Basic Information

Insect: Hemistola chrysoprasaria
Gene Symbol: -
Assembly: GCA_947063395.1
Location: OX346736.1:6201179-6205149[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.99 80 4.7 5.3 1 23 10 33 10 33 0.97

2 14 5e-05 0.004 18.2 0.7 1 23 39 62 39 62 0.97

3 14 0.0039 0.31 12.3 2.3 1 23 68 90 68 90 0.98

4 14 0.94 76 4.7 1.9 1 23 221 243 221 243 0.96

5 14 9.6e-05 0.0078 17.3 1.3 1 23 247 269 247 269 0.97

6 14 0.42 34 5.8 0.2 1 13 274 286 274 288 0.88

7 14 0.00021 0.017 16.2 0.6 1 23 418 440 418 440 0.97

8 14 4.1e-05 0.0033 18.5 0.0 1 23 444 466 444 466 0.96

9 14 1.3 1.1e+02 4.3 1.4 1 23 473 496 473 496 0.94

10 14 2.3e-06 0.00019 22.4 1.6 1 23 501 524 501 524 0.98

11 14 0.023 1.9 9.8 0.0 1 23 530 553 530 553 0.97

12 14 0.0016 0.13 13.4 3.0 1 23 559 581 559 581 0.96

13 14 1.3e-07 1.1e-05 26.3 1.4 1 23 588 610 588 610 0.99

14 14 2.3e-05 0.0018 19.3 1.6 1 23 616 639 616 639 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.99	80	4.7	5.3	1	23	10	33	10	33	0.97
2	14	5e-05	0.004	18.2	0.7	1	23	39	62	39	62	0.97
3	14	0.0039	0.31	12.3	2.3	1	23	68	90	68	90	0.98
4	14	0.94	76	4.7	1.9	1	23	221	243	221	243	0.96
5	14	9.6e-05	0.0078	17.3	1.3	1	23	247	269	247	269	0.97
6	14	0.42	34	5.8	0.2	1	13	274	286	274	288	0.88
7	14	0.00021	0.017	16.2	0.6	1	23	418	440	418	440	0.97
8	14	4.1e-05	0.0033	18.5	0.0	1	23	444	466	444	466	0.96
9	14	1.3	1.1e+02	4.3	1.4	1	23	473	496	473	496	0.94
10	14	2.3e-06	0.00019	22.4	1.6	1	23	501	524	501	524	0.98
11	14	0.023	1.9	9.8	0.0	1	23	530	553	530	553	0.97
12	14	0.0016	0.13	13.4	3.0	1	23	559	581	559	581	0.96
13	14	1.3e-07	1.1e-05	26.3	1.4	1	23	588	610	588	610	0.99
14	14	2.3e-05	0.0018	19.3	1.6	1	23	616	639	616	639	0.98

Sequence Information

Coding Sequence: ATGGTGATAGAACATAACGTATTTCCTCACAAGTGTGCCTATTGCAAGGACTCGTTCGAACATTACTTCCAAAGGACCGAACATATGAGTACCGTTCACAATAAGAACATTGAATATCCGTGCAGTGTGTGCTCCAAGATCTTTACGACATCCTCAAAAAGAGCATCTCATATGCGAAATATACATGTGAGGGATAAACGATTCGAATGCAGTGTATGTACCAGCAGCTTTATAACGGGTTGCGCATTAAAAAGGCACATGTATAGACATACTGGCGggccCGTCACCATAAATTGGACGCAGAAGCGCAGGCAGTTCGGAGATGCCCGTGACAATGCGGCCATTATTCTTCAGTATTCCAACGTGTGCCCCTTTGGATTCCACCAAAACACTTTCTATTGCGCGTACTGCTCTTATCTTTCCCCAGAATTTGACAGAATCAAAGATCATACTGAAATTCACAAAGATAGATCGAGAGCTGTTAACAATTTGGGCAGTAGTTCGACATTCAAAGCAGACGTCACGGATTTAATTTGCGAACTGTGCAAAAATGATATGAAAGATATAAATGCACTGTTCGAACATTTGATCGCGGTCCACGAGAAGCCTTTAGTGAAAGAGCTTGGTCCTGGAATTTTTCCTTTTCTTTTAAGTAATGGATTCACCTGCGCCGACTGCAGACTGAATTTCAACTGTTTCCTAGAATTAAACAGGCATGTTAATGTGCATTACCCTAACCACGTCTGTTCTCAATGTGGAAAAGGCTTCTCATCCGCGAACAGACTGAGGTCTCATGTTAATAACCACGACAAGAAGTCGCATAAATGTGCTGTATGTGATGAGACCTTTCCAACGCTCTACGGTAGACGACCCACCATAAAATCTGGAACGCCGAAACACATCAAGTACGGCGACGCCCGAGACAATGCGGCCATTATCCTCCAGTGTTCCAACGTGTGCCCGTTCAAATACTTCCGAAACCTTTTCTATTGTGCATTTTGTCGGTTTACCTCGCCGGAGTTCGAACCTATCAGACTCCATTCACAAACGCATACAGAGAGAGCGAGAGCCCTCATCGATATCGGCCCATCGTCGGTGTTTAAAGCGGATGTAACAGATCTGAAATGTATATTGTGCGATACGAACATCATAGGTTTGATCGCGTTATGCGAGCACCTGGCTACGGTACACGACAAACCTTTAGTGAAAGAGTACGGTCCGGGCATCTTCCCTTTTATGATAAGCAACGTGTTTACGTGCGCCCACTGCGGAGTGGTTTTTGACCGTTTTCCTCAATTGAACCAGCATGTTAATTTGCACTATCCTAACTACATCTGTCCGCAATGCGGGAAAGGGTTCTCTTCTGAGGGCAGGCTCAAAGCTCACGTCGTGATACATGACAAGAAGCAAACAGAGTTCAAATGTTCTGCATGCGACGACGTATTTCCTTCTACATACAGCAAACGTATGCACATGTTCAATAAGCACAACATCCTTGCATACAAGTGCTCATATTGCGATATGTCGTTTAAAGACTACAGTCAGAGAAATGCTCATATGAATACCGTTCACGACAAAACCTTCGAGTACCCTTGCAGCGCTTGTCCAAAAGTTTTAGCTACTTCGTGGAGTCGAGTGCTGCATATGCGCCGAGTACATTTGAGAGACAAGAGACATGATTGTAATGTATGCAGTAGCAGCTTCGTAACCCTACACGAGCTGACTATGCATATGCTAAAACACACGGACGGCGAGAAGAATTACAAATGCGAAGTATGCAACAAAACATATGCGAGGAAGTATACCTTGACGGAGCATATGCGGATACATAACAACGATAAGAGATTCGTGTGTCAGATCTGCAATACAGCTTTTGTGCAGAAGTGTGGTCTGAAAGTGCATATAAAGACGTACCATCCTAACGCAGAGATAGAGATAACGGTGGAGCGTGATTATAAATCTGATGGTAATAGTGAGACACATGATTTGACTGATGGTAATGTTGACATGCATGATATGACTGATGGTAACATCGACATGCCTGACATGACGTTGTCTGACCATTCTAACCCTGAACCTTTGCATCCAGAGGTTATACTTTCTGATCATCCCAATGATGACCAACCACAACTTGGCGAAATGTTATCAACCgattaa
Protein Sequence: MVIEHNVFPHKCAYCKDSFEHYFQRTEHMSTVHNKNIEYPCSVCSKIFTTSSKRASHMRNIHVRDKRFECSVCTSSFITGCALKRHMYRHTGGPVTINWTQKRRQFGDARDNAAIILQYSNVCPFGFHQNTFYCAYCSYLSPEFDRIKDHTEIHKDRSRAVNNLGSSSTFKADVTDLICELCKNDMKDINALFEHLIAVHEKPLVKELGPGIFPFLLSNGFTCADCRLNFNCFLELNRHVNVHYPNHVCSQCGKGFSSANRLRSHVNNHDKKSHKCAVCDETFPTLYGRRPTIKSGTPKHIKYGDARDNAAIILQCSNVCPFKYFRNLFYCAFCRFTSPEFEPIRLHSQTHTERARALIDIGPSSVFKADVTDLKCILCDTNIIGLIALCEHLATVHDKPLVKEYGPGIFPFMISNVFTCAHCGVVFDRFPQLNQHVNLHYPNYICPQCGKGFSSEGRLKAHVVIHDKKQTEFKCSACDDVFPSTYSKRMHMFNKHNILAYKCSYCDMSFKDYSQRNAHMNTVHDKTFEYPCSACPKVLATSWSRVLHMRRVHLRDKRHDCNVCSSSFVTLHELTMHMLKHTDGEKNYKCEVCNKTYARKYTLTEHMRIHNNDKRFVCQICNTAFVQKCGLKVHIKTYHPNAEIEITVERDYKSDGNSETHDLTDGNVDMHDMTDGNIDMPDMTLSDHSNPEPLHPEVILSDHPNDDQPQLGEMLSTD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -