Hchr014623.1
Basic Information
- Insect
- Hemistola chrysoprasaria
- Gene Symbol
- clz9
- Assembly
- GCA_947063395.1
- Location
- OX346722.1:8001469-8003799[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6e-07 0.00011 22.6 0.0 1 44 18 61 18 62 0.89 2 2 7.1 4.6e+03 -1.9 0.0 24 37 84 98 82 103 0.82
Sequence Information
- Coding Sequence
- ATGCCACGAGATTATAATAGGCCTATTGGATGCAGGTCTTACAAAAATTATACTGAAGAAACATTACAAAACATTTTAGAAGAAATTAAATCAGGTAAAATCTCAACGCGGGCCGCATCCGAAAAATATGGCATTCACAGAAACACTTTATCATCAAAACTGAAAGGCAAAGCACCGCTAAAACACGGAGGTCAAACTGTGTTCATTGAAACGGAAGAACTTGCTTTGATAtcacacattactgctttgtcAGCCTTTGGATTTCCAATAACAACAATAGAGCTGCGCTACATTGCCAAGTCGTATTTGGAGAAACAGGGTAGAAAGGTGCCGAAATTCACTAACAATTTGCCAGGCAAGGAGTGGGTGCATTCATTTTTAAAGCGTCATAAGTCACTGTTGTCAAATCGAGTAGCTAGGAATATAACACATGGACGAGCGGAAATAAATGAAGTTATTGTTAACGAGTTTTTTGATAACTACGAAAAAGAAACGGTAAATGTCCCGGACACCAACATTTGGAATTACGACGAAACATGTTTAGTTGATGACCCAGGCTCGATAAAAGTTCTGACTAGAAGAGGGACAAAATATCCCGAGACCATTAAAAACTCTTCTAAGGCAGCAACATCAGTAATGCTGTGCGGGAACGCAGCTGGCGAATTAGCTCCTGTATACGTAGTATATAAAGCTGAGGATATGTGGGGGACGTGGGCAGAAAATGGTCCTTCACAAGCACGATATAATCGAACTAAATCTGGTTGGTTTGACGCACGATGCTTTGAGGACTGGTTCGAATACACGATGCTGCCTATACTTAAAAAACAGACTGGTAAAAAAGTTTTGATTGGAGATAATCTCAGCTCGCACATAAGCCCGCACGTTATCTCTTTATGTGAAACCAACAATATTGCGTTTATTGCTCTGCCTCCAAATGCTACGCACTTGCTCCAACCACTGGATGTGGCGTATTTTCGGCCAATGAAAATAGCATGGAGGAAGATATTAAATGAATGGAAAAATAATACACGTAATAGTAGAAGCTCCAGTGTGCCGAAAGATCAGATCCCGATGCTCTTAAAACAAATGTTCCAAGAAATGGAAGCAAACtcttcacaaaatttaaaatgcgGTTTTAGAAAGTGTGGTTTGTTCCCCTTAAACCGATATCCTGTATTGCAAAGAATGCCAAACCAACAGCTGGAAGCTACTGTACCAGTTCGTGAATTATTAGGCGAGAGCTTTCTAGAGAATTTAAGATCTACAAGAGTACAAGTCACTGAGACAAGGCCTTATCGAAGAAGGAAACGCGTGAACGTTCCCGCAGGCAGAGGTATTACAGCTGCAGATTTAGTAGAAGAAGAAACAACAGGTCGTGCTATCATTtcgtctccacttcgctcggatTCTGATCAATCTTCAGAATTTGTTATGGAGGCACCAGTAACGTCAAGGAACATCGAGAATGTAGATTCCAACCAGGAGACAGAAATAGTAGCTCATACTATCCCCCCATCATTTACCCGCTTGTCGTCTTTGGAGCTTCGACATAGCCTGTCATCAACATTGACGACCAATATCTCATCGCAGTCTGATGAActtataaatcataaaaatacaatCAATGCCTCCGAGCGCGAAATAGAAAGTATAACTGGGACTATCTTCTCATCTTCAGTCCAATCAGATCAGTCAATCGCAGACAAAAAAGATGGGGAGCAATTTCATGGCACTTTGACAGCAGTAAGAAACATTGAGCCGCAACCAGGTACATCGTTTGGGGGGGCACCAAAACCTAAACCTAACAAATCTCTGCCGAGACTCAAAAAATCAGTAAAAGAACCTGTTAAATTAAAAggcaaaaatattgttaaatccTGTaacaagaaaaagaaaatatacaGAAGTTCAGACGATGACAGTACAAGTGCGTCGTCACATATATCATTCCAAGAAAGTGACTGTAGTACTAAATGGTGCGATTTAGATGACGAAGAGATACAGGGAGAAAATGACAAAGAAAACAATAGCAGCATAGAGAACTTGAAAGAAAATCAGGAAGACTGTAATAAATCGTTAAATGTTGAGGAAGGGAGTTATGTCCTTGTTCAATATGATGAAAACGTTTATCCTGGAAAAATATTGAGAAAGTTACCTGAATCGGCTCTTGTGTCTGCCATGCAAAAAGCTGGACATAACATCTGGAAATGGCCCTCCAAGCCTGATATAATTTGGTACGACAACTCAAAGATAATTCAGTCGATAAACGAACCAGTTCTTATCTCAAAAAGAGGTTTATTCAGAATTACTGAATTGGTAGAGttagaataa
- Protein Sequence
- MPRDYNRPIGCRSYKNYTEETLQNILEEIKSGKISTRAASEKYGIHRNTLSSKLKGKAPLKHGGQTVFIETEELALISHITALSAFGFPITTIELRYIAKSYLEKQGRKVPKFTNNLPGKEWVHSFLKRHKSLLSNRVARNITHGRAEINEVIVNEFFDNYEKETVNVPDTNIWNYDETCLVDDPGSIKVLTRRGTKYPETIKNSSKAATSVMLCGNAAGELAPVYVVYKAEDMWGTWAENGPSQARYNRTKSGWFDARCFEDWFEYTMLPILKKQTGKKVLIGDNLSSHISPHVISLCETNNIAFIALPPNATHLLQPLDVAYFRPMKIAWRKILNEWKNNTRNSRSSSVPKDQIPMLLKQMFQEMEANSSQNLKCGFRKCGLFPLNRYPVLQRMPNQQLEATVPVRELLGESFLENLRSTRVQVTETRPYRRRKRVNVPAGRGITAADLVEEETTGRAIISSPLRSDSDQSSEFVMEAPVTSRNIENVDSNQETEIVAHTIPPSFTRLSSLELRHSLSSTLTTNISSQSDELINHKNTINASEREIESITGTIFSSSVQSDQSIADKKDGEQFHGTLTAVRNIEPQPGTSFGGAPKPKPNKSLPRLKKSVKEPVKLKGKNIVKSCNKKKKIYRSSDDDSTSASSHISFQESDCSTKWCDLDDEEIQGENDKENNSSIENLKENQEDCNKSLNVEEGSYVLVQYDENVYPGKILRKLPESALVSAMQKAGHNIWKWPSKPDIIWYDNSKIIQSINEPVLISKRGLFRITELVELE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -