Hchr001955.1
Basic Information
- Insect
- Hemistola chrysoprasaria
- Gene Symbol
- -
- Assembly
- GCA_947063395.1
- Location
- OX346710.1:2723138-2728922[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.026 2.1 9.6 1.4 1 23 163 185 163 185 0.96 2 9 4.2e-05 0.0034 18.4 1.6 2 23 193 215 192 215 0.94 3 9 1.6e-06 0.00013 22.9 4.4 2 23 224 245 223 245 0.97 4 9 1.9e-06 0.00016 22.6 0.1 2 23 254 275 253 275 0.96 5 9 0.0015 0.12 13.5 5.1 1 23 283 306 283 306 0.97 6 9 2.1e-06 0.00017 22.5 0.6 1 23 311 333 311 333 0.98 7 9 4.4e-05 0.0036 18.4 4.5 1 23 339 361 339 361 0.98 8 9 3.1e-06 0.00025 22.0 0.8 1 23 367 389 367 389 0.98 9 9 7.2e-06 0.00058 20.8 1.7 1 23 395 417 395 417 0.98
Sequence Information
- Coding Sequence
- ATGAACCAATTGTGTAGAGCATGCTTAGTTGCGAAGGAATCTTTTAACTACACTTTATTTGAGAACTTATCTGCAGACGTTTACTCCTATTGCACTTCAGTTGAGGTCTGTAAGGACGATGAACTACCAAAGACTGTGTGTAACACATGTCACGATTTATTGGAAAAATACTCTGATTTCAAAAGGGCATGTATTCAAGCACAGAACACACTGGTGTTCCAGAGTAAAATAAAAGTTTCAAAAGAGGACTCTGATTCCATCAAATGCGAAGTTGATAATAAATGCGAAGTACTGGTGGATGTGGTCAATGATCTTAGAGATAATGAAAATTCAATTTGTGAAGATGCCTTTGTCCCtgatgaaataaatgaagaggaATGCTTTTATCATGAAAGTAAGAAGAAAATTGGTACTGAGAGAAAAGCACATGTAAAgatgaaaaaagaaataaaacatgTTGTGAAGAAAAAATCAAAAGTCTTTGAGTATGTTTGTGAAATATGCAAAAGCAAGTTCAAATACAAGGAGAGATATGAAGTACATAAACTAGAACATCAAGGACAAACTGTGAATAAAACCTGCACAACATGCAAGAAAACGTTCATGACATGGAGCGGGCTGCAGCGCCACACCGACAGCGAGCACAAGGTGGTGAAAATGAACACTCTTCGCTGTAAGGATTGCGGGAAAGTTTTCAAGAACAAACACACGCTCAAACTGCACACCAAGATGCATTCTATGCCTGAAGTGAACTTGAGCGTTTGTGATGTCTGTGGGAAGAGTTTCTCTAGTCCTGTCACCTTGAAATCTCACCTAGAAAGCCACAACGAGAACCGAGCAAGAGACTTCCCCTGTGAGCACTGCGGAAAGAAATTCTTCACAAAATACATCCTGCATTCACACATTAAAAGACTACACACTGGCCAACGGTACATCTGCCAACTATGTGAATACCCCTTCACAGATAAATATAATCTAAGCAAACATATCCTCACACATCAAGGTATTAAAGAACATAAGTGCGATATATGCGAGAAATTCTTTTCTACTCATTCTACACTTGTTATACACAAAAGAATACATTCCGGGGAAAGGCCTTTTCCATGTGGATATTGTACAAAGGCATTTAGTTCTAAGAATAGGCTGATTGTTCATCAGAGGACTCATACTGGTGAGAGGCCTCATAGATGTCCAATTTGTAATTTGGCGTTCACGCAACTTGGTACTATGAAGAGGCATTTGAAAACTCATAATAAAGCTCCTACGGTTGTAATtgCAGCAAGTGGCAAGCAGCCGCTTGAGAGTGGCCGCGGTCATCAGgtggggagacaaccgggagaagtgcttccaacagttccaccgcccgtcgaggacgaatCCAAGATATTTCATCGAgggctcgaccccgatgcggacctccCCGATAAGGATGCTAGAACCTCTTGGTGGCGCCCTCCGAAGACCGTGAAAACACACGGCCTCGGTTTTATTGAGCGCCACCCTGAGTCCCAATCTCCCTATACTTTGCACCACCTctcccaccgccacggtggcaaatCGAGCAGTCTCTTCAGATGTTCCCCCTGGCGCCATTACAAGCGCGTCTGCATATCACGCTGGCCCCCGGGGGGAGATCACGCAACACCCAGTCGAATCCGATGTTTCACAGAAGCGGTCCGAGAACCGagccctgtggaacaccgcacgacatctcgCCGCAGCATCCGCCCCTCCGACGCGTTTGACCGCGTTAATTGTCGGACCTATCCACTCGGAAGCCGAACTGTCGGTCGGACAAGTCTCTCCAAGGTGCTTGGCGAGACGGCAAGCCACCACTCGCTAAAACAGCTTGTCCACCTCGTCAAGCGATGGGGCGAAATGCTGCGGGAGAGTCTGCAGCGCGCCCCTCCGTTTTGA
- Protein Sequence
- MNQLCRACLVAKESFNYTLFENLSADVYSYCTSVEVCKDDELPKTVCNTCHDLLEKYSDFKRACIQAQNTLVFQSKIKVSKEDSDSIKCEVDNKCEVLVDVVNDLRDNENSICEDAFVPDEINEEECFYHESKKKIGTERKAHVKMKKEIKHVVKKKSKVFEYVCEICKSKFKYKERYEVHKLEHQGQTVNKTCTTCKKTFMTWSGLQRHTDSEHKVVKMNTLRCKDCGKVFKNKHTLKLHTKMHSMPEVNLSVCDVCGKSFSSPVTLKSHLESHNENRARDFPCEHCGKKFFTKYILHSHIKRLHTGQRYICQLCEYPFTDKYNLSKHILTHQGIKEHKCDICEKFFSTHSTLVIHKRIHSGERPFPCGYCTKAFSSKNRLIVHQRTHTGERPHRCPICNLAFTQLGTMKRHLKTHNKAPTVVIAASGKQPLESGRGHQVGRQPGEVLPTVPPPVEDESKIFHRGLDPDADLPDKDARTSWWRPPKTVKTHGLGFIERHPESQSPYTLHHLSHRHGGKSSSLFRCSPWRHYKRVCISRWPPGGDHATPSRIRCFTEAVREPSPVEHRTTSRRSIRPSDAFDRVNCRTYPLGSRTVGRTSLSKVLGETASHHSLKQLVHLVKRWGEMLRESLQRAPPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -