Hchr005913.2
Basic Information
- Insect
- Hemistola chrysoprasaria
- Gene Symbol
- -
- Assembly
- GCA_947063395.1
- Location
- OX346713.1:12313667-12322877[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.012 0.94 10.7 2.0 3 23 687 708 686 708 0.96 2 21 8.1 6.5e+02 1.8 1.1 4 23 1054 1075 1052 1075 0.84 3 21 0.032 2.6 9.4 0.6 1 22 1080 1101 1080 1101 0.95 4 21 0.015 1.2 10.4 0.9 2 21 1177 1196 1176 1197 0.95 5 21 0.093 7.5 7.9 1.2 3 23 1248 1269 1246 1269 0.94 6 21 0.0015 0.12 13.5 0.6 1 23 1275 1298 1275 1298 0.95 7 21 0.14 11 7.3 0.0 1 23 1322 1345 1322 1345 0.90 8 21 0.0062 0.5 11.6 3.5 1 23 1350 1372 1350 1372 0.97 9 21 0.022 1.8 9.9 0.3 1 23 1378 1401 1378 1401 0.95 10 21 0.0032 0.26 12.5 0.9 1 23 1414 1436 1414 1436 0.97 11 21 0.0002 0.016 16.3 1.8 1 23 1486 1509 1486 1509 0.97 12 21 0.0021 0.17 13.1 1.4 1 23 1572 1595 1572 1595 0.96 13 21 0.0023 0.18 13.0 1.5 2 23 1621 1643 1620 1643 0.95 14 21 0.046 3.7 8.9 0.1 2 23 1649 1671 1648 1671 0.94 15 21 0.011 0.9 10.8 0.2 1 21 1715 1735 1715 1736 0.95 16 21 0.0014 0.11 13.7 0.6 1 23 1746 1768 1746 1768 0.93 17 21 0.00013 0.01 16.9 0.3 2 23 1857 1879 1857 1879 0.93 18 21 8.6e-07 6.9e-05 23.8 1.3 3 23 1886 1906 1885 1906 0.98 19 21 0.065 5.2 8.4 0.8 1 23 1924 1947 1924 1947 0.94 20 21 0.015 1.2 10.4 1.0 1 23 1997 2020 1997 2020 0.95 21 21 0.00029 0.023 15.8 0.4 1 23 2028 2051 2028 2051 0.96
Sequence Information
- Coding Sequence
- ATGAATGTGAACTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAATTACTGCCGATTTTTCCTACCACCAGTTCGGATGACTCGGAACCTCCCGTCCTTGCCTCGAAAATCAACGATTGCGTGTCAGTTCAGATAAACGAAAATGACGATCTGCCGACAAATGTCTGCAGGAAATGCATGGACAATGTCAACAACTGGCATATATTCAAGACTGTATGTGAAAAGACACAAAACAAACTACAGTCTCTGATTAAAAAGGATGGCAGCCTACTAGAAGAGGTGAATGTGAAGAGTGAACCATTATCTGATGAGGCCTATGATGATGGAGTGGTTATTGATGGGTCTTACCCAATTATTGAGGATGTCAGCTCTGCCAACAAACTGCAGCCTGAAGGGCCACCTATCTTGGCTTCTTTGGGGCTCACACCTCGAAGTGAGAAGACCTATGTGGATCCCAGAATGGACTGGCATCGGGTTCATGCAATACTGGACATGATCCAAGAAAATGATATCATAGATTCACTCCAGTCCACAGAAGAAAGTGACGTTCTCCATCATTCCGACCATGACTCTGAATCAGAAACAGAGCTGCTAGCCAACGTGGAAGATATCTATATTACCCGCGACCACGGTTATCTGTGTAGAAACAAGAGCGTGCTATCGAAAAACCCGAGGAAATCAGAAATAATCGAAGAAACTAATAAACCAAGAAAACGTAAAGCTACCGCCGTGAAGCATTGTCCTCGACCTAAAAACGCGTGGCAGCTACTGTTCACTGACGATCTACTCGAGCTCATTGTCGCCTCGACCAATGAAAGTATTAGCAAGCAAAGTAAAGCTACCACCACTTACAATGAGATAAGAACACTTATTGGCATTTTATATATGCAGGGAATAATGCGTCCGACGCATGGAAATTACGCTGAACTCTGGGACAGCAACACCGGTATAACATGTATTAACAATGCTATGACTATTGACCGCTTCAGATTTCTGCTGCAAAACTTGCGCTTCGACTGTGAAAACGACGATTCTTTGATACAGTTCGATGTAATGAAACGTATACGAAAGGTTTTCGAAATCTTCGCCATGAACTGTAGGACAGTCTTCGAGGTGGATAGCATCGCGGTCGTCGATGAGATCATTGTGCCAGTTTATGGACCTTGTCCCTTTCGTTACGATATCGATAAGAAGTCGTTGAAATGTGGAATTAAGATCGTTCTGCTAGTAGATCCCACTAACTTTTATATTAGCAATTTGGACGTGATTACTGATCCATATTTCAGCGCAGAGGAGATTGTTAAAAAACTGAACAGGCATTTACTCGGGACTGGGAGAACAATCGTAATGGATAGCTGGTACTTCACAAAACCATTGATGAGCGCCTTGAAAAATTATTATGATCTTTATACAGTGGCAGCATTGAACCCACATGATGAAATAATACCTCCATTATTTCTATCACACTATAGAAAATGCCGTACATTTATGACTGGGTTTCTCAATGAACAAGTCTCCCTGACATCGTATGTCACTTCCGAAGCCAAATCTATAAACATTCTTAGTAATGagccaaaattttataagaaagGTCCTAATATAAACCACCTGAATGCAGTGTCAATGTACAAAAAGAATCAGTCTGTGGTAGAAGTGCTCGATGTACTAATGAATTACTACACTACAATGCAGCATACAAATGACTGGACACTATCATTGTTCTTCACACTATTAAACATTGCTTCGGTGAACGCCCAGGTTATATGGAGCTCTAGAAACACCAATGTTACAAAGCGAAGAATTTTTATAAGGGATTTGGCTACAGGATTGATGGAGAATGATGATTTCTTGGTGGCCCCTTTAGCGGTTAATAAGAGATCTGGTGTGGAGAGTGAAAACAACGAAGATGATTATTTCGAGGAGGAGATGAATGAAACGCCTCAACCGGAGAAAGTTCCAAATATGCCGGAAGTGTCGATCACCGTGATGCGACCCACAGGTGAGACCCTCCACGCGCGGCAAGGTATCCAACAACTCGCGTCTAAAGACTGCCTCATGTGCGGTCGGTCCTACAGATACTCCCACAACGCTCGCCGACATGAGCTCACAACGCACGGCTTCGACAGATACACCAATAAAATTACCAAAAAGTTTCACCATAAACAACCGAAACTCAGGCCCAATCCGTTCAATCCCAAAGCCCGGCTCATGCCTAATCCCATTAGCCATAAATTGCAATTTTTGTCCAAAAAAGTTCCCGCCAAAATAATACCACAGAAAGCTATCCCACCGAGACCTATTCCTATAAAAGCTTCAAAAGCTCCCCAGAATAACCTGCCGTATCCCCTACGTATAAAGGCGTTGAAAGACTTACAGATAAAGAAAAAGGAACCGCAGATTTTGAAGACGTTGCTCACCGCGAAACCAGAAGTGCTCGTATCCGAACCAGAGATATTGAATTCAGGTCCAGAAAGTCCAGAGACGTTGATATCTGAACCCGAGATTGCATCGTTCCAGGTCGAAGCTATACTTTCTGAGCCGAATGATAATGATTATGACCAGAATCAAGACGAGGAAGCCGATTTGGAAAATAATCAGAGTCAAAACTACGATACTGTAGATATGGAATCGGAACATGAAATAGAAATCGCTCGCCAACAAGAAAATGAAGGCGAAATTGAAATGGAAGAAAATGTCGACGATAACGTGAATAACGAAGAAGATAACATTGGCGAAGATATTGAGAGGCATGGTGAGAGCGATAACGAGGGTGATCAAGATACCATTGATAGCCAGGGCCCGATGGAGATAGATGAGAACAACGAGACTAACGGTGTGGATGACGAAGGGAAGGAAGGAGAAGATAATGATGAAGGCGAACAGGAAGAACACGAAATCAATCCAGACGCTGATGATCACGATGACGAAGATGTCCCATCGGCTCCCGTCGTAGAAATGAACGAGGAAGTTCAACCTAACTCAACGAGTGAAATGAATGAAGAAGACGAATATATAGACGAGTCTACCGCCCTAAATGACGATGTCGAAACTAAAGTGTATGATCCTGACAAAACGTATGTTACAAAGGTTCAAAGAGACTTTATCAGCAAATATCGAAATATCATTGAACAAATCAACACGAAGCGATGCCTCTGCTGTGACAAAGAATATCCGCGCAGAAAAGCAGTAGTAcaacatttacaaaaaaatggcCATAAGGTACCCAAACACACATGCTACAACTGTGTCATCACATTCACTCACATTGGTGCTCTTTTGAGTCATATGCGATCCAATAGTTGTACTGATTTATGGAAAATTATTTATGAAGAGAATGGTATTACTGACGCTATTGTTCTCGAAGACCAGGTGCCGACCAAGATTAAGTCTCAATCCAAAGAAGTTTTCAACGCACGCTCCTATGGATGTAGACTTTGTCCTGCTAAATTCCAGCTGAAGCAATCTATAATGAAACACGTGTTGGATGTTCACGAAGACGGTCAGTCAGCTGTGCCACTGAGATGCGTTCACTGCCGCAGTGGCTTCAAAGATAGAACTTTGCTTAAAAAGCATATTCGCGCTGGAGACTGTACAGTGTATATCCACTGTGATTTATGCGCGGGACATTTCAATAGCATTAACACCTTTAACATACATGCTCTATCGGTACACGCCGATAACTTTGAGAAGTCAGACAATCCAAGCAAATGTATCGACGGCCGCTCCACGAACTGTACTATTTGCGGTAAGGACCACAAGAACTACATCAATCTGGTGAAACATTTGAAACTGGTGCACAACGAGGACAAGCCTCATTACTGTCAAAACTGTGACGCTAAATTCGAACAGGCCGGTGACTTAAACAATCATATTTATTCAGAGCACTCAGATCTCAGTATGTCGCAACTTGAACCGGATATGTCTCTGGTTAAGGAGGAAGCCGAGGAGTATCATTATTCATGTACCGAATGTAACGCGATATTCGAGACAGTCGATGCTTGGACGGACCACCAAGTTGCAGAACATAATCAAGTCGCTCATCATTGCGACCAGTGCGACAAAAAATTCTTGCGTCCCTCTGAATTAGCTGAACACAAAAATACTCATTTGAGAGTGAAATTCTACCCTTGCAGTGTATGCTCTAATTCGTACAGTACACCTCAGAAGCTCTCTGAACACGTCCAACAGCAACATCCTGGAGCTGGGGCGGTCGCTTCTATGGATGCTGAATTTTTCTGTGACATATGCATAAGAGCATTCAAAAGTCGTCAAGCGTTTTCAAACCATATGCGCATACATGCGAGAGTACCGACTACTAACAGAAAACCGAATGAACAGAAAGGATTCGATCCGCGTATTATCGGAAAGCCAATTAAACAATTTACCATGGTGCAACCTGGTTTTATCAACTTCAAGCCAAATAATATGAATGTTCCTAACGCGCCCTACAGTTGCGATATATGTGGCAAAGGCTTTATGCACAAGAAAAACATATGGAAGCATAAGAAAGTCTTACACGCggatataataaatgatagaaACGATAGCGAAGAAAACACTATGCACGCTTCTACTGAAGACGATGAGTACAACGTCGATGAAAACGGGGCTCTGTCCACGCCTCAGTTCAACAGTTTCAACTTTTCTAATTTCTCCAATAACTCTTCAATAAGTACTTCGCAAAATCAACATGAGGCTATGCCTTATTCATGCGACTTATGTTCGAAGCGATTCCCGCTTAGAACCAGTTTGTGGAAACACAAACGCGCTAAACACGGAATCGTAAACCCTGGAGCCGGTGCCAGTAATGAGTCGACGCCGCAAGGCATGGCAGGCGAGACCGGTCGATCCAGTTGTACTATCTGCAAAATTACCTTTGCCGATAAAAAGTCCTACTACCGCCACAGGAAGAATGTTCATAAAACAGCAACGCAAATGTGTAAAATATGCGGCAAACCGCTCAATTCAACATTGGAACTGTACGAGCATCTCAGAGCAGCTCACGCGCGAGAATTATTAGGATATAACGCGAATCAGGGCCCTAGTAAGACTCAGGAGATACCTCAAGAGATTGAACCTGAATATGACAATGAACAAGATTCTGGCGATCCTAGCTTAGACTACCAGGCCAGATATCCTTGCGACACTTGTGGCAAACAGTTTGTGGGTTTGTTGGCGTTACAAAACCATCAGTGTATCAATCAGGTCTCTCAGCAACCGCAGACTTTCGACTGTGAAATATGCCACAAGAGTTATACATCCATCGCCGCATTGAAGAGTCATCGCGGTTGGCATTTACGCTCACCCGACGGTAAAGCCGCCGCCAACAATAGCGGTCTATGGATGCCACAGCACAAAGTGACCAGTAAAGTCAGTAAACATGAGGTCGTAGAAGCGGTGCCGTCGGGACGCGCGTCCCACTCGTCGCCCGCCGCAGCCGTCACCGCCAAGAGGAGGCTGCCCCCGGAAGTCGAGGTCACAGTCGTCAATCCAAACAAAAAATTGCGTTCCGACGACTCTGTAGAACTGGATCAGCAAAACGATACCCTGGACGGCAGGTACTGTACCATCTGCGATAAAGAGTTCACGAAGCGCGCCGCTTACCAGCGACACATGGATGAGGTCCACCAACCTAATTCGGTGTTCTGTCCGGTTTGTGATAGAAGTTTTACCAGGAAATCTACACTTCTTGTGCATATGAAGAAACATTACGAGAGCGGAGAGACCAGTGCTTCCGGCACGCAATTAGATGAGGAGGGACATGATTGTGACGTTTGCGGTGCGCATTTTGATAGTGGGAAAGCTTTGACCGCCCATAAGATTAGGAACCACGCGGAGGATTCGGCAGGCGAGTCTGAAGACGAAGGCTTAGTGTCGGAGCTGCAACCGGGAGAGTTCACGTGCGGCCAGTGTGGCGATGGTGTGGCCTGTCCGAGAGATCTTCTCGCGCATCGCACTATGCACGCCACTCCTACGAAATTCTTCTGCAATATTTGCAAAGTTTACTTCACCCGAGCGCTCGATCTCTCCTCGCACACGAGAGCGCGACACGCTGACAACGAGAAAGTATTCTTTCCCTGTGCCATGTGCGATCGTTTCTACATGAACAAAAAGAGTTTGCAGCGCCATATCGAAATGGCTCATTGA
- Protein Sequence
- MNVNYDRVCRLCLSSRGELLPIFPTTSSDDSEPPVLASKINDCVSVQINENDDLPTNVCRKCMDNVNNWHIFKTVCEKTQNKLQSLIKKDGSLLEEVNVKSEPLSDEAYDDGVVIDGSYPIIEDVSSANKLQPEGPPILASLGLTPRSEKTYVDPRMDWHRVHAILDMIQENDIIDSLQSTEESDVLHHSDHDSESETELLANVEDIYITRDHGYLCRNKSVLSKNPRKSEIIEETNKPRKRKATAVKHCPRPKNAWQLLFTDDLLELIVASTNESISKQSKATTTYNEIRTLIGILYMQGIMRPTHGNYAELWDSNTGITCINNAMTIDRFRFLLQNLRFDCENDDSLIQFDVMKRIRKVFEIFAMNCRTVFEVDSIAVVDEIIVPVYGPCPFRYDIDKKSLKCGIKIVLLVDPTNFYISNLDVITDPYFSAEEIVKKLNRHLLGTGRTIVMDSWYFTKPLMSALKNYYDLYTVAALNPHDEIIPPLFLSHYRKCRTFMTGFLNEQVSLTSYVTSEAKSINILSNEPKFYKKGPNINHLNAVSMYKKNQSVVEVLDVLMNYYTTMQHTNDWTLSLFFTLLNIASVNAQVIWSSRNTNVTKRRIFIRDLATGLMENDDFLVAPLAVNKRSGVESENNEDDYFEEEMNETPQPEKVPNMPEVSITVMRPTGETLHARQGIQQLASKDCLMCGRSYRYSHNARRHELTTHGFDRYTNKITKKFHHKQPKLRPNPFNPKARLMPNPISHKLQFLSKKVPAKIIPQKAIPPRPIPIKASKAPQNNLPYPLRIKALKDLQIKKKEPQILKTLLTAKPEVLVSEPEILNSGPESPETLISEPEIASFQVEAILSEPNDNDYDQNQDEEADLENNQSQNYDTVDMESEHEIEIARQQENEGEIEMEENVDDNVNNEEDNIGEDIERHGESDNEGDQDTIDSQGPMEIDENNETNGVDDEGKEGEDNDEGEQEEHEINPDADDHDDEDVPSAPVVEMNEEVQPNSTSEMNEEDEYIDESTALNDDVETKVYDPDKTYVTKVQRDFISKYRNIIEQINTKRCLCCDKEYPRRKAVVQHLQKNGHKVPKHTCYNCVITFTHIGALLSHMRSNSCTDLWKIIYEENGITDAIVLEDQVPTKIKSQSKEVFNARSYGCRLCPAKFQLKQSIMKHVLDVHEDGQSAVPLRCVHCRSGFKDRTLLKKHIRAGDCTVYIHCDLCAGHFNSINTFNIHALSVHADNFEKSDNPSKCIDGRSTNCTICGKDHKNYINLVKHLKLVHNEDKPHYCQNCDAKFEQAGDLNNHIYSEHSDLSMSQLEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCDKKFLRPSELAEHKNTHLRVKFYPCSVCSNSYSTPQKLSEHVQQQHPGAGAVASMDAEFFCDICIRAFKSRQAFSNHMRIHARVPTTNRKPNEQKGFDPRIIGKPIKQFTMVQPGFINFKPNNMNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADIINDRNDSEENTMHASTEDDEYNVDENGALSTPQFNSFNFSNFSNNSSISTSQNQHEAMPYSCDLCSKRFPLRTSLWKHKRAKHGIVNPGAGASNESTPQGMAGETGRSSCTICKITFADKKSYYRHRKNVHKTATQMCKICGKPLNSTLELYEHLRAAHARELLGYNANQGPSKTQEIPQEIEPEYDNEQDSGDPSLDYQARYPCDTCGKQFVGLLALQNHQCINQVSQQPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKVSKHEVVEAVPSGRASHSSPAAAVTAKRRLPPEVEVTVVNPNKKLRSDDSVELDQQNDTLDGRYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDRSFTRKSTLLVHMKKHYESGETSASGTQLDEEGHDCDVCGAHFDSGKALTAHKIRNHAEDSAGESEDEGLVSELQPGEFTCGQCGDGVACPRDLLAHRTMHATPTKFFCNICKVYFTRALDLSSHTRARHADNEKVFFPCAMCDRFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -