Hchr023575.1
Basic Information
- Insect
- Hemistola chrysoprasaria
- Gene Symbol
- ZNF711_1
- Assembly
- GCA_947063395.1
- Location
- OX346733.1:3409689-3411686[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.016 1.3 10.3 0.1 5 23 291 309 290 309 0.96 2 12 0.012 0.98 10.7 0.2 3 23 317 337 315 337 0.94 3 12 0.0062 0.5 11.6 0.3 2 23 345 366 344 366 0.94 4 12 1.4e-07 1.1e-05 26.2 0.6 2 23 372 393 372 393 0.98 5 12 0.0033 0.27 12.5 3.9 1 23 399 421 399 421 0.98 6 12 0.0021 0.17 13.1 0.3 2 20 426 444 425 446 0.92 7 12 0.00012 0.0099 17.0 0.1 1 23 476 499 476 499 0.97 8 12 0.00019 0.015 16.4 0.7 3 23 508 528 507 528 0.99 9 12 1.6e-05 0.0013 19.7 0.3 1 23 537 559 537 559 0.98 10 12 2.1e-05 0.0017 19.4 3.5 1 23 565 587 565 587 0.98 11 12 0.0027 0.22 12.7 0.3 3 23 595 615 593 615 0.98 12 12 1.8e-05 0.0014 19.6 1.1 1 23 621 644 621 644 0.95
Sequence Information
- Coding Sequence
- ATGGACTCTTTACTGAAGTTACAACTGAACAACCTTCTCAAACAATGTAGCGAAAATGTCAACAGGGACAGTACAGACAAAAATGATGAAGATTTTGCCAATAATCCTATGAAACAgctcgaagcagtcattaaaaCGGAACCCATGGACAGCGATGACGATTTCTACTACGTACTTGTCATTGATGACccaaaagaaaaagaaaacacACCTCCTGAAGTCAAAATTAAGCCTGAAAACCCTGATGTAGAGATAAAACTGAGTAAAGATAGCCAAGAAAGGAAATGTGACGTGAATGAGTTCCAGGAAGAGTCTGTAGACAATAATTTAGAGATCAACGAATACCAAGAACCGGAAACGCCTGAGGAAATTCTTCCTACTATTGAGGAACCTGAGCCTCATAATCCAACAGATTTTGAGAGCACAATGGATTCATACATGATTACGAATAACATACCAATCAATGTACCTGCAACCATTCTCCAAAATGAAGAGGATAGTCAGGATGACCAAGACGAGAACTCTATGGACGTCCAAATCGTCAAAGACCCATGTGACACTTACCAGATTGATGATAACTCACAGGACATAGAAGAGGAAATCTCCAATCAAAacttgattaaaatattaacaactACCGCTGAAGATGGAACAATACTTCTGAAAGCTGGCGGAATGGTGCAGTATTTGACTGATGGTCAATTAATCGTGAACGAAGATACTGGGGATGAGATTTCTCCCGAAGTAATCTTATGCGAGGGAGATGATTCCCAATTTCAAATCGTAAAATATGATGGGTCGGAATTAGTAATTGAATATGCAGATGAAGGTTCATTACCAACGGTTTTTCAACAGTCAGCATACTTCTGTGAATGCGGAGAACAGTTTGACGATGCAGAAGAGTACCAACAGCatcaaaaacaacataatcCAGGCGATGATCATTTATGCAATTTATGCGGCAAAGGGTTTGAATCGGCTGAGATTTTAACTGGCCATATGCTCTTGCATAACATAACTAGTACATTAATACAATGTCCCTTCTGTGATCAAGTCGTAAAGAGAAGCTCTTTAACTCAACATATAAAATacggacataataatattaagccgCAATGCGATCTCTGTAACAAAACATTTGCGAATCCAAACAATTTGAAACGTCACATGATGATTCACAGCGGAGTAAAAGAATTCGAATGTGATGTCTGTTCTAAGCGCTTTCACCAAAAAATCACAATGCAAACTCACAAACTGACACATATGAACCCATTATCGTGTTGGCAATGCGATACATCCTTCAAAGATAAGGAATCTTatgaaaatcataaaattaacgGTGAATGCCCGAACAATAAGGCAAAAGAAGAACTAATGAAAACTGTGAAACAAGAGATTACAACTAATTTGGGAAAGCTGTTGGGTTACGCTTGTTCGTTATGCAAGAAAATGTTTTCAATAGAAGCCGCTTTAGAACGTCATATAGAAACTACACATATTGTCGACCCAGCAGAGATTCTTTGCTCGGAATGTGGTGAAGTATGCTCGTCGAAGAAAGAAATGCAAGCCCATGTAATGACTCATGAAAGacgtaaaataattaaaagattTGAGTGTAGCATTTGCGGTAAAGGGTGCTCAAGTCAAGCTATGTTGATCATGCATGAACGAGTCCACACAAATGAAAGACCGTTCCCTTGTCAGTTATGCCCGCTTAAATTTAAAACCAAAACTCATTTACGAACACACCAGCTCACTCATACGAGAGAAAAGAAGTTTGGTTGTTCGGTTTGTATGAAGTTTTTCGCATTAAAAGGTAACTTAGTAGTACATTTAAGGACGCATACAGGAGAAAGGCCGTATGTTTGCTCAATCTGTGGCGAAGCGTTCATAGACTCGAAGTATCTAAAGAAACACAAATTTAAAAAGCATGCTATCGATAATGTGGCTTGGAATCAGTACTTATTGAAGATTAAAGTTGATGAAAATGATGAGTGA
- Protein Sequence
- MDSLLKLQLNNLLKQCSENVNRDSTDKNDEDFANNPMKQLEAVIKTEPMDSDDDFYYVLVIDDPKEKENTPPEVKIKPENPDVEIKLSKDSQERKCDVNEFQEESVDNNLEINEYQEPETPEEILPTIEEPEPHNPTDFESTMDSYMITNNIPINVPATILQNEEDSQDDQDENSMDVQIVKDPCDTYQIDDNSQDIEEEISNQNLIKILTTTAEDGTILLKAGGMVQYLTDGQLIVNEDTGDEISPEVILCEGDDSQFQIVKYDGSELVIEYADEGSLPTVFQQSAYFCECGEQFDDAEEYQQHQKQHNPGDDHLCNLCGKGFESAEILTGHMLLHNITSTLIQCPFCDQVVKRSSLTQHIKYGHNNIKPQCDLCNKTFANPNNLKRHMMIHSGVKEFECDVCSKRFHQKITMQTHKLTHMNPLSCWQCDTSFKDKESYENHKINGECPNNKAKEELMKTVKQEITTNLGKLLGYACSLCKKMFSIEAALERHIETTHIVDPAEILCSECGEVCSSKKEMQAHVMTHERRKIIKRFECSICGKGCSSQAMLIMHERVHTNERPFPCQLCPLKFKTKTHLRTHQLTHTREKKFGCSVCMKFFALKGNLVVHLRTHTGERPYVCSICGEAFIDSKYLKKHKFKKHAIDNVAWNQYLLKIKVDENDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -