Hchr024907.1
Basic Information
- Insect
- Hemistola chrysoprasaria
- Gene Symbol
- -
- Assembly
- GCA_947063395.1
- Location
- OX346735.1:1872175-1875185[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0009 0.072 14.2 5.7 1 23 138 161 138 161 0.96 2 17 0.00021 0.017 16.2 2.7 1 23 170 193 170 193 0.97 3 17 0.0017 0.13 13.4 1.1 1 23 205 228 205 228 0.97 4 17 0.0019 0.16 13.2 4.0 1 23 237 260 237 260 0.97 5 17 0.00056 0.045 14.9 2.0 1 23 272 295 272 295 0.97 6 17 8.6e-05 0.0069 17.5 0.4 2 23 328 350 327 350 0.97 7 17 0.0047 0.38 12.0 2.2 2 23 360 382 359 382 0.96 8 17 0.069 5.5 8.3 0.4 2 20 387 405 386 407 0.92 9 17 0.0028 0.23 12.7 1.6 2 21 412 431 411 434 0.94 10 17 0.00023 0.018 16.1 2.7 3 23 444 465 443 465 0.97 11 17 5.6e-05 0.0045 18.0 1.4 1 23 470 493 470 493 0.97 12 17 6.5e-05 0.0052 17.8 2.9 1 23 505 528 505 528 0.98 13 17 0.041 3.3 9.0 0.5 1 23 548 571 548 571 0.92 14 17 0.058 4.6 8.6 2.5 2 23 604 625 603 625 0.97 15 17 4.5 3.6e+02 2.6 0.9 5 23 637 655 633 655 0.87 16 17 0.0027 0.22 12.8 0.2 1 23 692 714 692 714 0.97 17 17 0.083 6.7 8.1 1.9 1 23 720 743 720 743 0.97
Sequence Information
- Coding Sequence
- atgaatgaGAAAGATAGAAAAGACCCCACCACTTTCCTCCCACAAGAGGAGATGTGCTATGAAatcaaaaagaagaagaaaaagaaaaaaaaacaagaggACCCATTCAAGGATGTGGAACTAATCCAGACTATAGTTAGAGAACCTGATATTACGGCTTTGGATCCTGATATTGGACCTCTAATTGACCCTGAAGTCACTATCAAGGTTGAGAATATTCAGGTTGATTTGGACTTGAATGATTTTATGTACAATGACTATGACACTATAAATGACGATACTGAGCACGAACCAATAGTCAAACTAGAAGAACAAAACAGAGACGCTGTTCTTTTGACCTTCGAGAGTGTAGTCATTGACAAAATACCCTGCGAAGTAAAACCTGAGGCAGTTGAGTCCGAAACTACCAACCACTTCTGTAAAGTTTGCCATTTAGTCTTCAAAAATCCAAAAACCTTATACATACATCAGAGAAAGAAGCACAAAAAATTTCAGTCGTTCTGTGTGCATGTTTGTGACCATTGTGGCATGTCATACGAATCCAAAAACAGTTTGGTTGTTCACTTGAAGAGAAAACATGGACCTGATGCAAATaaagatgataataatgaacATATGTGCGATATATGTGCATTAGTCTTTAAAGGATCAGCTAGACTTCGTATGCATATGCGTAGAAAGCATGGTTCTTACGTAGACAGATTTAAACATGTCTGCAACGATTGCGGATTGACATATGATAAAGAATGTAGCTTAACTGTCCATAGAAGACGGAAGCATAGCAACAAACAACCACCGAAGTCGAGTCAGTGGTTTACTTGCCCATTTTGCTCAAGGTTATTTCCTAGAAGAGAAAGTTACTCACGGCACATTCAAAGAAAGCACAAAGTTGATGAGGATGGCAATGAGAATGAAAACGGAATGCCTGAGTCGCAGGAAATATTAAAGAAACTGATTAAAGACCAAAAGTCACAGGAGGTCACTTGCAGCATCTGTCCTTCAGTTTTCTCATCGCCCATGTACTTAAAGCTACATATGAAAAGGAAGCATAATGTCATGTCTGAAGATTTTAGACTGAAGTGTAAGTTTTGCAATCTTTCGTATGATAAAGTTGAAAGTTTGAAACGTCATGTCAAAAGGAAGCATGATACAGGAACGTACTGTGAAGTTTGCAGTAAACAATTTCCTTCAAGGGAAATGTTCTTAGAACACACACATATTAAAGTTGTTAAAGAGTGTAATATGTGTGGACTTATATTTGCAAGTCAACGCGGTTTGTCCAAGCACTTGAGGTGTACGCACAAAATAGCTTCAGACAAAACGGTCTTTTGCAATGTTTGCAAAGAGGGTTTCAATCAAAAACATCAACTAAAAGCTCACTACAAGAGGGTACATTTGAAAGTTACCTACACATGTCCAATTTGTACAAAACAGTTACGCTCAAAGGAAAGTTACAAACGGCATCTAATGATCAAACATCCAGAAAGCTACGTAGACGATACAGTAATGccatataaatgtgaaaaatgtAGTCAGAATTTTATTACCGAATTTGATTTGTGTAGGCATATTAATACGGAGCACAGAGAAAGCTTAGATATTTTGATTAAAGAGGAAAACAAAGAGGTTGTTAAAGATTTGTTCCAGTGCACGAAATGCTCAGATGAATATCCCACGTGGGAACAACTAAGAGAGCATTTCGAGCAAATGCATCATTTGATTGAAGAAACACAGTGTCAAAAGTGTGGGGATCTCATGCCTACAACTGAGTTAATGCAGCATATGAAGAGGCACAAAGAGGAAGAGATGACATGCAAGTATTGCGAGTTTAATACGAAAAGTCGGCTTAGCATGACACAGCATATGCTCAGGCATACGAATGCTCAAACCATGCTATGCGGTTTTAACGGTTGTAAATACAAAACATTCTATGAAGATGCCATGGCTAAGCACAAAAGGAGGCATGTAGATAATTTGGGACTTAAATTGCAATGCGCTAGCTGTCCATTCCAAACAATGaacaaatacatattaaaatatcatgaaGAAGCACATTCTTCGGgcaaaaagaaatatatatgtGATAAATGTGACTATGCCACTACATTGCCAGCTAATTTAATTcaacataaatataaacattcAACGGAAAAACGGTTTAAATGTGAAGTCTGTCCTTTTGCAACGAAATACAATACTTCATTACGTTTTCATGTGAGAAAGAAACACTGTGATCTTCCTTCTAAAACATAG
- Protein Sequence
- MNEKDRKDPTTFLPQEEMCYEIKKKKKKKKKQEDPFKDVELIQTIVREPDITALDPDIGPLIDPEVTIKVENIQVDLDLNDFMYNDYDTINDDTEHEPIVKLEEQNRDAVLLTFESVVIDKIPCEVKPEAVESETTNHFCKVCHLVFKNPKTLYIHQRKKHKKFQSFCVHVCDHCGMSYESKNSLVVHLKRKHGPDANKDDNNEHMCDICALVFKGSARLRMHMRRKHGSYVDRFKHVCNDCGLTYDKECSLTVHRRRKHSNKQPPKSSQWFTCPFCSRLFPRRESYSRHIQRKHKVDEDGNENENGMPESQEILKKLIKDQKSQEVTCSICPSVFSSPMYLKLHMKRKHNVMSEDFRLKCKFCNLSYDKVESLKRHVKRKHDTGTYCEVCSKQFPSREMFLEHTHIKVVKECNMCGLIFASQRGLSKHLRCTHKIASDKTVFCNVCKEGFNQKHQLKAHYKRVHLKVTYTCPICTKQLRSKESYKRHLMIKHPESYVDDTVMPYKCEKCSQNFITEFDLCRHINTEHRESLDILIKEENKEVVKDLFQCTKCSDEYPTWEQLREHFEQMHHLIEETQCQKCGDLMPTTELMQHMKRHKEEEMTCKYCEFNTKSRLSMTQHMLRHTNAQTMLCGFNGCKYKTFYEDAMAKHKRRHVDNLGLKLQCASCPFQTMNKYILKYHEEAHSSGKKKYICDKCDYATTLPANLIQHKYKHSTEKRFKCEVCPFATKYNTSLRFHVRKKHCDLPSKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -