Hchr025348.1
Basic Information
- Insect
- Hemistola chrysoprasaria
- Gene Symbol
- ZNF296
- Assembly
- GCA_947063395.1
- Location
- OX346736.1:292798-311721[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.046 3.7 8.9 0.0 3 23 127 147 125 147 0.97 2 14 4.5e-05 0.0036 18.4 1.1 1 23 231 253 231 253 0.99 3 14 0.00014 0.011 16.8 0.7 1 23 259 282 259 282 0.96 4 14 0.1 8.1 7.8 4.9 1 23 287 310 287 310 0.93 5 14 6e-05 0.0048 18.0 0.5 2 23 541 561 540 561 0.97 6 14 0.00031 0.025 15.7 1.3 1 23 567 589 567 589 0.98 7 14 0.046 3.7 8.9 2.6 3 22 642 661 641 661 0.97 8 14 0.059 4.7 8.5 6.1 1 23 686 708 686 709 0.94 9 14 6.6e-06 0.00053 21.0 2.9 1 23 716 738 716 738 0.98 10 14 0.01 0.81 11.0 5.0 1 23 747 769 747 769 0.99 11 14 0.00025 0.02 16.0 0.7 3 23 815 835 814 835 0.98 12 14 0.011 0.85 10.9 5.6 1 23 852 874 852 874 0.97 13 14 4.7e-07 3.8e-05 24.6 0.8 1 23 880 902 880 902 0.98 14 14 5.9e-07 4.8e-05 24.3 3.1 1 23 908 931 908 931 0.98
Sequence Information
- Coding Sequence
- ATGATGGATATGGACCCCTTGAGCTACGAGGCTCAATACGAATACTCCTTACAGAACCCGTACTACCCACCCGTAACATATCCATACAAAGATACGTATCAACCAGAGCCTACCGTATCAAAACAGCCTAACACATCAAAACCTCCAGCGAATGTATCcaaaaatgtaccaaatataGATACGCCAATGCCAAAAGCAGCCCAGAATACTACAAACAAAATTACGAACCAAGTAAATGATCCAAAAAACGATCAAGATACAGTACAAGAAGATATCAAACCAGATATAACGAAAACCGACAAAAAGAAGAAACTAAAAGGAAGAACCAGCAGTTACTGGAACAAAAAGATTTCCGACAAAGATTTTGCGTTCTACGGATGCTCGGTTTGCGACATCGCTTACAAAGACTTAATAGAGTTGGACCAGCATGTGATGATTCACACAAACAGAATGACTACCTATGAAATACGTCAACAGAATTTAAAAAAACGCAAGCGTTTAAAAAAGCTtaagaaaaaacaaaagaaagaaaagatTAAAGATGAATTTGATGTTGAAATTAAACCCGAAGACGGGTATATTGGTATGGAAAAAGCTGGCGATGTGATCAAAGATAAAAAAGACATCAAAAAAgatgtagaaaataataaaaacaagccggaaaataaaaatggtcACAGATTCAATGTTTATAAATGTTTTGGATGTAACAAGGAATTTGCTCTAAGTTATTATTTGAGAATTCATGTCAGATCTCACActgATGAGAAGCCCTACACATGTAATGAATGTGGGCAATCGTTTATAACAGCGAGCAAACGCGCTCGTCACAACAAGAGGATTCATCTGTCTATCCGTCACCAATGCAGGATATGCTTTAAATTCTTCAATAGgttCGATTTTCTAGTTAAACATTTCGACAAAATTCATGCGGATGACAAGTTGGAGGGTGAACCGTATGATTACAACACCATATTGCCATATCTAAAAGAGCTGGAACAGCAAATGATGGTCGATAAAGCGGAGCCAAAAACAGAAGACCCGTCAGATGAATCCGTGCCAGTTGGCAACACAGACCAAAATGTAACGGGCAATGTAgctaaagaagaagaagatactAAAGAGAAAAAACAAATTGAAGTTAAGAAGGCAACTAAAGAACCAATGGTGGAATGCAAAGAAATCAAACCAGACCCCGATGAACCAATTGGTTCCACAACATTATATGTACCAGAGCAATACGAATCCGATATGGATATTAAACAAGAGGTCGAAGAACCCGAAGAGGTCACTGACCCCGAGGTCAATAACCTTGAGGTCAGTGACCTTCAGGTCAACTACTCTCATGACAATAACACTGAAATCAATGACAAAGTTGATTCCTTTGAGGGCAACGCACCTAAGGTCAATTCCCCTAAGGTCAATTCCCCCGAGGTCAGTGACATGGGTGAAAAGTTTGATGATCATTTCGGTGATGACGCGAcagcagatgatgatgatgatatgaagGAGGAGAGGGCATCAAACTCTGACCCAGAGTACTTCCCATCTGACTCGTGCTCCCGTCCCCCCGACTCACCTTCCAAAACGGCGGCGTTACCTAAACCGGGGAAGGTAACGACATGTCCCGTCTGTAACAAATCTCTGAACAAGGGTTATTTGACGGTACACATGAGGACGCATACTGGTGAAAAGCCATACATATGTTACATTTGCAACAGAGGCTTTATAACTGCGAGTAAAATGCATAGACACGTTCTAACGCATAATGAAACATGGGAAGaTAAATTTGGAGGCGAAGTTGATGAAAACGAGAAGATTACTCGGAAATCAGAAGTAGACAAGGCAAAAGCTAAGATATTGAAAAAACCAAAGAAAACAGCCGAAAAAAAAGATAAATCTCACAAAACGAGGCCGCATGGATGCGAATACTGTCATAAGAGatTCCTCCACCCGGAGACCCTGCACGTGCACCGGCGCAccggcgggggcggcgggggcggcgggggcgccGCGCTGCTGCTGCACGAGGGCTCGCACGCCGGACCCAAGCCCTACCTCTGCACCCTCTGCGGGAACTGCTACAAGAAGAAGGAGACCTTGGTGTACCACAGGAAGTCTCACCACTCGCCCGACGTGCAGACGTTCGTTTGTGATATTTGCTCTAAGAAATTCAGATCGCAAACTAAGTTTaagCGGCACATAATGTCTCACTCGGTGGAGAAGTACACCCTGAAGTACGAGTGTCCGGTGTGCGCGCACATGTTCCACACGAGGTACCACGTGCAGATGCACCTCAACACGCACATGAAGGAGGGCCTCATCCTAGAAGAGAACAGAAGCGCGGTCCTCGCTATGGTTCTGCAAAACGCTCGCAAAATACCAAAATCTACCGAAAATTTACCAGAGACTAATATACCGGCAGACGAACGATCCAGAATATGTAATATTTGTGGAGAGATCTTCCAACATTTCTACTATTTGGAGGAACATTTGAAGACTCACGGATCTAAGATAGCCATCGAGGATATTGACAAGGAAGAGGAGAAGAAGTATACTTGCCAGGTCTGCTCAAAGTCCTTCAAGCTCCACTATTATCTGAAACTGCACAGTTTCACGCACACAAAGGAGAAACCCTTCATATGCCAGCAATGCGGGAAAGGGTTCATTACGAAGGGCAAGCTGAAGAGACACATGGAGACACACCAAGGACTGAAAAAGTATCAATGTCATATATGTTACAAGTTCTTCACGAGACCCAGTTATTTGAGAATCCATGTGAGGACTATCCACGGGACGCAGGATTATAATTTTAGGGATTATGGTGTTGGTGTCCCTATAGGGGCTATAGTGAATAGTTAG
- Protein Sequence
- MMDMDPLSYEAQYEYSLQNPYYPPVTYPYKDTYQPEPTVSKQPNTSKPPANVSKNVPNIDTPMPKAAQNTTNKITNQVNDPKNDQDTVQEDIKPDITKTDKKKKLKGRTSSYWNKKISDKDFAFYGCSVCDIAYKDLIELDQHVMIHTNRMTTYEIRQQNLKKRKRLKKLKKKQKKEKIKDEFDVEIKPEDGYIGMEKAGDVIKDKKDIKKDVENNKNKPENKNGHRFNVYKCFGCNKEFALSYYLRIHVRSHTDEKPYTCNECGQSFITASKRARHNKRIHLSIRHQCRICFKFFNRFDFLVKHFDKIHADDKLEGEPYDYNTILPYLKELEQQMMVDKAEPKTEDPSDESVPVGNTDQNVTGNVAKEEEDTKEKKQIEVKKATKEPMVECKEIKPDPDEPIGSTTLYVPEQYESDMDIKQEVEEPEEVTDPEVNNLEVSDLQVNYSHDNNTEINDKVDSFEGNAPKVNSPKVNSPEVSDMGEKFDDHFGDDATADDDDDMKEERASNSDPEYFPSDSCSRPPDSPSKTAALPKPGKVTTCPVCNKSLNKGYLTVHMRTHTGEKPYICYICNRGFITASKMHRHVLTHNETWEDKFGGEVDENEKITRKSEVDKAKAKILKKPKKTAEKKDKSHKTRPHGCEYCHKRFLHPETLHVHRRTGGGGGGGGGAALLLHEGSHAGPKPYLCTLCGNCYKKKETLVYHRKSHHSPDVQTFVCDICSKKFRSQTKFKRHIMSHSVEKYTLKYECPVCAHMFHTRYHVQMHLNTHMKEGLILEENRSAVLAMVLQNARKIPKSTENLPETNIPADERSRICNICGEIFQHFYYLEEHLKTHGSKIAIEDIDKEEEKKYTCQVCSKSFKLHYYLKLHSFTHTKEKPFICQQCGKGFITKGKLKRHMETHQGLKKYQCHICYKFFTRPSYLRIHVRTIHGTQDYNFRDYGVGVPIGAIVNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -