Hchr027064.1
Basic Information
- Insect
- Hemistola chrysoprasaria
- Gene Symbol
- -
- Assembly
- GCA_947063395.1
- Location
- OX346738.1:3345949-3359848[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1 81 4.7 0.2 1 23 238 261 238 261 0.93 2 10 0.87 70 4.9 1.9 1 23 293 315 293 315 0.97 3 10 0.005 0.4 11.9 1.7 1 23 364 387 364 387 0.95 4 10 1.8e-05 0.0014 19.6 3.2 2 23 392 413 391 413 0.97 5 10 0.07 5.7 8.3 1.0 2 23 421 441 421 441 0.96 6 10 0.00036 0.029 15.5 2.6 1 21 447 467 447 472 0.94 7 10 0.00095 0.076 14.2 0.3 1 23 480 503 480 503 0.94 8 10 0.00057 0.046 14.9 0.1 1 23 509 532 509 532 0.96 9 10 1.5e-06 0.00012 23.0 0.5 1 23 542 564 542 564 0.95 10 10 3.2e-05 0.0025 18.8 1.0 2 23 571 593 570 593 0.96
Sequence Information
- Coding Sequence
- atggaGCAAGACGTAGATCAGAGTTACAGAACCGTGTGCACCACTTGTCTCAGCAGCGATAgggatttatttgatttatctCTGATGCCCCAGCTTCTGGATATATTTAATTTGCTGATGTACGATTTCGCTGGAGACCGCTTGGATATACCAGAAATGAGATATTTAATATGCTGGGAATGCCTAGCCATGATGAAACGAGTGCACAAGTTCAAGTGGCAGGTGCACAGTGCACAGGAACACCTGAGATTGCTCGCTTTAAGCTTAGCACAGGAGGGTGACCACACATACCTATCCCAATCGCTATCCACATTAGCGATTGAAAGTAAATCAGACTACGATAAAATATTCTTTGACTACACCAGCAACATGGACATTACTCAGTATATTACCATCAACTCTGGGGACAATGTGAAGAATGAGCATTTTGAATTGCATCCCGTTAGCAATGTGTTGGATATGGATGATCATATTTTAGGAGtgCCTGAAATTGTATTAGAGAATGACACTGGTCTCTCTCACATTATAGTGGAAAACAATTTTTCAAAAGCAGACGGCAAAGGACCCTGTATTACTATACAGCCTTTGACACCGAAATTGGAACATAAAGAGGAAACTATTCCTAGTTATATAACAGAACATATGAGCGAAGCAGAAATGATTGCGACCAGaGAAGAGATGAAGAAAAAAGTGCAATATGCCAGTTCAGTTTACAAGTGTGAATTATGCATCATTGGTTTTTACACACAACAACAAGTTGAAGATCATTTTGAAAGCGCGCATAGAGCTAAACCCGGCCTAGTATCCTGCAAAGTGTGCTACCTATATATAGACGAAAAGAAACTACTAACTCACCAACACCAACATTATTTACGATACATTTGCAAATTGTGTTCTCATGTGGAATACAGCAAGAAATTAATACAACTCCATATAAGGACGCATATGACTAAACCCGTGCCTTCCGCGGTTATACAGATCGAGGGGCAAGAGCCGAAAAGAAAGaaaaagaaaaagaaacaaCAAGAAACAGCGCCCCCAAAACCAGGTGACCTAAGAAAACTTCTATCCAAGACTACAATAGAAGGATATAAATGCTTGGAATGCGATATGTTTTTCAAAAATTCCCGCGCTAGAAAGTCTCATGTCGCACGTTTTCATAGAGAAGGACTGCAATGTGACCATTGTAAGAAACGATTTGTTAATAAAGGAACTTTATCTACGCATTTGAGACTTCACGAAGGCCCTCTACCAAAGGAAGAATGCCCAATATGCCACAAGATGGTCCGTTCTATACAAATAAAGTATCACATACAAAGACACCAAAACAAAAGCAGATACGAATGCAAGGATTGTAACAAAATATTCTCTCATCTGGCCACTTATCACGCGCATCTGAAATATTCACGGGCACACGCTTCGGACTCCGTTTTCAAATTTCCTTGTCCAATGTGTAACAAAGGATATCCAACTAAAGAAGCGATGCAAGACCACTTCAATTATCAGCATTTAGGAAAAACATCACATAAATGTCCTATATGTGAAAAGCCAATAGCTTCAAAATCCAACGTGGACAAGCACATAGCAAGAGTCCACGGAGAGAAGAAAGATAAGCCGAGGAACCATATCTGCGATATTTGTGGGAAATCTTTTACGGATAAAAAAGCGTTAACCCAGCACGAAGCGATCCACTCCGGCGCGAGGCCTCTAGTCTGCGACATTTGCCAACAGACATTCAAACAGAAAGCATCTCTGTACACGCATAGAAAACGAGTGCACAAAGTTACTCCTTTGAAGAAAGAAGTACATTATATGGACAGACCGCTTGTCGAGTAA
- Protein Sequence
- MEQDVDQSYRTVCTTCLSSDRDLFDLSLMPQLLDIFNLLMYDFAGDRLDIPEMRYLICWECLAMMKRVHKFKWQVHSAQEHLRLLALSLAQEGDHTYLSQSLSTLAIESKSDYDKIFFDYTSNMDITQYITINSGDNVKNEHFELHPVSNVLDMDDHILGVPEIVLENDTGLSHIIVENNFSKADGKGPCITIQPLTPKLEHKEETIPSYITEHMSEAEMIATREEMKKKVQYASSVYKCELCIIGFYTQQQVEDHFESAHRAKPGLVSCKVCYLYIDEKKLLTHQHQHYLRYICKLCSHVEYSKKLIQLHIRTHMTKPVPSAVIQIEGQEPKRKKKKKKQQETAPPKPGDLRKLLSKTTIEGYKCLECDMFFKNSRARKSHVARFHREGLQCDHCKKRFVNKGTLSTHLRLHEGPLPKEECPICHKMVRSIQIKYHIQRHQNKSRYECKDCNKIFSHLATYHAHLKYSRAHASDSVFKFPCPMCNKGYPTKEAMQDHFNYQHLGKTSHKCPICEKPIASKSNVDKHIARVHGEKKDKPRNHICDICGKSFTDKKALTQHEAIHSGARPLVCDICQQTFKQKASLYTHRKRVHKVTPLKKEVHYMDRPLVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -