Basic Information

Insect: Hemicrepidius niger
Gene Symbol: -
Assembly: GCA_963082805.1
Location: OY720162.1:2999247-3001370[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0045 0.44 12.2 1.2 1 23 82 104 82 104 0.97

2 15 0.0089 0.88 11.3 0.2 3 23 139 159 137 159 0.96

3 15 0.012 1.2 10.9 1.8 1 23 165 187 165 187 0.98

4 15 0.027 2.7 9.7 3.7 1 23 193 215 193 215 0.98

5 15 0.84 84 5.0 3.2 1 23 221 243 221 243 0.96

6 15 0.0098 0.98 11.1 0.6 1 23 257 279 257 279 0.99

7 15 0.021 2.1 10.1 0.1 1 23 285 307 285 307 0.98

8 15 2.6 2.6e+02 3.5 1.8 1 23 313 335 313 335 0.95

9 15 5e-05 0.005 18.3 3.4 1 23 369 391 369 391 0.98

10 15 1.9 1.9e+02 3.9 4.6 1 23 525 547 525 547 0.97

11 15 0.083 8.3 8.2 0.1 1 23 553 575 553 575 0.96

12 15 0.45 45 5.9 2.5 1 23 581 603 581 603 0.98

13 15 0.31 31 6.4 0.3 1 23 609 631 609 631 0.96

14 15 0.019 1.9 10.2 9.3 1 23 637 659 637 659 0.98

15 15 3.9e-05 0.0039 18.7 2.9 1 23 665 687 665 687 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0045	0.44	12.2	1.2	1	23	82	104	82	104	0.97
2	15	0.0089	0.88	11.3	0.2	3	23	139	159	137	159	0.96
3	15	0.012	1.2	10.9	1.8	1	23	165	187	165	187	0.98
4	15	0.027	2.7	9.7	3.7	1	23	193	215	193	215	0.98
5	15	0.84	84	5.0	3.2	1	23	221	243	221	243	0.96
6	15	0.0098	0.98	11.1	0.6	1	23	257	279	257	279	0.99
7	15	0.021	2.1	10.1	0.1	1	23	285	307	285	307	0.98
8	15	2.6	2.6e+02	3.5	1.8	1	23	313	335	313	335	0.95
9	15	5e-05	0.005	18.3	3.4	1	23	369	391	369	391	0.98
10	15	1.9	1.9e+02	3.9	4.6	1	23	525	547	525	547	0.97
11	15	0.083	8.3	8.2	0.1	1	23	553	575	553	575	0.96
12	15	0.45	45	5.9	2.5	1	23	581	603	581	603	0.98
13	15	0.31	31	6.4	0.3	1	23	609	631	609	631	0.96
14	15	0.019	1.9	10.2	9.3	1	23	637	659	637	659	0.98
15	15	3.9e-05	0.0039	18.7	2.9	1	23	665	687	665	687	0.98

Sequence Information

Coding Sequence: atggaTGTAGAATCAGTTGATATTATTGTAAAACAAGAAACGATGGAGTTGGATGAAAACAAACCAACCCCGGAAGGTCATTTTGCATTAAATCCATCCAAATCCGATGACTTAATCAAATTTATTGTAGATTTGGCATCTAAAACTCCAAATGAAGAAGTCACAGTGGAAATTGATGCAGAAGCAATCGAAATGATTATGGAATCACAAAATGTTACAAACACGGACGGTGGAGATAAAACATTTAACTGTGACAAATGTAAATACGAAGCTACTTCCAAAACTAGATTAGAACGTCACATGCAAGCACATGATACAGAGATGGATGTTAAAAACATGATTCAAGATGAAGAAAGTGAGGAAAGTGAAGGGGAGGTCAAACCCCAACAAAATAAACCCAAGAAACTTTACGGGTGTGAAGAATGTGACTTTACAAGTCCCCAAAAAGGTGGTTTGAAACGCCACAGTTTATCTCATAACTCGGATAAATTCTTTAAATGCACCGAATGTGATTTCCAAACCCAATACAAAGGATACTTGGAAAAGCATTCGATAACTCATTCCAAAGAAAAACCATTTCAGTGTACCCAATGTGATTACACAACATCCTGGAAACAATGCTTGACCCAACATATGGTTACGCACAATAAAAAAGAACCGTTTAAATGCGACAAATGTGATTTTACATCTACTAAAAAACGTATCTACGGAACACATTTAAAAACCCACGAAGTATCAGCCTTGGATGCAGAATACGACccaaaaccatttaaatgtgaatTCTGTACGTACGAAACTGCTTGGAAATCAGCCCTTAGGGCTCATTTAAAGACGCATACGGATGAAAAAGATTACAACTGTGAAGTTTGTGGCTTCACAACGGCTTATAAACGTGTCTTGGATTGGCATTTAAATATCCACACTGGTGAGAAGACTTTTAAATGTGACCTATGTGATTTTAAAAGTGTTTGGAAACGTTCCGTTCAGATGCATAAGAAAACCCATAACGAAGAGAAACCTTACAAATGTGAGTTTTGTAACTTCAGAAGTGCTTGGAGGCGTGCTTTAGTCCTTCACAGACATCTCCACACCGGTGAGAAACGCTTCAGTTGTGCTTTATGTGATTATAAAACCTCCCATAACAGTAATTTTGCTAAACACATGAGAtcgcacactggggaaaagccttccaaaggaaaaaaagctaaaaaaattgaagataaaGAACCTTTGGTTTTTGAGGATTGGATCGAACACCAAGAAGATGAATTGACGCAAAATGTCGAACCTTCTCAAAATTTAGGCGGGAATATTGAAATCCAATCTTTAGCCGCTATTACTTCCATTGTACCCGAAACAGTACTACAGGAAAATTCCATTAAGGAAGCTAACCCAGTTTCTGTAGAAGAAGAAGAGGTGGAAACAATGGAGGAGGATGTTTTTGTTAAACCCGAGTGTGCAACTGGGGAAGAGCCTTTTCAAAAATTGCCTAAACCCGAGTGTGTAACTGGGGAAGAGCCTTTTCAAAAATCTCTTAAACCCGACCAAAAAAACCTTAAATCGAACAAAATATACAAATGTAAAGAATGTGAATACAGTACAGTATGGAGATGTGCCCTTCATCAACATAAAAAGGTACATAATAAAgacaaacattatttttgtgaCGTTTGTGGTTTCACAACGGCAGGGAAACGTATTTTAGAAAATCACATGAACGCGCATTCAAGGGAAACGATTTATAAATGTCAGTTTTGTGATTTTAAAAGTGCGTGGAAACGTTCCTTACAAATGCATACAAAAATGCATAGTGAAGAAAAAAGTTACAAATGTGAACTTTGTGATTTTAAATCGGCTTGGAGGCGCTCCTTGGTGTTGCACATGCAAGGGCACACAGGGGAGAAACGTTTTCATTGTAACTTCTGCGAATATAAAACTGcgcataataataatttacataaacatatgaaaacacatactggggaaaagccttttgaGTGTCCGCTTTGTCCACATCGAACTGCCCATAAAAGTTCATTGCGAACTCATATGAAGGTTCATGCAAAGGAAACCGTTCCTTTAGATATGGTTCTGAAATTAGAACAACCTAGTAGTGTTAGTTAA
Protein Sequence: MDVESVDIIVKQETMELDENKPTPEGHFALNPSKSDDLIKFIVDLASKTPNEEVTVEIDAEAIEMIMESQNVTNTDGGDKTFNCDKCKYEATSKTRLERHMQAHDTEMDVKNMIQDEESEESEGEVKPQQNKPKKLYGCEECDFTSPQKGGLKRHSLSHNSDKFFKCTECDFQTQYKGYLEKHSITHSKEKPFQCTQCDYTTSWKQCLTQHMVTHNKKEPFKCDKCDFTSTKKRIYGTHLKTHEVSALDAEYDPKPFKCEFCTYETAWKSALRAHLKTHTDEKDYNCEVCGFTTAYKRVLDWHLNIHTGEKTFKCDLCDFKSVWKRSVQMHKKTHNEEKPYKCEFCNFRSAWRRALVLHRHLHTGEKRFSCALCDYKTSHNSNFAKHMRSHTGEKPSKGKKAKKIEDKEPLVFEDWIEHQEDELTQNVEPSQNLGGNIEIQSLAAITSIVPETVLQENSIKEANPVSVEEEEVETMEEDVFVKPECATGEEPFQKLPKPECVTGEEPFQKSLKPDQKNLKSNKIYKCKECEYSTVWRCALHQHKKVHNKDKHYFCDVCGFTTAGKRILENHMNAHSRETIYKCQFCDFKSAWKRSLQMHTKMHSEEKSYKCELCDFKSAWRRSLVLHMQGHTGEKRFHCNFCEYKTAHNNNLHKHMKTHTGEKPFECPLCPHRTAHKSSLRTHMKVHAKETVPLDMVLKLEQPSSVS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -