Hchr026159.1
Basic Information
- Insect
- Hemistola chrysoprasaria
- Gene Symbol
- -
- Assembly
- GCA_947063395.1
- Location
- OX346736.1:5743300-5747122[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.0045 0.36 12.1 1.9 1 23 24 46 24 46 0.94 2 24 0.33 26 6.2 0.0 2 23 72 94 71 94 0.94 3 24 0.00043 0.035 15.3 0.4 1 23 114 136 114 136 0.98 4 24 0.23 19 6.7 1.8 1 21 140 160 140 162 0.74 5 24 6.6 5.3e+02 2.1 1.6 1 19 166 184 166 189 0.87 6 24 0.0015 0.12 13.6 1.5 2 23 196 218 195 218 0.96 7 24 0.0038 0.31 12.3 0.6 1 23 225 248 225 248 0.96 8 24 0.00037 0.03 15.5 1.4 1 23 254 276 254 276 0.98 9 24 0.26 21 6.5 1.2 1 23 315 337 315 337 0.95 10 24 0.32 25 6.2 0.4 5 23 368 387 367 387 0.93 11 24 0.0032 0.26 12.5 0.6 2 23 408 430 407 430 0.96 12 24 0.0013 0.1 13.8 1.7 2 23 436 458 435 458 0.95 13 24 0.032 2.6 9.4 0.8 1 23 463 486 463 486 0.94 14 24 0.42 34 5.8 0.4 2 23 489 511 488 511 0.92 15 24 0.0054 0.43 11.8 0.8 2 22 518 538 517 538 0.93 16 24 0.0021 0.17 13.1 0.5 1 23 595 618 595 618 0.92 17 24 1.9 1.5e+02 3.8 0.1 3 23 647 668 645 668 0.92 18 24 0.028 2.2 9.6 0.2 2 23 691 714 690 714 0.95 19 24 0.00057 0.046 14.9 0.4 3 20 721 738 719 742 0.90 20 24 0.012 1 10.7 0.6 1 23 747 770 747 770 0.97 21 24 0.00025 0.02 16.0 0.5 2 23 776 798 776 798 0.92 22 24 0.00015 0.012 16.7 6.7 1 23 802 825 802 825 0.97 23 24 0.00036 0.029 15.5 0.6 2 23 832 853 831 853 0.96 24 24 0.0056 0.45 11.7 2.3 1 23 859 881 859 881 0.97
Sequence Information
- Coding Sequence
- ATGAAGATAAATGCTATTATCCTCCTACAATACTCCACTATCATCCCGTTTAAGTGGCACAGACACAACTACCTCTGTTTCTATTGCCACCTCGCTTTCACATCTATAGAAActctaaaaaaacatacaatagaACACAAAAACCCGAACATAAAATCTGCTGTGTCATTCCTACGACGCGACGAAAAGGTCAAAGTCGATGTATCTTCAGTCGAATGTAAACTCTGTGGTGTTATAATTAAAGATCTGAATGCGTTGATAGAGCACGTGAAATTGATCCATGATGTACTTTTTAATGCAGCCGATTATGGCTTGATACCGTATAAATTGGATGGAGGTTATCAATGCGCAGAATGTGACGAAAAGTTTGAGTATTTTATCAAATTGAATCAACATATGAACGCGCACTACGGAGGTTACGTTTGCGAGTTGTGTGGAAAGTCATTTCTAAGCTACGATAGATTAAGATGTCATTCCATAACCCATGGTTCGAAATTCCACTGCAATCAATGCGCTTTATCCTTCGACTCGTTAACCCAAAAGAATAGCCACGATTCGACAGTCCATAATAAGCCAAAACTGCTAAAATGTCAGTACTGCGACGAAAATTTTTCAAACTACCCTCAGAGAAAGAAACACTACAATTCTGTGCATAATATCGAGATACCTGTATTCAAATGCCCGGTTTGCGCGAAATCTTTCCAAATTCTAAGTAAAATGAAGACGCATTTGAAAGAAGTTCACATTCGTGAAAAGAATTTCTCCTGTGCTATGTGTGATCAGAGATTTTTCTCTAAAAATCAAGTGAACAAACACATGATTAGTCACGTGGGTATAAGCAGGAAATACAAGGGAACCGAGTCGATATCGACGCGTCGAAGGACAAACCTACAGATATTATTCAACAATACATCAATAATACCGTTTAAATGGCGCGGAAAATATCTATGCTTCTATTGCAGCAAAGATATGCCGGAATACTCGGAATTGAGAAAACATACGAAGTTACACGGAGACTGTTCTATATCAGATCATTCGCTAAAAGCTCTGAAAGGTGGTCAGAATATGGAGATCAAAATAGACATATCCAACCTTGCTTGTAATTGTACCCAAACATTTTCATCCGTAGAAAAACTTATAACCCATTTGGAAGTAACACACAAACTTACCTACCACAGGAACGTGGAAATGCCTATTGAAGAATACCACCTTGAAGACCTAAAATGTTTGACGTGTGATGAGAAATTTacttattttggttatttagTGTCCCACGTTAATACGAATCATCCCAAAAATTGTCTTATTTGTGATAAGTGCGAGCAAAAGTTTAATAAGAAGCGAGATTTGTTTTCGCATATAAAGAATTATCATCGGGAAGGCGGTTACCAGTGTGAGTTTTGTCCTCAGATATTTAATTCATTGAATATACTACGGAAGCATAGAATTAATAGGCATATGACTAGATGTCATATCTGTCAGTTGAGATTACCATCTGCTGCGTTAAGGCAGAAACATATCGATTTGGAACATCCTGACGACGGCTCGCTACAGTGCGACGTGTGTAGTAAAGAATTCCACACAAAGCAAGGCCTACGCATGCACGCAAGAAAATGCAAAGGAGACTTGCTACTCGCCATCAAGAAGGAAGATTACACAATGGATTTAGACCTAAATTACGAAGATCCGACTAAAAAGCCCAGCGTCAAACAAATTCGAGAAAATATTGTCATAGTTATTAACATGTCTACGGCTATACCTTTTAACTTCTTTAAGAATAAGTTCAATTGTTTCTATTGCTCGAAAGACTTCTCCGATTCCGATGCCATGCGGGAACACACGGTTATCGAACATACAGTTTGCGATGTAAAAGAAAAATGTATCAGAAAGTGTAGGGAGTCAGTAGCGTGCGTTAAAATCGACATTTCTGCGTTAGCTTGCAAAATTTGCTTCGAAAATATGACTGATTTAGATACTTTACTCGATCACTTAATATATAAACACAACGCGAATTACGACAAGTCTATTACAACTTGCTTACAGCCTTACAGACTTATTAAAGATAACATGGTCTGTCCGAATTGTCCAGGGGAAGTTTTTCGCTTTTTCGGGACGCTTTTGAAGCATATGAACAAAAATcatactaataataacattatttgcgTGTATTGCGGTGAAACTTTCCGCCGGGATCAGAATCTACGTGTACATATTTGGCGACATCACCGCGATGGGCGCTTCAAATGTAACATATGCGGAGCCGAATGCAATATCCCCTCACGTCTGTACATGCACATGGCGAAAAATCACGGCGTAAAAGCAGCAAAGTGTCCTAAATGCCCTGAAACTTTCACCACCCAATACCTGCGCCAGAAACATCTCATAGATGCACATAATTCTGGTCACAAATGCACGCACTGCGGCAAGCTTTTTACTAGAAACTCTTTCATGCGCGATCATATCAGAAGGACACATCTGAAGGAGAAAAATGTTGAGTGTTCCGTGTGTAATAtgaaatttttcaataatatattgCTTAGGAGGCACATGGTCAAGCATAGTGGGGAAAAGAATTTCCATTGTGATGTATGCGGGGAACGATTTTTTTGGCGGAAAAGTCTGCGGACTCATATGGCTAGGCATGATAAACATTTGGAGCATAACATGCATTTGTAG
- Protein Sequence
- MKINAIILLQYSTIIPFKWHRHNYLCFYCHLAFTSIETLKKHTIEHKNPNIKSAVSFLRRDEKVKVDVSSVECKLCGVIIKDLNALIEHVKLIHDVLFNAADYGLIPYKLDGGYQCAECDEKFEYFIKLNQHMNAHYGGYVCELCGKSFLSYDRLRCHSITHGSKFHCNQCALSFDSLTQKNSHDSTVHNKPKLLKCQYCDENFSNYPQRKKHYNSVHNIEIPVFKCPVCAKSFQILSKMKTHLKEVHIREKNFSCAMCDQRFFSKNQVNKHMISHVGISRKYKGTESISTRRRTNLQILFNNTSIIPFKWRGKYLCFYCSKDMPEYSELRKHTKLHGDCSISDHSLKALKGGQNMEIKIDISNLACNCTQTFSSVEKLITHLEVTHKLTYHRNVEMPIEEYHLEDLKCLTCDEKFTYFGYLVSHVNTNHPKNCLICDKCEQKFNKKRDLFSHIKNYHREGGYQCEFCPQIFNSLNILRKHRINRHMTRCHICQLRLPSAALRQKHIDLEHPDDGSLQCDVCSKEFHTKQGLRMHARKCKGDLLLAIKKEDYTMDLDLNYEDPTKKPSVKQIRENIVIVINMSTAIPFNFFKNKFNCFYCSKDFSDSDAMREHTVIEHTVCDVKEKCIRKCRESVACVKIDISALACKICFENMTDLDTLLDHLIYKHNANYDKSITTCLQPYRLIKDNMVCPNCPGEVFRFFGTLLKHMNKNHTNNNIICVYCGETFRRDQNLRVHIWRHHRDGRFKCNICGAECNIPSRLYMHMAKNHGVKAAKCPKCPETFTTQYLRQKHLIDAHNSGHKCTHCGKLFTRNSFMRDHIRRTHLKEKNVECSVCNMKFFNNILLRRHMVKHSGEKNFHCDVCGERFFWRKSLRTHMARHDKHLEHNMHL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -