Hchr009518.1
Basic Information
- Insect
- Hemistola chrysoprasaria
- Gene Symbol
- -
- Assembly
- GCA_947063395.1
- Location
- OX346717.1:3722840-3738180[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0051 0.41 11.9 1.5 1 23 28 50 28 50 0.96 2 10 0.0044 0.36 12.1 1.8 3 23 58 78 56 78 0.94 3 10 2.4e-05 0.002 19.2 3.1 1 23 84 106 84 106 0.96 4 10 2e-05 0.0016 19.5 6.0 2 23 113 134 113 134 0.97 5 10 1.2e-05 0.00096 20.2 4.1 1 23 215 237 215 237 0.97 6 10 4.4e-05 0.0036 18.4 0.1 3 23 244 264 243 264 0.98 7 10 0.00011 0.0088 17.1 7.4 1 23 318 340 318 340 0.97 8 10 0.26 21 6.5 2.0 3 21 349 367 349 368 0.95 9 10 1e-05 0.00083 20.4 6.0 1 23 436 458 436 458 0.98 10 10 6.4e-05 0.0051 17.9 5.2 1 23 464 486 464 486 0.96
Sequence Information
- Coding Sequence
- ATGAGTCCCACAATAAAGAAATGTCTCCTAGCAAGGAACAAGCTAGCCGTCATCATCAAAGGGCCGGGAGGTGACGTACAGTTCTGCTGCGTGCAGTGTACAGTCAGATCTAGTACGAAGGAGGACTTGGAGAAACATTTGCTAGTACACAACCATGAGTACAGGCATCTTTGCGGGATTTGTGGTACTggATTAAAACGCAAGGAGCATCTAGACCGTCACACTCTAGAGCACCAGCAAGTGAGGCCTCATGTCTGCGAGGTCTGCTCCAAGGCGTTCAAGAGGAAAGAGCATCTCAACATACATAAGAGCATACATTCCGGTGACAAGAACGAGGTCTGCATGCTGTGCCATAAATCGTTCTACCGCAAGGACCACCTTCAGAAGCACCTGCAAACTCACAGCAAGATGTTCTTAGAACAGAACCTATCTGAAGAACAAGATTACATTGGAATCAAGGCGGAGGTGATGGAGCTAGACGCTTCCGATCGGTTTGATGACAGCTCGCTCGACGCACAGGGATTTGAAGATATAGAAATTACTCCCGACCAAGGCTCTTACATAGAAATCACTCCCGACCATGGTTCATACATGGACACTATGGAACCAATAGAACCTGAACCGCAGAAAGAACTAAGACCATTTGCGTGCAATCTATGTGAGAAGACTTACAAGAGGAAAGACCATCTGAAACTGCACACACAGACGCATATGAAGAAGGAGAAAATCTGCTCCGAATGTGGGAGAGCGTTCGTAACGGACGAGAAGCTGCTTCAGCATATGAACATGCATCTAAACGCGTACTCCATCATGAACGGCGACGAGGACAAGACTCACCTGCAAGCCTTACTGGCCGAACATAATATCGATCCTTCATTTtTGCAGACAGACAACAGCCTCCTAGTCCCGCGTGTGTCGGTCCCCACACACACAGACGAGTCTCAGCGGCGACACGAGTGTACCATCTGTCACAGGAAGTTCAAACGTCGGCAACATCTACTTGTACACCAGAACGTTCACAACAAGACCTCGCCTAATATATGGTGCTCCAAATGTAACGAAGGATTCTTCACGAACCAAGCATTTGAGAGCCACCGCTGCATGTCCGACGAAGAACTCCTCAACATCAAGATAGAGCAGTCGCCGCCGGTCAATGACCTCGATATTAAGGTCGTTCACCCCCAGCCTGATGCCAAGAAGGAAAATGAACATCCCCAAATCAAAATACTACCGTTGGATTCTAAAGAGGACAGTACAATATACGACATACGCGACGAGAGTTCGCTCCCCTCCCCTCGCAGAGTGTACGTGTGCAAGTACTGTAACAAGCCGTTCAAACGGAAGGACCATTACAAGATACATCTACACATTCACACCGGAGTCAAGTCTTTCTTCTGTAACACTTGTGGGAAAGGGTTCTACCGCAAGGACCACCTACATAAGCACGAGTTAGTTCATGCCAAAGTGAAGCCTAAGCCAAAGAAAGCGTTGCCCGATCTGTTCCCTATCAACATATTGCCTAAGAAAAATGATACCAGAGACAACGCGCCTGCCAAAAAGGTGTACCCTGAAATAACTATACATGCCCCTTCGAACACCAAGCTCCGAGTGCCGTTGCAAATCAAAGTCCCATACCAAGTGGTGACGTCGATGGCTAACGGGGAAGAACACGCTGTCACCATCGATCCACAAGCTGATTACACTGAGATTCTATCATAA
- Protein Sequence
- MSPTIKKCLLARNKLAVIIKGPGGDVQFCCVQCTVRSSTKEDLEKHLLVHNHEYRHLCGICGTGLKRKEHLDRHTLEHQQVRPHVCEVCSKAFKRKEHLNIHKSIHSGDKNEVCMLCHKSFYRKDHLQKHLQTHSKMFLEQNLSEEQDYIGIKAEVMELDASDRFDDSSLDAQGFEDIEITPDQGSYIEITPDHGSYMDTMEPIEPEPQKELRPFACNLCEKTYKRKDHLKLHTQTHMKKEKICSECGRAFVTDEKLLQHMNMHLNAYSIMNGDEDKTHLQALLAEHNIDPSFLQTDNSLLVPRVSVPTHTDESQRRHECTICHRKFKRRQHLLVHQNVHNKTSPNIWCSKCNEGFFTNQAFESHRCMSDEELLNIKIEQSPPVNDLDIKVVHPQPDAKKENEHPQIKILPLDSKEDSTIYDIRDESSLPSPRRVYVCKYCNKPFKRKDHYKIHLHIHTGVKSFFCNTCGKGFYRKDHLHKHELVHAKVKPKPKKALPDLFPINILPKKNDTRDNAPAKKVYPEITIHAPSNTKLRVPLQIKVPYQVVTSMANGEEHAVTIDPQADYTEILS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -