Hchr026867.1
Basic Information
- Insect
- Hemistola chrysoprasaria
- Gene Symbol
- -
- Assembly
- GCA_947063395.1
- Location
- OX346738.1:891967-894258[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 2.5e-06 0.0002 22.3 4.4 1 23 6 29 6 29 0.95 2 20 0.01 0.82 10.9 0.8 2 23 35 57 34 57 0.94 3 20 1.1e-05 0.00085 20.3 0.2 2 23 66 88 66 88 0.97 4 20 9.8e-06 0.00079 20.4 1.6 2 23 97 119 96 119 0.95 5 20 5.7e-05 0.0046 18.0 0.2 2 23 127 149 127 149 0.94 6 20 9.8e-07 7.9e-05 23.6 1.9 2 23 157 179 156 179 0.96 7 20 9.7e-07 7.8e-05 23.6 4.7 1 23 185 208 185 208 0.98 8 20 0.00014 0.012 16.8 0.1 1 23 242 265 242 265 0.96 9 20 0.0023 0.18 13.0 1.0 1 23 288 311 288 311 0.98 10 20 0.11 8.9 7.7 0.8 2 21 319 338 318 339 0.94 11 20 0.0032 0.26 12.5 4.2 2 23 348 370 348 370 0.95 12 20 0.0054 0.43 11.8 3.6 2 23 394 416 393 416 0.95 13 20 5.2e-05 0.0042 18.1 0.5 2 23 423 445 423 445 0.96 14 20 7e-05 0.0056 17.7 2.3 2 23 452 474 451 474 0.94 15 20 0.0075 0.6 11.4 2.2 1 23 480 503 480 503 0.97 16 20 0.19 15 6.9 7.1 2 23 511 533 511 533 0.95 17 20 0.00038 0.031 15.4 0.1 1 23 540 563 540 563 0.97 18 20 0.17 13 7.1 2.0 1 19 570 588 570 593 0.86 19 20 0.017 1.4 10.2 2.7 3 23 608 629 607 629 0.91 20 20 7.3 5.9e+02 1.9 0.4 1 10 679 688 679 691 0.90
Sequence Information
- Coding Sequence
- ATGTCGCTAAGCGACTACATCTGCGACTATTGCAGTCGGTCATTCACGAGAAAGTACAACCTTCAAACTCATATGGAAAACTGTCATATCAACTCTTCATGCCACTGCGAGATCTGTGAACAGCAGTTCGGAAGCCCAGCTGGCTTGCAACTTCACCTATCGCGTGGCCACAACAGAAATGGCCAGCCTTACCCTGAATGCGACATATGTGGCAGAATCTTTACGagaaaacaaaacatcatgTCGCATATGATCACCGTTCATTTACAAGGCGTAGGACCGGAGATTCGCTGCAGGATTTGCTCGAAAACTTTCACTACGGAAAGAAATTTGAAACGGCATGTAAAGTTGCTGCATAACCCTGATATAGAGTACCCAACGTGTGATCTTTGTAATAAAGCctttaaaagtaaaaatacgTTAGTAGCTCACATACAAGCAGCGCATATTCTAAACGAAAACTCTATAAAATGCCACCTTTGTGACAAAGTATACACTAATAACAGAAACTTAAAAAGGCATATAGAAATGCTGCACAAAGCTAAAGAAGATCACAGATGTCATATTTGCCCAAAAGTCTACACATCTAATCAGAGTTTAAGAAGACACATTCGAACGACGCATAACAGCGAAGACGAAGTTCAATGCGAAGTACAATTCAGTGAAGTTAATGAAGAAAACATTAATTTGAGCGACAATTCCGTCGAATCAGATTTTGACGAATTTACGTGCGAGACTTGCAACGAGTCATTCGCCGATGAGCCGTCGTTGCGACAACACGTAAAAGAGGAACATTCGTTTGAAGTGTTTTATGACTACTGTCGAAAGGTGCTACAAAAACAAACCAAGAACAAGCAAGTTTTCAAATGTGAGTtttgtttcataggattttttaGCGTTTACGAGCTAAAAGACCATATGAAAGTTAATCACGATACGGAATACAATTTGTCCACGTGCAATGTATGCTTTAGTAAGTTTTATAGTAAAGATACTCTGTACGAACATAAGAGGATATGTTTGCCGCCGCCAGACGTGAACTCTTGTAGTCACTGCGATAAACTTTTCACTGACAAGTCGAGCTTAAAATTTCACACGAGAATATTCCATCCTCAAGCTCAAATTGCCGATTCTAACATCACTTCGACAAAAACTGACGAGTTAGACTCAAATTCTGTTAGATGCGTGCACTGCGATAGGATCTACTATAGCGAAAGATCTCTGAAACATCATATAAAATTGAAACATACCACTGATGAGGCAGAAGAATGTGGATATTGCGGAAAAATCTGCAATAATAAGTACTACTTAGCGTCACATATTAAAATAGTCCACAGCAATGTCGCTCTATCAAAATGCGATTTTTGTGATAAAATGTTTAAGTCCAAGCGAAATATTCGACGCCATATTGAATACACACACATGGGCATGCAAAGATACAAATGTATTGAGTGTGAAACGCTAtttaaagagaaaagaagtttACGAAAACACGTAAGAACGAAGCATCCCAACTCGACTACGTTTCCACAATGCCATATATGTCATAAGAGATTCGAGTCTGCGAAATCTTGTAAAATACACCTAAAGTTGCTACACTCTTTCAACATGAACACTTATCCTTGCGATTTGTGTTCAGTTTCGTTTGGATCGAAAGAGGCGTTGAAAATTCACTTAGAAACCAAGCATTTAGCTGAAGACGAAATATACAAATGTGAAGAATGCAACTTAGTTTTTAAAGGGTCTATAAAGTTCGATCAGCACAACGATTTGTGTCATGGAAAATCCGATTCCACAGCCAAGCAGAAGGTTCTTCCAAGATGTATAATTTGCATGAAAGATTTTAGCACACGAAAAACTTTGAAGCGACACATTAAGAAGTTCCATGCGGAATTTCAATCCGAAGACTTGGCAAACTTTGGCTGCCGAAAACGCGATTTCAACGTCGACTGCGCAGAATGCATCAAGAACTTCAGCAATGATTATAACGTAGCTGTTTACAATAAGGTCAAATCCATAAAAGATTCAGTAGTTTTCAAATGCGAGACGTGTAAATCGTCGTTTAACGCGTTAGAATTTGCCATTCAGCGACACAAGTTAATCAATACTGACGGTAGTAAATCAAAGTTGATTTTGAGCGATCTATGCACGACTCAGATGTCTGACGACGAAGCTAAACATTCAGGGCTTGGATCGTTACATGAGTTTATGGAACCAGAAAGTACCACTTGCGATGTCAAAGTCGAACCAGCAGAAATGGTGGATGTAAAAGCAGAACCGATGTCGCCTTAA
- Protein Sequence
- MSLSDYICDYCSRSFTRKYNLQTHMENCHINSSCHCEICEQQFGSPAGLQLHLSRGHNRNGQPYPECDICGRIFTRKQNIMSHMITVHLQGVGPEIRCRICSKTFTTERNLKRHVKLLHNPDIEYPTCDLCNKAFKSKNTLVAHIQAAHILNENSIKCHLCDKVYTNNRNLKRHIEMLHKAKEDHRCHICPKVYTSNQSLRRHIRTTHNSEDEVQCEVQFSEVNEENINLSDNSVESDFDEFTCETCNESFADEPSLRQHVKEEHSFEVFYDYCRKVLQKQTKNKQVFKCEFCFIGFFSVYELKDHMKVNHDTEYNLSTCNVCFSKFYSKDTLYEHKRICLPPPDVNSCSHCDKLFTDKSSLKFHTRIFHPQAQIADSNITSTKTDELDSNSVRCVHCDRIYYSERSLKHHIKLKHTTDEAEECGYCGKICNNKYYLASHIKIVHSNVALSKCDFCDKMFKSKRNIRRHIEYTHMGMQRYKCIECETLFKEKRSLRKHVRTKHPNSTTFPQCHICHKRFESAKSCKIHLKLLHSFNMNTYPCDLCSVSFGSKEALKIHLETKHLAEDEIYKCEECNLVFKGSIKFDQHNDLCHGKSDSTAKQKVLPRCIICMKDFSTRKTLKRHIKKFHAEFQSEDLANFGCRKRDFNVDCAECIKNFSNDYNVAVYNKVKSIKDSVVFKCETCKSSFNALEFAIQRHKLINTDGSKSKLILSDLCTTQMSDDEAKHSGLGSLHEFMEPESTTCDVKVEPAEMVDVKAEPMSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00791403;
- 90% Identity
- -
- 80% Identity
- -