGTCATGGAGAGAAACAAAGCTGTGAGCAATGTGGGAAGACGTTCGCTAACAAATCTGCTCTAAGGACGCACTCGTTTATCCACTCGGATCAGAAGGACTTCTCATGCGAGGAGTGCGGGAAGCAGTTCCGCTTCAAGAAAGCTCTAGAGATACACAGAGTGACGCATCGACCGAGCGAGTTGTTGTACTGCGCCGAGTGCGATGTGAATTTCAAGAACAGTATATCGTTCTACCAACACATCAATTATTCCATGAAACACATACACCCGGACAAATTAAAATACGCCTGCGAGTTTTGTTCGCGTCGTTTCTCGAAGGCGGTCCGACTCGAGGAGCACAGACTCTCCATACATCTGAAACTAACGCCACACAAATGTACCTTCGACGGATGTTCTTTTGCGAGCGCGTCTCGTCCCGCGCTCCGCACACACATCCGCATGATACACAGACAGAGGAAGCTCGACAGGAACTATATATGTCACACGTGCGGGAAGGCTTTCACTCGGTCGAAGTATGACCAAAGAGTGTCGGAAGTTGCAATTGTCCGCGGGTGTCGGATGCTCGGCGCTGCTGACTCGGCTCCTCGTGGTAGTGCCGTGTGCAAAAGTAGGTTATACTACATTGCGGTTTCCAGGTAG
- Protein Sequence
- MKSELNLVSVSLCIACLSSDRQTNILQEGESKQMFHAFLNSFELANRVISICFECKRRLNNALKFRKQVNRAQHYLVNNMGHTIPRSLSNLSTTNIDLFYFKPSKFKKNYDDLQNSTKKSNKKRKTRHNVSSDTENDYYDDVLPVETLECETLQKGTLHSGNLQSETLQRGNLQNDILQKSANQSSILITGVDWDIKVEAVDEQLELKKELEENNERIEEVNVPEKKDDSFNDSDDEPLHNIQAIKHKSIKVKKIKKEKKGRSSGGVVEAEWVDDKIRSLNLAPGLIDVVVLTWDEVESERERASVSPRYTQLEFRCQHCVVGFNHVLKLKKHMERHAPEAGDLECEVCKVRFKTNSSLLCHKRRHRIRWRCRTCGGLYSRAGVAGDHAAREHRLPPPAHACHVCGGTYTSLSKLRGHMRCHGEKQSCEQCGKTFANKSALRTHSFIHSDQKDFSCEECGKQFRFKKALEIHRVTHRPSELLYCAECDVNFKNSISFYQHINYSMKHIHPDKLKYACEFCSRRFSKAVRLEEHRLSIHLKLTPHKCTFDGCSFASASRPALRTHIRMIHRQRKLDRNYICHTCGKAFTRSKYDQRVSEVAIVRGCRMLGAADSAPRGSAVCKSRLYYIAVSR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -