Hchr018922.1
Basic Information
- Insect
- Hemistola chrysoprasaria
- Gene Symbol
- -
- Assembly
- GCA_947063395.1
- Location
- OX346727.1:2433326-2436472[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.6 3e+03 -1.3 0.1 32 43 26 37 26 38 0.86 2 2 3.1e-11 2e-08 34.5 0.0 2 39 91 128 90 134 0.88
Sequence Information
- Coding Sequence
- ATGCTGGGGGAATCTGATTCAACTCTGTTCCTCAGCATTTTTGGAGCTGTTGGGTTCCGGGCTGGTGGTTGGCTAACTCTGGTTGAAAGATACTCCACGACGTACTCGACAGCTCATGTTTATCATCGACCAGGGTTGTCATCCATTAGCACTGAGAGAAAATTCGCTGACCCAATGCTTGACCACTTGCTTTGCTTTGGTGTGGGATCAAAGATTGTTGTTTTTTACACAGTCAAGAAGAAAGGAAATGTTAGAAATCTGCGCTACCCAGAGGCGGCCATGCAATCAGCTATAAAAGCAGTTCGCGAAGGTCGTTTCAAGTTAAGAGAAGCAGGACGACATTATGGTGTGCCACACAACACGCTTAGTAACAAATTAAAAGGTGTGGTGCCAGAATCAAGAAAGATGAGGAAATTAGAGCCAAAAAGATTCAAAAAGCACCAAAAGCGAAGAATTCTAAACAACCCATTGAAAGAAAATTGA
- Protein Sequence
- MLGESDSTLFLSIFGAVGFRAGGWLTLVERYSTTYSTAHVYHRPGLSSISTERKFADPMLDHLLCFGVGSKIVVFYTVKKKGNVRNLRYPEAAMQSAIKAVREGRFKLREAGRHYGVPHNTLSNKLKGVVPESRKMRKLEPKRFKKHQKRRILNNPLKEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -