Hchr026866.1
Basic Information
- Insect
- Hemistola chrysoprasaria
- Gene Symbol
- -
- Assembly
- GCA_947063395.1
- Location
- OX346738.1:870948-887996[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0025 0.2 12.9 1.6 1 23 328 350 328 350 0.99 2 11 0.00023 0.019 16.1 6.7 1 23 357 379 357 380 0.95 3 11 0.066 5.3 8.4 1.8 1 23 384 406 384 406 0.97 4 11 0.012 0.93 10.8 1.7 1 23 411 434 411 434 0.97 5 11 0.0034 0.27 12.4 0.2 1 23 438 461 438 461 0.94 6 11 0.33 26 6.2 0.1 2 20 474 492 474 494 0.89 7 11 1.2 96 4.4 0.3 2 23 548 570 547 570 0.94 8 11 0.03 2.4 9.4 0.6 2 20 586 604 585 607 0.91 9 11 1.6e-05 0.0013 19.8 1.7 1 23 613 635 613 635 0.99 10 11 4.2e-05 0.0034 18.4 4.7 1 23 642 664 642 664 0.97 11 11 0.0001 0.0084 17.2 1.3 1 23 670 693 670 693 0.93
Sequence Information
- Coding Sequence
- ATGCGGTGCTGCGTGCCTGACTGCAAAAATGACTCAAGACACAGCTCTAAATCACAAGGAATCACATTCCACacCTTTCCAACAACGCCTGCCCATCGTACAGCCTGGCTAAAGGCCATAAACAAGCAAGACTGGCATCCGAAGGAGCGTAGTGCGATATGCTCCGTTCATTTTATGCCTGATGACCTTTATTTCACAAAAACTGGGCTTAGGAAGGTTCGCGCGGGCGCTGTTCCTGTCATAACGcagGCATGTCGCATGTGTCTCGCAATAGATACTAGACTGTTTTCCATGAATCTCTACAACTTGGAGCAACCATTTGAAAGATTCACCGGCATATCTcCAAATATAGAAGACCGTTTACCACAACATTTGTGTTATAATTGTGCTCAGAGATTACTCAAAGCGGATTCCTTCAGAAGTAGCAGTATTAAAGCTAATTCATTTTTGATTGATCTACTTAAGGAGAATGAGCTATCAAAAGACACAATAAAAGCAATAGACCGCGATACTCACAATCTAACTACACCATTATCAATCAAACACAATTTACCAGATCAATACGAATTAGAACTGGAATATGTGGAGGCAAAACAAGAACCCTTAGATAATCTACTCATAGAGGAACACACAGATAATACACCGTTAGAAAATGATATATTTGTCgatgaaataaaagattttgacAATGATTTTCATTCGGATGACGATTTGGATAAAACTTACACGACGAAGGGAGATGATTTCGATTCAGAAGACAGTGTCCCTCTAGAAGTTActagaaagaagaagaagaaggaaaAGGCAAAGACTAAGAAGGTAAGAATAAAACCAGAAGAACCAAAGATAGATAGACGACGCAAACCATTTTTAAACCAAGACCTAAACGAAACGCTATTCACAGTGACAAATCTAACCATAGAGGAACAATTAGCTGAAATAGAGAAGAGGCAGTATACGGATAATTATAAACATTCTTTGTATAAATGTACAGAGTGTTTTAAAGGGTTTTTGGATCAAACGGCTTACAATTCGCATATGAGCAGGCATACCGATGAATGCGGTGAATACCGCTGCGAGATATGCAAGACACACTTCAAACAATCCCACGCGTTACGGAAACATATAACCGCTCATCATACCCAACGATTCAGTTGTAACCAATGTCCGTATGTCacgacacacagacagacagcgAGACTGCACGAGCGGTGGCATAAAGGAACTAAATATAGCTGTCCACACTGTCAGGAGGAGTTTGTTAAGTTCACAACATACATGGGCCACGTCCGCATAAAGCACCCTTCAGATTTCGTGTGCGAACTTTGTGGATATTCCTTCGTCAGCGCTAAAGGAATagaattacataaaaaattgAAGCATCGCACCGTAAATGGGCCTGTACCGGCAGACGGCCCGTATTGCAACGAATGCGACGTAAGATTCGCGTCAGCCGAAGCTCATAGAAAACATCTAGCTGTCTCTGCGAAACATTCCAGCAAGGAAAACCGGGAGGCGAATAAAGCTAATAAGGGACAACGCACTAGGGAAATACGtgAAAGAATATCAAAACAGGAATCTGAACCAGATGACCCGAGACGGATATATCCAAGTCAATTGAAAAAGGCTGAAGGTCCCATACCTTGTGAGCagTGTGGTATCCAATTGGAAGATTCTCGCGCGTACCACGGTCACTTTCGACGCATGCATCCAGATAAGAATAGAACTAATTATCCTTCTATGAAGAGCCCTTGTATGTGCGAACTCTGCGGACGAATATTTCAGAGCTACGCCCTCTTAAAAGACCACACATGGGTCCACACAGGCGAACGCCCGTTCAAATGCGACCAGTGCGACAAGTCGTTCCGCATGAAGCAGCGACTAGTCGCACACAGACGCGTCCACAGTCTAGTGAAGGCTAGCTACATGTGTGCCGTGTGCGGGAAACATTTCTCTACGCATAGCAACAGGCAGAGACATATGTTTATCCACACCGGTCTAAAGCCGTTCAAATGCGAGATGTGCGGCAAAGGGTTCAAACACGCGAGTGAAAAACGAGCTCATGTCACCTATGTACATCTCAAGAAACCTTGGCCTAAACGAGCCAGAGGGAAGCGACTTAGACAGgATTCTTTGCCTCCGCAAGGGGATACGAGCGCGAACGAAATGGATATACAACCTGTGTGGCCGTCTTGTGTATGTGTGGCTCCGAATTGA
- Protein Sequence
- MRCCVPDCKNDSRHSSKSQGITFHTFPTTPAHRTAWLKAINKQDWHPKERSAICSVHFMPDDLYFTKTGLRKVRAGAVPVITQACRMCLAIDTRLFSMNLYNLEQPFERFTGISPNIEDRLPQHLCYNCAQRLLKADSFRSSSIKANSFLIDLLKENELSKDTIKAIDRDTHNLTTPLSIKHNLPDQYELELEYVEAKQEPLDNLLIEEHTDNTPLENDIFVDEIKDFDNDFHSDDDLDKTYTTKGDDFDSEDSVPLEVTRKKKKKEKAKTKKVRIKPEEPKIDRRRKPFLNQDLNETLFTVTNLTIEEQLAEIEKRQYTDNYKHSLYKCTECFKGFLDQTAYNSHMSRHTDECGEYRCEICKTHFKQSHALRKHITAHHTQRFSCNQCPYVTTHRQTARLHERWHKGTKYSCPHCQEEFVKFTTYMGHVRIKHPSDFVCELCGYSFVSAKGIELHKKLKHRTVNGPVPADGPYCNECDVRFASAEAHRKHLAVSAKHSSKENREANKANKGQRTREIRERISKQESEPDDPRRIYPSQLKKAEGPIPCEQCGIQLEDSRAYHGHFRRMHPDKNRTNYPSMKSPCMCELCGRIFQSYALLKDHTWVHTGERPFKCDQCDKSFRMKQRLVAHRRVHSLVKASYMCAVCGKHFSTHSNRQRHMFIHTGLKPFKCEMCGKGFKHASEKRAHVTYVHLKKPWPKRARGKRLRQDSLPPQGDTSANEMDIQPVWPSCVCVAPN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00790341;
- 90% Identity
- iTF_00790341;
- 80% Identity
- iTF_00790341;