Hchr026150.1
Basic Information
- Insect
- Hemistola chrysoprasaria
- Gene Symbol
- -
- Assembly
- GCA_947063395.1
- Location
- OX346736.1:5707968-5714430[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.0024 0.19 12.9 3.7 1 23 51 74 51 74 0.95 2 21 0.027 2.2 9.6 0.7 2 23 100 122 99 122 0.95 3 21 0.1 8.4 7.8 1.3 2 23 145 167 144 167 0.95 4 21 0.014 1.1 10.5 0.9 1 23 173 195 173 195 0.94 5 21 8.7e-05 0.007 17.5 3.8 1 23 201 223 201 223 0.98 6 21 2.2e-07 1.7e-05 25.6 0.9 1 23 229 251 229 252 0.96 7 21 0.0027 0.21 12.8 2.1 2 23 348 370 347 370 0.95 8 21 0.099 8 7.8 0.3 2 23 395 417 394 417 0.89 9 21 0.00017 0.014 16.5 1.6 1 23 476 499 476 499 0.97 10 21 0.00074 0.059 14.5 0.7 1 23 505 528 505 528 0.97 11 21 0.052 4.2 8.7 1.0 2 23 535 556 534 556 0.93 12 21 0.0027 0.21 12.8 3.4 2 23 563 584 562 584 0.96 13 21 0.0097 0.78 11.0 3.1 1 23 636 659 636 659 0.96 14 21 0.0098 0.78 11.0 0.2 2 23 685 707 684 707 0.95 15 21 0.49 39 5.6 2.0 2 23 730 752 729 752 0.90 16 21 5.1e-05 0.0041 18.2 0.7 1 23 758 781 758 781 0.96 17 21 0.049 3.9 8.8 0.1 2 23 810 832 809 832 0.96 18 21 1.3e-05 0.0011 20.0 1.5 1 23 839 862 839 862 0.96 19 21 0.02 1.6 10.0 1.7 1 23 868 890 868 890 0.97 20 21 0.0019 0.15 13.2 1.8 1 23 896 918 896 918 0.98 21 21 1.5e-06 0.00012 23.0 1.6 1 23 924 946 924 947 0.96
Sequence Information
- Coding Sequence
- ATGACTATAATTTCAACTTTCACATTTCCAGATTTGGATGACATTGAGCAGAGTCTCTCCGGATCACAGCGCAAGGAAGAGGTCATGAAATTATTCACGGTTATCTTTGAGAACTCCACTGTGATGCCCTTCCGATGGCAATGCAATAAATACATGTGCTTCTACTGCGGGTGTCCCTTCACAGACTGCGCTTCCTTAAAGGAACACAATCGTTTAGAACATCCAGATATGAAAATACGCAGTGCGTTCAAAACTCTACTCAGAAACAGCAAAGTCAAACTAGAAGTTTCAGAGATCAAATGCAAACTGTGTTCCCAAGAATTTACAAAGTTACATCCCCTTGTTGACCATTTGAGAGATGCGCATAAGTTGGAAACCAACTCTGCAGTACGGTCCGAACTACACGCCTACAAATTAGACGACGAGGACATGCAGTGCCTAGAATGTGGCgagacttataatttttttgcttCGATGTTGAAGCATTATCACTCGTTGCACAACAAAAACGAACAGCACATTTGCGAATTCTGCGGAATGAGAGCGTTTAACAGATATAGTTTGAATGTTCACATGGTCTCTCATGATGACGCGAGGCCGTTCGAATGCGAGTTTTGTAAGAAATCGTTTCAAAGGAAGAAGACTTTAGAATATCATAGAAGGATTCACACGAATGACAAGAGATACGTGTGCAAGATATGCGGGAAAGCGTTCGTTCAGCCAACGAGTCTGAAGTTGCATTACAGGGTGCATCATCCCGACGAACCTACGCGCGATTCCGTCGACATTGAGCAGAAAATCTACGGGTTGGAGTGCAAGGAAAAACTGGCTACACTTCTCACGGTCATCATAGAGAACTCCACGGTGATGCCCTTCCGATGGCACGGCAACAAATACATGTGCTTCTTCTGCGCTTGTCTTTTCTCAGACAGCGCTCGCTTAAAAGAACATAATCATTTAGAACACCCTGATAAGAATATACTCAGCTCGTTCAGAAGTCTCCTCAAAAACAGCAAGGTCAAACTAGAAATATCCGAGATGAAATGCAATCTTTGTTCCCAAGAATTCATAAACTTACACCATCTTATAGACCACTTGAGAGATGAGCACGAGTTGGAAGCCGACATCGAAGTACGGTCCGAATTGCACAAATTAGCATACAAATTAGATGATGAGAACATGGTGTGCCAAGTGTGCGGCGAGAAGTTCCAGTTCTTTTCAATGATGTTGAGGCATTACTACGCGGTGCACAACAGAAACGATCACTGCATTTGTGATGTTTGCGGAATGTTTGTCGCTAAAACCAACATCGCGGCGCACGTACGAAACGTACATAACCGTGAGACGAATGTGCCCAGCCCTCAAAGTGACGCGAGTTACTCATCAACTAGCAATCAGTATACCGCTAGCATAACTTCAGTCAAACATAAATGCCCGAAGTGTCAGGAAATATTTACTACTCCATACCTCAAAAAACGTCACCTTGCCACAGTGCATAACGTAAAAGACAAATATAAATGCGATCAGTGTTATCTGACTTTTCCGGTTCCAAGTCGTTTGAACAGACACAAACAGAGTGTACATTTGAAGCTGCGTTCATTATCATGTGAATTTTGCGACTACAAAGCGTTTAACAGACATGGTCTGAATAATCACATGGTCGTTCATGACGACACGAAACTATTAGAATGCGAGTTTTGTGATAAAAAATTCAAGAGGAAGAAATCTTTTGAGTTTCATAGAAGGATTCACACCAATGATAAGAGGTACGTTTGCAAGATATGCGATTCGGGTGCCAATGAGCGCAGACTCTCCGGGTTAGAGATCAAGGAAAAATTGGCGACATTGTTCACAGTTATAATCGAAAACTCCACAGTAATTCCCTTCCGATGGCACTCTCACAAATACATGTGCTTCTACTGCGGGAGCTCCTTCGCAGACAGCGGTCGCTTAAAAGAACACCACCATTCAGAACACTCTGATATGAAAATACGCAGTACGTACAGAAGCCTTCTCAGAAACAGCAAAGTCAAACTAGAAATATCCCAAATCAAATGCAAACTGTGTTCCCAAGAATTCACAAAGTTAGATCCACTTATTGATCATCTGAGAGATGAGCACGAGATGAAAACTGACGTTGCAGTCCGGTCTGAAGTGCACGCATACAAATTAGACGATGAAAACATGGAATGCCAAGAATGCGGAGAGAAATTCCATTTCTTTGCGACGATGTTGAAGCATTATCACGCGGCCCATAACAAAAGCGAACAACACGTTTGTGAGATTTGTGGAATGAGTTTTATCAGCAAGCACAACGTCGCAGCGCATGTCAAGAAAGTACACTACAAAGATGCAAGCATGCCATGCACTCAATGTACCAGTAACTCAACATGCAGTCATATAAATAGTGGCAGCAAAACTACACTGAAATGCCCCAAGTGTCCGGTAATCTTGCCCACTTCGTACATGAAAAAACGTCACTTAGCCACGGTACACAACGTGAAAGGGGAGCAATATGATTGCGACCAATGTCCTAAGACTTTCTCAAATCGCAGTCTATTGCTCACACATAAGCAAAGGACACATTGGAAAGAGCGAACATTTACTTGTCAGATTTGCGGCTACAGAGGGTTCAACAAACATAGTGTTAATCTCCACATGGTGTCACATGATGACGCGAGGCCGTTTGAATGCGAAGTTTGTAAGAAAGCGTTCCAAAGGAGGAAGACTTTAGAGTTTCATAGAAGGATACACACGAATGATAAGAGATACGTATGCAAGATATGTGGGAAAGCATTCGTTCAGACAACGAGTCTGAAGCTGCATTATAGGGTGCATCATCCTGAAGAACCTGCGCGCGATGGTAGAACTGATAGTCGTATTGCTCGAAATGAGAAATAA
- Protein Sequence
- MTIISTFTFPDLDDIEQSLSGSQRKEEVMKLFTVIFENSTVMPFRWQCNKYMCFYCGCPFTDCASLKEHNRLEHPDMKIRSAFKTLLRNSKVKLEVSEIKCKLCSQEFTKLHPLVDHLRDAHKLETNSAVRSELHAYKLDDEDMQCLECGETYNFFASMLKHYHSLHNKNEQHICEFCGMRAFNRYSLNVHMVSHDDARPFECEFCKKSFQRKKTLEYHRRIHTNDKRYVCKICGKAFVQPTSLKLHYRVHHPDEPTRDSVDIEQKIYGLECKEKLATLLTVIIENSTVMPFRWHGNKYMCFFCACLFSDSARLKEHNHLEHPDKNILSSFRSLLKNSKVKLEISEMKCNLCSQEFINLHHLIDHLRDEHELEADIEVRSELHKLAYKLDDENMVCQVCGEKFQFFSMMLRHYYAVHNRNDHCICDVCGMFVAKTNIAAHVRNVHNRETNVPSPQSDASYSSTSNQYTASITSVKHKCPKCQEIFTTPYLKKRHLATVHNVKDKYKCDQCYLTFPVPSRLNRHKQSVHLKLRSLSCEFCDYKAFNRHGLNNHMVVHDDTKLLECEFCDKKFKRKKSFEFHRRIHTNDKRYVCKICDSGANERRLSGLEIKEKLATLFTVIIENSTVIPFRWHSHKYMCFYCGSSFADSGRLKEHHHSEHSDMKIRSTYRSLLRNSKVKLEISQIKCKLCSQEFTKLDPLIDHLRDEHEMKTDVAVRSEVHAYKLDDENMECQECGEKFHFFATMLKHYHAAHNKSEQHVCEICGMSFISKHNVAAHVKKVHYKDASMPCTQCTSNSTCSHINSGSKTTLKCPKCPVILPTSYMKKRHLATVHNVKGEQYDCDQCPKTFSNRSLLLTHKQRTHWKERTFTCQICGYRGFNKHSVNLHMVSHDDARPFECEVCKKAFQRRKTLEFHRRIHTNDKRYVCKICGKAFVQTTSLKLHYRVHHPEEPARDGRTDSRIARNEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -