Hchr002916.1
Basic Information
- Insect
- Hemistola chrysoprasaria
- Gene Symbol
- -
- Assembly
- GCA_947063395.1
- Location
- OX346711.1:89780-94583[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.0018 0.14 13.3 4.0 1 23 151 174 151 174 0.90 2 27 0.44 35 5.8 0.1 2 20 204 222 203 224 0.93 3 27 0.00033 0.027 15.6 0.1 2 23 254 276 254 276 0.96 4 27 0.19 16 6.9 0.0 1 23 288 310 288 310 0.96 5 27 6.7e-05 0.0054 17.8 3.0 3 23 342 362 340 362 0.96 6 27 0.00019 0.015 16.4 1.4 2 23 415 437 414 437 0.96 7 27 5.1e-05 0.0041 18.2 1.9 1 23 487 510 487 510 0.97 8 27 0.0024 0.2 12.9 0.3 3 23 561 581 559 581 0.95 9 27 0.0036 0.29 12.3 10.7 1 23 592 614 592 614 0.98 10 27 0.0083 0.66 11.2 0.2 2 23 626 647 625 647 0.96 11 27 0.22 17 6.8 2.1 1 23 657 679 657 680 0.95 12 27 0.15 12 7.2 2.8 1 23 707 729 707 729 0.93 13 27 0.0058 0.46 11.7 0.6 1 23 740 762 740 762 0.95 14 27 8.3e-05 0.0066 17.5 0.8 1 23 770 792 770 792 0.97 15 27 0.023 1.8 9.8 0.0 2 23 807 829 806 829 0.96 16 27 0.075 6 8.2 0.1 3 23 850 870 848 870 0.95 17 27 0.35 28 6.1 0.2 2 23 910 932 909 932 0.94 18 27 0.00028 0.022 15.9 0.0 2 23 958 979 957 979 0.95 19 27 0.29 23 6.4 0.3 2 20 983 1001 982 1003 0.92 20 27 0.036 2.9 9.2 0.0 3 23 1061 1081 1060 1081 0.94 21 27 0.00055 0.044 14.9 0.5 3 23 1089 1109 1087 1109 0.97 22 27 0.043 3.4 9.0 0.3 2 23 1120 1142 1119 1142 0.93 23 27 0.43 35 5.8 0.9 2 23 1158 1176 1157 1176 0.86 24 27 0.48 39 5.7 0.7 2 20 1180 1198 1180 1199 0.93 25 27 0.083 6.6 8.1 0.4 2 23 1253 1274 1252 1274 0.94 26 27 0.076 6.1 8.2 0.1 2 23 1285 1307 1284 1307 0.94 27 27 0.1 8.1 7.8 1.0 2 21 1345 1364 1345 1365 0.93
Sequence Information
- Coding Sequence
- ATGTTTGTGAAACTAAGGACAGTATACGAAGGCGACGGACTGCCGGACAAGGTTTGCTCGGAGTGTATTCAGAAGCTCAGCGGCGCGTACATATTCAAACAACAATGCGAGAGAGCCGACCGCGAGCTGCGACGGAACTACGTCGTTCCCGCGGGCGCCGAGCGCCGCTCCGGCCCCGGCCCGGCCTCGGCCCCCGACAGGCAGAGCAGCGACTCCGCATTCTCCACGCACACCGACAGCTCCAACTTGAAATCCTCCCTCGTCGAAAGAGAAACGACCCCCGCCAGCGGAGCTCGGAAGAGGAGCGTGGAGAGCGACGAGGGTCGGGCGGGCAAGCGCGCGCGCCGCTCCCCGTCCCCGGCCGACTCCGCGGCCGACTGGGGCGCCGCCTCGCCGCGCGCGCCCGACTCCGACTCCGACTCGGCCGCGTCGCGCGCGCACTCCGCGCCGCACCGCTGCCACGTGTGCCGCAAGACCTTCAAGTACAAGACGAGTCTCGACCGCCACGCGGCGCTCGTCCACCGCGAGCGGGAGAGCTCCCCCGCGCCCCCGCCCGCGCCCCCGCCCGCGTCCTCCGCCGCGCCCTCGCCCGCGCCCCTCTCCGAGCTCTCGTGCGACCGGTGCGACGGCACCTTCAAGTTGAGGATCGCGCTCGAGAAACATCGAGAGGGGTGCGACGGGAGGAAGCCGCCGCGGGAGCCGCTCATCTCGCTGGAGCCGATCGACGCGATACAGAGGGCCGCGGCCTCGAGGAAGCCCGTGTGCGAGTACTGCACGGCCGGGTTCAAGAGTGTCGCGAACCTCGAGAAGCACCTGAGGGTGGTCCACGCGGCGATCCTCAAGCGGGAGAGCGGCGCCTCGTTCCAGTGCCGCGTGTGTCGCGCGCGCGTGCGCTCGCAGGCCGCGCTCGTGCTGCACCTGGCGGCGCACGCGGGCccccccgcgccgccgcccgcgcccccgccgccccccCCGCCCGCGCCCGGGCCCGCCGCCTCCGAGCCCGCGCCCGCCGAGCTCGCGTGTCACGTCTGCGACAAGCgcttcaaatataaaaaatcgcTCGCGTCTCACGAACGGAAGCACACCGAGGACGAGGCCGCGGTGAAGAGAGAGCCGCCCGACGCTCCGCCGGAGCCGGAGCCGGAGCGCGACGAGGGGGAGGAGCCGGAGCCGACGGGGGAGGGGGACGGGGAGGGGGAGGGGGAAGAGGAGGAGGACGAGGAGGAAGAGGACGAGCTCACGTGCGACGTCTGCGACAAGATGTTCTCGTACAGGCGCGTGCTCGAGCAGCACAAGAGGACCAAGCACAACATGTCGTCGGGCACGAGGCGCGCCAGGATCGCGCTCAAGGACTGCGCCGTGCGGTGTCTCATCTGCGACCTCGAGATGAAAGTGAGCACCGTCAACGATCACAACCAGAGACACATCTCGGAGAACGTCCGCCCGAGGAACGTGTACACGTGCGCCGAGTGCCAGCAGCGGTTCAAGAGCTGCAGCAACCTCGCCACACACATCAAGCTGGTGCACAGGTTGAAGCAGCGCGTCGACCAGGTGCCGCGGCGGTTCCTCGGCGCGAGCGTCGCGGACCTCTGCGAGGTGGTGGCCGCCGAGCCGGAGTCCGCCCCGGGCCCCGCCCCCGGCCCCGGGGGACCCGCCGTCGAGGTCGGCGGGCTCGCGTGTCACGTGTGCGGCAAGACGATGCCGACGCTCGTCTCGCTGAAGAGGCACGTGAACTGGCACGTGAACGTCGGCGACCGCATCGAGGCCAACCACGAGTGCTTCGTGTGCAAGGAGCGGTTCCGGTTCCGCTGCCACCTGCGCAAGCACATGCGCACGCACTACGCCGACCCGGCGCTGGACCCCGCGCTGCTGGAGTGCGACGTGTGCGGCCGCCGCAGCAAGAACCTGCGCGCCGCGCGCGCGCACATGAACTACCACAAGCAGACGCGCTTCCGCACCGCCGACTACGAGTGCTCCATCTGCAAGCGCGTGCTGCAGCACCGGCGCGTGTACCTCGCGCACATGGCGCTGCACCACCGGCGCGGGGACAGCGCGCGCTCCGCCCTCGTgggcgccgcgcccgcgcccgcgccccccGGCGCCGGCGCGCCCGCGCACGCGTGCCACCTGTGCGGCGCCGCCTGCGACTCGGAGACGGCGCTCAAGCACCACCTGGTGTGGCACGAGTCCCGCGGCGTGCTGTACGGCGCGCGGCACGCGTGCGCGCTGTGCCCGCTCGTGTTCACCAACAAGCGGCGGCTGGAGCTACACACGCGCGCGCACTACGAGGACGACGCCGGCCCGCACCGCTGCCCCGTCTGCGACAAGGGCTACACCGACGAGGGCTACATGCGCCGCCACCTCAAGGGACACAACTTCGACAACGCGgagcgcgcgcgcgccgcctccCAGGTGCAGTGCGGCGCCTGCCCGCGCCGGTACGCCTCCGCCGAGCGCCTGGCGCGCCACGTGCGCCGCGCGCACCCCGCCGCCGCCGTCAAGGAGGAGCCGGGGGAGGGGGAGGGGGAGGACGGCGCGCTCGCGTGCTCGCTGTGCGCGCGCGTGTTCCCCGACGCGCGGCGCCTGCGCCTGCACGAGCGCGCGCACGCCCGCCGCCCCACCTTCCTCGCGTGCAAGTTCTGCGGCATGAAGAACATCTCCGCGCGCCGCCACCGGCTGCACCTGCGCTCGCACCTGACGCGCAAGCACCGCGACGCGCCGCTGCGCTGCCCGCGCTGCCCCGACACCTTCGTGCTGGGCTACGCGCTGCACCGCCACCTGCGCGACGCGCACGGCGTGGAGGAGACGTGGGCGGAGGAGCGCGCGgggcccgcgccgccgcccgcgcccggcGCCGCGCGCGCGCTGCAGTGCGACCTGTGCGGCAAGGTGCTCGCCTCCGAGGGCAACCTGGAGCGCCACCTGGACTACCACGACTCGCTGCGCTGCAACTACTGCTTCGAGCGGTTCTCGGGCGCGCGCTTCCTCGAAGGCCACCAGACGTACGCGTGCCGCAAGCGGCGGCTCGTGGGCGCGTCCGAGCCGCACGCGCGCCGCCTGCGCTGCCCGCGCTGCCGCGAGCCCTTCCACCTGCGCGTCAAGCTGGAGTGCCACCTGCGCGTGCGCCACGGcgagcgcgcgccgccgccgcccgcgcgcgCCCCCCCGCCCGTCGCCTGCGACTACTGCTTCCGCGAGTTCCCGGACGCGGCGGCGCTGGCGTCGCACCGCGTGTACCACCGCTCCGTGGCGCACTACGGCTGCCGCTACTGCCCACGCAGGTTCCCCACGCCGGCCGCCTTCCGCCGCCACCGCACCTCGCACCTGTACCGGCTCGACCCGGAGCGGCCCTCGCGCTGCGCGCACTGCCCCGAGACGTTCGTCGCCTTCCGCGACATGATCCGCCACATGAGCGCCGCGCACGGCGACGACGAGTGGCTCGTGCCGCCCGCCGACGACGCCGAGCAGACCTGCCCCGTCTGCTCCAAGCGGTTCCTCAACCTGCGCCGCCACCTCGACTACCACGAGGAGAACCGCTGCGCGCGCTGCGGCGAGTACTTCTCGTCGCGCGGCGCCTTCGACGCGCACCGCTGCCCGCTCGAGGCGGACGAGGCGCCGCCCGCGTCCCCCGCCgccgcgccccccgcgccccccgccgacGCCGGCGAGGAGTGCGCCTTCTGCTTCAAGGCGATCACGCGGCGCGACTCGCGCAGGAAGCACGACGCGCTGCACGCGGCCTCCGGCGCCATCTCGTGCCGGTTCTGCGACGCCAAGTTCAAGACGCTGACGGCGTTCGAGGCGCACGCGTTCTCGCACCGCAGCCGCAAGTACGCGCGGCGGCCGCTCGAGTGCGGCTCGTGCGGCGCGCGGTTCGACCGCTACGGGCCGTTCGTGCGGCACCGGCGCGAGGCGCACGCGTGCCGCCGCAAGATGCACTACCGcgggcgcgcgcgcgccgcgccctGCGTCGTGTGCGGCGGCTCCTTCCCCAACCTGCACAACCACTACCGCGCGCACCTCGCCAACCGCTGCGCCGACTGCCGCAAGTACTTCACGTCCGCGCGCCTGTTCGCCGCGCACCGCTGCGAGCGCGCCGACGCCGAGCCCGCGCGCGTGTTCCTCTGCGACGCCGACCTGCCGGCGCTGATCCGCGCGCACGTGCCCGCCGACGAGAGCGACGCCGACGAGAAGTTCTACCGGCAGAGCGACGAGGAGGGCCCCCCCGACCCCCGCACCGCGGACGAGCGCTCCGTGCACGACATGGCGCAGGCGCCCATCATCTCCGACGTGCTGTCGCTGTTCCGGCGCGCGGACGAGCCGGAGACCGTGCTCGTGCTGGACTCCGACTAG
- Protein Sequence
- MFVKLRTVYEGDGLPDKVCSECIQKLSGAYIFKQQCERADRELRRNYVVPAGAERRSGPGPASAPDRQSSDSAFSTHTDSSNLKSSLVERETTPASGARKRSVESDEGRAGKRARRSPSPADSAADWGAASPRAPDSDSDSAASRAHSAPHRCHVCRKTFKYKTSLDRHAALVHRERESSPAPPPAPPPASSAAPSPAPLSELSCDRCDGTFKLRIALEKHREGCDGRKPPREPLISLEPIDAIQRAAASRKPVCEYCTAGFKSVANLEKHLRVVHAAILKRESGASFQCRVCRARVRSQAALVLHLAAHAGPPAPPPAPPPPPPPAPGPAASEPAPAELACHVCDKRFKYKKSLASHERKHTEDEAAVKREPPDAPPEPEPERDEGEEPEPTGEGDGEGEGEEEEDEEEEDELTCDVCDKMFSYRRVLEQHKRTKHNMSSGTRRARIALKDCAVRCLICDLEMKVSTVNDHNQRHISENVRPRNVYTCAECQQRFKSCSNLATHIKLVHRLKQRVDQVPRRFLGASVADLCEVVAAEPESAPGPAPGPGGPAVEVGGLACHVCGKTMPTLVSLKRHVNWHVNVGDRIEANHECFVCKERFRFRCHLRKHMRTHYADPALDPALLECDVCGRRSKNLRAARAHMNYHKQTRFRTADYECSICKRVLQHRRVYLAHMALHHRRGDSARSALVGAAPAPAPPGAGAPAHACHLCGAACDSETALKHHLVWHESRGVLYGARHACALCPLVFTNKRRLELHTRAHYEDDAGPHRCPVCDKGYTDEGYMRRHLKGHNFDNAERARAASQVQCGACPRRYASAERLARHVRRAHPAAAVKEEPGEGEGEDGALACSLCARVFPDARRLRLHERAHARRPTFLACKFCGMKNISARRHRLHLRSHLTRKHRDAPLRCPRCPDTFVLGYALHRHLRDAHGVEETWAEERAGPAPPPAPGAARALQCDLCGKVLASEGNLERHLDYHDSLRCNYCFERFSGARFLEGHQTYACRKRRLVGASEPHARRLRCPRCREPFHLRVKLECHLRVRHGERAPPPPARAPPPVACDYCFREFPDAAALASHRVYHRSVAHYGCRYCPRRFPTPAAFRRHRTSHLYRLDPERPSRCAHCPETFVAFRDMIRHMSAAHGDDEWLVPPADDAEQTCPVCSKRFLNLRRHLDYHEENRCARCGEYFSSRGAFDAHRCPLEADEAPPASPAAAPPAPPADAGEECAFCFKAITRRDSRRKHDALHAASGAISCRFCDAKFKTLTAFEAHAFSHRSRKYARRPLECGSCGARFDRYGPFVRHRREAHACRRKMHYRGRARAAPCVVCGGSFPNLHNHYRAHLANRCADCRKYFTSARLFAAHRCERADAEPARVFLCDADLPALIRAHVPADESDADEKFYRQSDEEGPPDPRTADERSVHDMAQAPIISDVLSLFRRADEPETVLVLDSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -