Hchr009953.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hemistola chrysoprasaria
Gene Symbol
-
Assembly
GCA_947063395.1
Location
OX346717.1:11198148-11220335[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 3e-05 0.0024 18.9 2.2 1 23 416 438 416 438 0.97
2 20 0.0026 0.21 12.8 0.9 1 20 444 463 444 466 0.94
3 20 2.3e-05 0.0018 19.3 5.6 1 23 485 507 485 507 0.98
4 20 0.0001 0.0084 17.2 4.1 1 23 513 535 513 535 0.99
5 20 4e-05 0.0032 18.5 5.3 1 23 541 563 541 563 0.97
6 20 1.9e-06 0.00015 22.7 5.5 1 23 569 591 569 591 0.98
7 20 1.9e-06 0.00015 22.7 2.7 1 23 597 619 597 619 0.97
8 20 0.00011 0.0088 17.1 6.7 1 23 625 647 625 647 0.97
9 20 0.00011 0.0087 17.1 6.5 1 23 653 675 653 675 0.97
10 20 5.2e-07 4.2e-05 24.4 1.9 1 23 681 703 681 703 0.98
11 20 5.4e-05 0.0043 18.1 7.9 1 23 709 731 709 731 0.98
12 20 2.7e-05 0.0022 19.0 6.6 1 23 737 759 737 759 0.98
13 20 3.1e-06 0.00025 22.0 5.6 1 23 765 787 765 787 0.98
14 20 1.1e-05 0.00088 20.3 5.2 1 23 793 815 793 815 0.96
15 20 1.2e-05 0.00095 20.2 5.2 1 23 821 843 821 843 0.98
16 20 3.3e-06 0.00026 21.9 6.0 1 23 849 871 849 871 0.98
17 20 6.4e-05 0.0051 17.9 7.9 1 23 877 899 877 899 0.97
18 20 2.6e-06 0.00021 22.2 5.1 1 23 905 927 905 927 0.98
19 20 0.00036 0.029 15.5 0.3 1 23 934 956 934 956 0.97
20 20 0.029 2.3 9.5 5.4 1 23 966 988 966 988 0.99

Sequence Information

Coding Sequence
ATGAATCCGGATCACCACAATATCAACACGGGTGGTGGTCAGCCCCCTGGGAGTTCGGAGTCTCAGGGACAGAGAGTTCCGGGGGGTCAGCAGCAGCAAGTTAGCCTGCCTGCGACGACCTCTGCTACAGACTTGCGTGTGAACACGGCAGCAGTGAATGTGGCTTTGTCAAGTGTCGCAAAGTATTGGGTGTTTACGAATTTATTCCCTGGACCTATACCACAAGTATCTGTGTATGGATTGCCTGGAACTAGAATAGAGAATGGAAAACCTGTGCagGATCTAGGTCAACATGCAAGCATACTGAATGGGGATCCAAACATAATCCTGGGTCACCATGGAGGTCAACAACAGGTCACTGTGTCCGGGGCAGGGGGTCAGCAGATACCTGTCTCTCAAATTATTGCCACACAATCTGCTGGACAAACACATGAAGGTTTGGTGGGTCACACGCACAGCCAGCAGGATCTGTCGGCGGGTGGAGGCCCGTCAGTGTCAGGCGGGCAAGTCTCTCACCAGGTACCCAATAACCGGGTCGAATTTGTTCAACACCATAACATTGATATGGGTCATCACTCTCAACAACACCTAATGCAGCAACAACTGATGACTGCGCGCCCTGACCACAGCAACCAGCAGATTCAGCTGACAGTGAGTGAAGACGGCATTGTCACGGTAGTGGAGCCAAGTAGCAGTAAGATGGTGGATAAGGATGAGCTGCATGAGACCATCAAACTGCCTACAGACCATACGCTTACTGTGCACCAGTTGCAACAAATTGTTGGACAGcagCTGGGTTCCCAAGTACTAGAAAATGTGGTCCGCATAGAGCAAGCGACTGGTGAACCAGCAAACATTTTGGTGACACATAACGCGGACGGGACCACATCCATAGAGGCGAGCGCCTCCGACCCGCTAGCTATTGTCAAGGATGAGAAAACACAGTCCAAAATGGAGACCGCACAGTTCGCCATACCTACTGATATAAAAGACATCAAGGGAATTGATTTGAAGAGTGTAGGCGCCGTGGGCATGGAAGGCGCAGTGGTGAAGATATCGACAGGCGCCGACGACATGCACGCCATGTACAAAGTTAACGTTGAAGATCTCTCGCAGCTGCTCGCTTATCATGAAGTCTTCGGCAAACTTAATACTGATGGACAGACGCAAAATAAGAATGAAATAGAAATAGAAGTGCCAGGAACGAGTCAAGCTATGTCTGAAGCGGAGTCGTCTCCAGGGCATCACTCTTGCGATATATGCGGGAAAGTGTTCCAGTTTAGATATCAACTCATTGTACACAGacGATATCACGGCGAAAGTAAACCGTACTCGTGTCAAGTTTGCGGCTCATCATTTGCCAACCCTGTTGAACTGTCAAGACATGGGAAATGCCATCTTGCCGGGGATCCAGCCGAAAGGCACGCCAAAAGGGTAGCCCAAGACAAACCTTATGCCTGCACCACTTGCCATAAAACATTCTCGAGGAAAGAACATTTGGACAACCATGTCCGGAGTCACACTGGGGAGACACCTTATAGATGTGAATTTTGCGCCAAAACGTTTACTCGCAAGGAGCACATGGTGAACCACGTCCGCAAGCACACCGGCGAGACGCCGCATCGATGCGACATTTGTAAGAAAAGCTTCACCAGGAAGGAACACTTCATGAACCATGTTATGTGGCATACAGGTGAAACGCCACACCAATGCCTAGTATGTGGCAAGAAGTACACTAGAAAGGAGCACTTGAATAATCATATGAGATCGCATACGAATGACACCCCATTTAGATGCGAAATGTGTGGGAAGTCTTTCACTAGAAAGGAGCACTACAGTAATCACATTTTGTGGCATACTGGTGAAACGCCCCACCGTTGCGACTTCTGTTCGAAAACGTTCACACGCAAAGAGCACCTGTTAAACCATGTTCGACAACACACGGGCGAGTCTCCACATCGTTGCAACTTCTGTTCCAAGTCGTTCACTCGACGGGAACATTTGGTCAACCATGTGCGGCAACACACAGGGGAGACGCCCTTCCAATGTGGATACTGCCCTAAAGCTTTCACTAGGAAGGACCATCTCGTGAACCACGTCCGGCAGCACACAGGAGAATCGCCCCACAAATGTTCGTTCTGCACGAAGTCGTTCACTCGCAAGGAGCACCTCACGAACCATGTGCGACAACACACGGGAGAATCTCCGCATCGGTGCACTTACTGCGCCAAGTCTTTCACTAGGAAGGAACATTTGACCAATCATGTTAGACAACACACGGGTGAAACGCCACACAAGTGCACATACTGCCCGCGGGCGTTCTCGCGCAAGGAACACTTGAACAATCATCTGCGTCAACACACCGGCGTCACGCCGCACGCCTGCTCGTACTGTAACAAGACCTTTACTAGGAAGGAGCATCTCGTCAACCATGTGCGGCAACACACCGGGGAAACTCCGTTCAAGTGCACGTTCTGTTCGAAGTCGTTCTCTCGCAAGGAGCACCTCACGAATCACGTGAACCTGCATACTGGCGAGACGCCGCATAAATGTCCATTCTGCACTAAGACCTTCTCCAGGAAAGAACACCTTACTAATCATGTCAGAATCCATACAGGAGAATCGCCTCACCGTTGTGATTTCTGCCAGAAGACGTTCACGCGTAAAGAACATTTAACGAACCATTTGAAGCAACACACGGGCGACGCTACACACACATGCAAAGTCTGCTCGAAGCCTTTTACGAGGAAAGAGCATCTTGTTAATCATATGAGATCCCACACATGTGGCGAAAGGCCGTACAGTTGCGGGGAGTGCGGCAAGTCATTCCCACTCAAGGGGAATCTAATGTTCCATGAGCGTTCGCATCAGAAGTCCGGATCTGGTGCGAAACCGTTTCGGTGTGATGTATGCTCTAAGGACTTCATGTGCAAAGGGCATCTAATATCGCACCGTCGCACGCACCCGGAGGCAGGCGAGGCTCCGGCGGCCGCGCCGAGAACTGACGCCGAAGCGGCTGAATGTACACCCAAATGTGTGAAGATTGAACACGATCCCCTCGCGTTGGACAAACCTAAAATTGAAGAAGTTGGACCAACTGAGAACAGCATAGTTCCGCAAACGTCGCCTAATCCTACCACTGTGATGCAGATAGCCAATCAACAGGTCCGAGCAGTTCCCACATCAAGTGGCGCcggattatcatcatcagcaacGTTCACCCACACGGTGACGTCACAGCACCACGCCGGCACCGCCATCGGCCACCATCCAGTCAGTGTCACCTACTAG
Protein Sequence
MNPDHHNINTGGGQPPGSSESQGQRVPGGQQQQVSLPATTSATDLRVNTAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPGTRIENGKPVQDLGQHASILNGDPNIILGHHGGQQQVTVSGAGGQQIPVSQIIATQSAGQTHEGLVGHTHSQQDLSAGGGPSVSGGQVSHQVPNNRVEFVQHHNIDMGHHSQQHLMQQQLMTARPDHSNQQIQLTVSEDGIVTVVEPSSSKMVDKDELHETIKLPTDHTLTVHQLQQIVGQQLGSQVLENVVRIEQATGEPANILVTHNADGTTSIEASASDPLAIVKDEKTQSKMETAQFAIPTDIKDIKGIDLKSVGAVGMEGAVVKISTGADDMHAMYKVNVEDLSQLLAYHEVFGKLNTDGQTQNKNEIEIEVPGTSQAMSEAESSPGHHSCDICGKVFQFRYQLIVHRRYHGESKPYSCQVCGSSFANPVELSRHGKCHLAGDPAERHAKRVAQDKPYACTTCHKTFSRKEHLDNHVRSHTGETPYRCEFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHQCLVCGKKYTRKEHLNNHMRSHTNDTPFRCEMCGKSFTRKEHYSNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLTNHVRQHTGETPHKCTYCPRAFSRKEHLNNHLRQHTGVTPHACSYCNKTFTRKEHLVNHVRQHTGETPFKCTFCSKSFSRKEHLTNHVNLHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCDFCQKTFTRKEHLTNHLKQHTGDATHTCKVCSKPFTRKEHLVNHMRSHTCGERPYSCGECGKSFPLKGNLMFHERSHQKSGSGAKPFRCDVCSKDFMCKGHLISHRRTHPEAGEAPAAAPRTDAEAAECTPKCVKIEHDPLALDKPKIEEVGPTENSIVPQTSPNPTTVMQIANQQVRAVPTSSGAGLSSSATFTHTVTSQHHAGTAIGHHPVSVTY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01030446;
90% Identity
-
80% Identity
-