Hchr026182.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Hemistola chrysoprasaria
Gene Symbol
-
Assembly
GCA_947063395.1
Location
OX346736.1:5948302-5958144[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 0.0046 0.37 12.0 0.3 1 23 159 182 159 182 0.92
2 26 0.0036 0.29 12.4 0.7 2 23 209 231 208 231 0.94
3 26 3.5 2.8e+02 2.9 2.9 2 23 254 275 253 275 0.95
4 26 0.016 1.3 10.3 0.4 1 23 279 301 279 301 0.98
5 26 6.9e-05 0.0056 17.8 2.1 1 23 306 328 306 328 0.98
6 26 0.00069 0.055 14.6 1.3 1 23 335 358 335 358 0.98
7 26 2.1e-05 0.0017 19.4 1.7 1 23 364 387 364 387 0.98
8 26 0.039 3.2 9.1 3.4 1 23 393 415 393 415 0.98
9 26 0.02 1.6 10.0 0.4 1 23 516 539 516 539 0.91
10 26 0.24 19 6.6 0.5 2 23 566 588 565 588 0.94
11 26 0.096 7.7 7.9 1.2 1 23 610 632 610 632 0.96
12 26 0.0084 0.67 11.2 0.1 1 23 636 658 636 658 0.97
13 26 5.4e-05 0.0044 18.1 2.8 1 23 663 685 663 685 0.98
14 26 0.0012 0.099 13.8 1.2 1 23 692 715 692 715 0.97
15 26 2.8e-06 0.00022 22.2 1.9 1 23 721 744 721 744 0.97
16 26 0.0085 0.69 11.2 1.5 1 23 750 772 750 772 0.97
17 26 0.081 6.5 8.1 7.1 1 23 778 800 778 800 0.95
18 26 0.44 35 5.8 0.9 1 23 898 921 898 921 0.94
19 26 0.25 20 6.6 0.6 2 23 948 970 947 970 0.94
20 26 0.037 3 9.2 0.7 1 23 992 1014 992 1014 0.97
21 26 0.036 2.9 9.2 0.4 1 23 1018 1040 1018 1040 0.98
22 26 0.0001 0.008 17.3 2.1 1 23 1045 1067 1045 1067 0.98
23 26 0.0016 0.13 13.5 1.6 3 23 1076 1097 1074 1097 0.97
24 26 9.6e-06 0.00077 20.5 0.8 1 23 1103 1126 1103 1126 0.98
25 26 0.013 1.1 10.6 1.3 1 23 1132 1154 1132 1154 0.96
26 26 0.0029 0.23 12.7 6.5 1 23 1160 1182 1160 1182 0.96

Sequence Information

Coding Sequence
ATGCGCAAACGCGACTTGACTATCACAGGTATCGGTGTGGCATATGTATTTGGTTGTATTGGCAAAAACGACAGACGTCATATTCGAGCCAACGACGTCACTTGCACGCAAATTAGAGTAACGGATCGCTGCTCCCCGTTGCATTTCCGTTGGGTGCCTATTGAAGTCTGTTATGTCAAATTAAATGAAGAAGTAGGTTTCGTTTGTACCTTCGCTGACGTCAATATAAAGACAGAAGAGGATAGTGGGTCGGGTTTATCAAATCGGCCTCAGGTGAAAATAAACAAGAGAATAATCAAAATAGAACCCGCCAAAACCAACCCTGAACCGATAAGAGAGATAAAACTCGTAAAAAAGAAAGTAATATATCTCGGAAAAGACAGCCCTGTGATACTGAAACACCGACATAACATTCGCTCAATACTACAGTATTCAAACTCGACACCTATAGGGCACCATAACGTCGGAACAGGCTTCGCCTGCGGATTCTGCGAGGAATCCTTCCACAAACCAGGGGATCTCAAAACGCACATAATTGACGAACATAATCAGGACAAACACAATTATACACAAATCATGAAACCACTCCCGGCTCTAGTAGTGAAACTGGACATTACGGGTCTGCACTGTAACATCTGCAAAACGGAGTTCACCACGATCGAAGAACTGATCGAACATTTGAATCAGACTCACGATAAACGTCTATACACCGATATCAAGAACCAGATAGTATGCTTCAAGCTCGATGGTGATTCGTTGAAATGCATGTTTTGCCAAGCCGAATTTATTACGTTCAGAGCGTTGCACTTACATGTGAACCATCATTGCAGGAACTTTGTATGTGAGATTTGTGCGGCCGGCTTCGTCAACCAGGTCATGTTTGATCATCATACGAAAACACATATCATCGGCGAATTTAAATGCCGATCATGCGACAAAAAGTTTGAAACAAAAAGCAAACTGATGTGGCATGCGAGGTTGCACACACCGCAAGGTCCTAAATTCAGTTGTGTTCAATGTGGCGAGAGGTTTGAAACCAATAAGCTAAGAAAAGATCACATGAAGACAATGCACGGCGCTAAATATGAATACAAATGCCCGACTTGTGATAAAAAGTTCAATAGTACAGTAACTCTTTGGACACATAAGAGACGAGACCATTTATTGGAGCGCAAATTCGAGTGCGAACATTGTGATATGAGGTTCTTTTCTAAACAAGAAAAAGACAATCATTTGAGTACTCACAAAGACGCGAGAGAGTTTTTATGTTTCGTTTGTACCGTCGGTGATGTCAAAATAAAGAAAGAAGAGGATAATAAGTCTGGTTTATCAAAGCGGCCCAAAGTGACGATAAACaagaaaaaaatcaaaatagaaTCCGCCGAAACCAACCCTGAACCGCCGAGAGAgataaaacttgtaaaaaagaaaataatatttctcGGGAAAGAAAGGCCTTTGTTACACAAACACAGATACAACATTCGCACCATACTGCAGTATTCAAACGCGACACCGATGGGGAATTATAACGCCGGGACAGGCTTTGCCTGCGGATTCTGCGAGGAATCCTTTCATAAAGCAGGGGATCTCAAAACGCACACCATTGCGGATCATAATCAAGACAAACCCAACTTCATACAAATTATGAAACCTCTTGCGGATTTAGTAGTGAAACTGGATATTTCGTGTCTGCACTGCAACATCTGCAAAACGGAGCTGAACACGATCGAGGAACTGATCGACCATTTGAACCAAACGCATGATAAGCGCTTACACACCGATATCAAGAACCAAATATTGTGCTTCAAATTCGATGGAGATTCGTTTAAATGCATGTTTTGTAAAGTCAATTTCATTACGTTCAGAGCGTTGCAAATTCATGTGACTCAACATTACAGGAACTTTATATGTGAGATTTGTGCTGCTGGTTTTGTCAACCAAACTATGTTTGATAAACATATGAAAGCGCATATCATCGGTGAGTTCAAATGCCGTTCGTGCGACAAAAAGTTTGAAACGAAAAGCAAACTAATGTGGCATGAAAGATCGCACGCTCCACACAGTCCTAAGTTCAATTGTGTTCAATGCGGCGAGCAATTTGAAACAAATAAGCTTAAAAAGGATCATATGAGAACAATGCACGGCGCTAAATATGAATACAACTGTCCTACTTGTGATAAGCAGTTTACTAATAAGACGTCGTTGTGGACACATAGGAGACGAGACCATTTATTGGAGCGCAAATTCGAGTGCGAACATTGTGATATGAGGTTCTTTTCTAAAGCAGAAAGAGATGATCACATGGTGACTCACACTGACTTGAGAGAGTTTTTATGTGAATTATGTTGTAAAGCGTTCAAATTGAAGAAGCACATGCGACAACATATGCGAACACACTCGAAGGATAAACCAAGTTTCGGTTATACCTTCGGTGACGTCATAATAGAGAAAGAAGCGGATAATGAGCCGGGTGTATCAAAAGAGCCGAAAGCAGTGAAAAACAAGACAATAACCAAAATAGAACGCGCCAAAATCAACCCTGAACCGATAAGAAAGATAAAACTCATAAAAAAGAAAGTATATCTCGGAAGTGATAGCTCTGAGATATATAAACACCGACACAACATTCGCTCAATACTGCAGTATTCAAACTCGACACCGATAGGGCAACATGACGTAGGGACAAGCTTCGTTTGCGGATTCTGCTTAGACTCCTTTCACAAACCAAGGGATCTCAAAACCCACATAATTAACGAACATAATCAGGACAAACACAATTATACACAAATCATGAAACAACTTACGGGCTTAGTAGTGAAGCTTGACATTACGGGTCTGCACTGCACTATCTGCAAAACTGAACTCAACACGATGGAGGAACTGATTGATCACTTAAATCAGTCGCACGATAAGCGCTTATACACCGATATCAAGAATCAGATAGTGTGCTTCAAGCTCGATGGAGATTTGTTTAAATGCATGTTTTGCCAAGCCGAGTTTATTACATTCAGAGCTTTACGTATACATGTAAACCAGCATTACAGGAACTTCATATGTGAGGTTTGTGCGGCTGGTTTCGTTAACCAACACATGTTTGATGTGCATACGAAAACACATATCATCGGCAAATTCAAATGCCCTTCGTGTGACAAAATATGCGAAACGAAAAGCAAACTGAGGTGGCATGCAAGGTTGCACCCACTTCAAGGTCATAGGTTCGGTTGTAGTCAATGCGGAGAGagatttgaaacaaaaaagttaaaaaaagatCACATGAAGACAATGCATGGCGCTATATATGAATACAAATGTCCGACTTGTGATAGAAAGTTCAATAGTACAGCGAGTCTTTGGGCGCATAAGAGACGAGATCATTTAAAGGAGCGCAAATTTGTATGCGAGCATTGTGATATGAGGTTCTTTACTAAAGCAGAAAGATCTGTTCATCTGGTGTCTCACACTGATGTGAGAAAATTTTTATGTGAGATATGTTGTAAAGCGTTTAAATTGAAAAAGCATTTGCGACAGCATATGCGGACGCACTTGAACGATAGACCGAGTCGTTCAAATGTGAAGTAA
Protein Sequence
MRKRDLTITGIGVAYVFGCIGKNDRRHIRANDVTCTQIRVTDRCSPLHFRWVPIEVCYVKLNEEVGFVCTFADVNIKTEEDSGSGLSNRPQVKINKRIIKIEPAKTNPEPIREIKLVKKKVIYLGKDSPVILKHRHNIRSILQYSNSTPIGHHNVGTGFACGFCEESFHKPGDLKTHIIDEHNQDKHNYTQIMKPLPALVVKLDITGLHCNICKTEFTTIEELIEHLNQTHDKRLYTDIKNQIVCFKLDGDSLKCMFCQAEFITFRALHLHVNHHCRNFVCEICAAGFVNQVMFDHHTKTHIIGEFKCRSCDKKFETKSKLMWHARLHTPQGPKFSCVQCGERFETNKLRKDHMKTMHGAKYEYKCPTCDKKFNSTVTLWTHKRRDHLLERKFECEHCDMRFFSKQEKDNHLSTHKDAREFLCFVCTVGDVKIKKEEDNKSGLSKRPKVTINKKKIKIESAETNPEPPREIKLVKKKIIFLGKERPLLHKHRYNIRTILQYSNATPMGNYNAGTGFACGFCEESFHKAGDLKTHTIADHNQDKPNFIQIMKPLADLVVKLDISCLHCNICKTELNTIEELIDHLNQTHDKRLHTDIKNQILCFKFDGDSFKCMFCKVNFITFRALQIHVTQHYRNFICEICAAGFVNQTMFDKHMKAHIIGEFKCRSCDKKFETKSKLMWHERSHAPHSPKFNCVQCGEQFETNKLKKDHMRTMHGAKYEYNCPTCDKQFTNKTSLWTHRRRDHLLERKFECEHCDMRFFSKAERDDHMVTHTDLREFLCELCCKAFKLKKHMRQHMRTHSKDKPSFGYTFGDVIIEKEADNEPGVSKEPKAVKNKTITKIERAKINPEPIRKIKLIKKKVYLGSDSSEIYKHRHNIRSILQYSNSTPIGQHDVGTSFVCGFCLDSFHKPRDLKTHIINEHNQDKHNYTQIMKQLTGLVVKLDITGLHCTICKTELNTMEELIDHLNQSHDKRLYTDIKNQIVCFKLDGDLFKCMFCQAEFITFRALRIHVNQHYRNFICEVCAAGFVNQHMFDVHTKTHIIGKFKCPSCDKICETKSKLRWHARLHPLQGHRFGCSQCGERFETKKLKKDHMKTMHGAIYEYKCPTCDRKFNSTASLWAHKRRDHLKERKFVCEHCDMRFFTKAERSVHLVSHTDVRKFLCEICCKAFKLKKHLRQHMRTHLNDRPSRSNVK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-