Hchr026829.1
Basic Information
- Insect
- Hemistola chrysoprasaria
- Gene Symbol
- -
- Assembly
- GCA_947063395.1
- Location
- OX346738.1:345136-346641[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.003 0.24 12.6 1.8 2 23 76 98 75 98 0.93 2 13 0.006 0.48 11.7 0.7 2 23 105 127 104 127 0.92 3 13 0.00088 0.071 14.3 2.0 2 23 134 156 133 156 0.93 4 13 6e-06 0.00048 21.1 1.1 2 23 164 186 163 186 0.96 5 13 9.3e-06 0.00075 20.5 2.1 1 23 192 215 192 215 0.95 6 13 0.0094 0.75 11.1 0.9 1 23 222 245 222 245 0.97 7 13 9.5e-07 7.6e-05 23.6 2.2 2 23 252 274 252 274 0.96 8 13 0.00088 0.071 14.3 0.4 3 23 289 310 287 310 0.94 9 13 6.9e-05 0.0056 17.8 0.6 3 23 319 340 318 340 0.95 10 13 3.3e-06 0.00027 21.9 0.5 2 23 346 368 346 368 0.97 11 13 0.055 4.4 8.6 2.6 3 23 377 398 376 398 0.92 12 13 9.8e-07 7.9e-05 23.6 3.6 1 23 403 425 403 425 0.98 13 13 0.0037 0.29 12.3 3.1 1 23 431 454 431 454 0.96
Sequence Information
- Coding Sequence
- ATGGAAGTGACAGTAAAAGCTGAGCCACTACTGATTGAATTTAAAGAGGAACCAACAGATATTAAGACGGAGCCTGAAGAAATAAAACCAGAGTACAAAACCGAATCGATATTAATCAAACAGGAAATACCAGTATCTGTAGAGATACCTTCCAGTTCACAATCAACATCAGATGCGAGTGAAATAACAGGAAAGGTTTATGAAAATGGAAAAGTAAACAGAATAGAATGCGTTCATTGCAAGAAAACATACAAGAACAGAGCAATTTTAAAGAAACACATTCAATTCGTACATACTGAAGATAGTACGGTAGAATGCAGCGAATGTTTTAGATCTTTCAAGTCCCTCCTCTATTTGCGGTCTCACTTTGATTCGGTACATGCAAAAATAGAAGAAGTCCAATGTAGCCACTGTGAAAAGACTTTTATGAACAAAAAGAAACTTGGCAATCATATTTACTACGCGCACCCACATCAAGATAAAGAAAGCACTTGTAATGTTTgctttaaaacttataaaagtgcaaataatttaaaaatccatATGAGGCAAGTACATCCTGTGGGAGACCCTCATCCTTGTCCATTTTGCTACAAAACCTTCAAAACGGAAAGCTTACTGCAGCGACATACGAAATGGGCACATCCGAACGACGGTCTAATCTACAAATGTCACCAATGTCAAAAAATACTACCATCAATAGAAGGGTACAGACTTCATATCAAAAACGTCCATTCGGGGATAAATCGTGCAACCTGCAATATATGCAAACGCTCCTTTAAAACCAAGAAATTGTTAGAAAGACATATTAGAAACATTCACACAGCGAACAAAGAAAAGGTGAATACGGAGAGCGAAGTGATATGCCAGTTTTGCGAGAAGATGTTTAATAACAACACTTCTTTGTATTGGCACGTAGAGAAATACCACACTCAGAATATACCAAATAAATTCTGTACGATATGTCAAAAGGAATTCTCCGATAATGCATCGATGCAACGGCATCTAACAAGTGTTCATTCCTTGGAAACAGCAACATGTAGCATATGCTCAAAAGAGTTCAAATCTGCGATAAACTTGCAAAATCACATCCGTATAACACATGCCCCTCCAGAAGCAACGCAATTCTGTGAAGTCTGTCAGAAAACATTCAAATGCCCGATGCATTTACGTATGCACGTTTTAGCCGTACACTCTGAAGGTGAATTCTCATGTGACGTTTGCCAAAAGAAGTTTACTTCAAGAAAGTATTTAAACAAACACATAAAAACTCACAACGAAGCAAGAGACTACGAATGTGATGTCTgccataaaatgtataaatcgATTCATGCGGTCAATAAGCATAAGAAACTTGTGCATAACGGTATTAAATGCactatttgtaatataaaacaGACTAAGTATGAAGAACATATGCGGAAATGTCATCCCGAAGTGAATTTGAATGATAGTCAAGCAAATAGTTTCGAGGTTGAGGTGAAAGTTGAAGTCACAGAAGACTAA
- Protein Sequence
- MEVTVKAEPLLIEFKEEPTDIKTEPEEIKPEYKTESILIKQEIPVSVEIPSSSQSTSDASEITGKVYENGKVNRIECVHCKKTYKNRAILKKHIQFVHTEDSTVECSECFRSFKSLLYLRSHFDSVHAKIEEVQCSHCEKTFMNKKKLGNHIYYAHPHQDKESTCNVCFKTYKSANNLKIHMRQVHPVGDPHPCPFCYKTFKTESLLQRHTKWAHPNDGLIYKCHQCQKILPSIEGYRLHIKNVHSGINRATCNICKRSFKTKKLLERHIRNIHTANKEKVNTESEVICQFCEKMFNNNTSLYWHVEKYHTQNIPNKFCTICQKEFSDNASMQRHLTSVHSLETATCSICSKEFKSAINLQNHIRITHAPPEATQFCEVCQKTFKCPMHLRMHVLAVHSEGEFSCDVCQKKFTSRKYLNKHIKTHNEARDYECDVCHKMYKSIHAVNKHKKLVHNGIKCTICNIKQTKYEEHMRKCHPEVNLNDSQANSFEVEVKVEVTED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -