Hnig019376.1
Basic Information
- Insect
- Hemicrepidius niger
- Gene Symbol
- -
- Assembly
- GCA_963082805.1
- Location
- OY720162.1:27202962-27206774[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.15 15 7.4 1.5 1 23 131 153 131 153 0.95 2 11 0.0021 0.21 13.3 0.8 1 23 365 388 365 388 0.90 3 11 0.00012 0.012 17.1 0.2 1 23 393 415 393 415 0.97 4 11 0.00052 0.052 15.1 5.2 1 23 419 441 419 441 0.97 5 11 0.18 18 7.2 1.5 2 23 444 466 444 466 0.93 6 11 7.5e-05 0.0075 17.8 1.6 1 23 471 494 471 494 0.97 7 11 0.00048 0.047 15.3 1.6 1 23 499 521 499 521 0.98 8 11 0.00027 0.027 16.0 0.3 3 23 529 550 528 550 0.93 9 11 0.05 5 8.9 0.9 1 13 563 575 563 579 0.91 10 11 0.43 43 6.0 0.2 1 16 591 606 591 608 0.92 11 11 2.8 2.8e+02 3.4 2.0 1 19 743 761 743 763 0.95
Sequence Information
- Coding Sequence
- ATGTTTACGAATGGAGTGGTTATTATGAACCACGGAAAGCAAAATATCGAAGCAGTGCCGAAGACCTTGCCGACGCATTTAGCCAAACTAGCGAATATACGACAATGCGAAGTCCGTTTAGTTAGGGATCCCTTATTTGAAATCCGTCTAGCTAGGGATCCCTTATTAATTCCAAAAGAAGAAATTGAGGTAAATCAGACGTCTTCAATTATTGAAACTTCCAATCAACAGACGATTCAGGCTTTACCACCTATAGTGCATGTAATTAAAATTGACGAGAACAATGATTTTATTGATAATAGTGTTCCTGAAGATCCTAATGAAGATAATGTCAGGAATATGGAAAGAGGGATAAATATTAATGAAGCAGGTTcagctaaacaaaataaatatacatgTGATATTTGTGATGACATTTGTACTACTGAAATGGAATTTAAACAGCATTTAGACTTTCATTTGGAATTAGATAATAGCAACGATGCACCGTCGGTGGCTTCATTGGATACACCCGCCTCTTTATCAGAAACCGTTGCTTTAGTAACGGATTCTTCTCTATCTTCACATAGTCCGTTAGAAAACACGCCGGTACTAACCGATAATTCAAAAGAAGGCAATGTAACGGAAGTAGTTGCAAATGATGTACATTCTATAGCCGAAAATATTCCAAGATCTCCTAAACCCATAGAAGCGACAGATGCAAATACGATGGTTTCATTGGATAACTCCCCTTCTTTGTCAGAAAACACGTCGACACTAACGAGTGAAACCGATAATACCAAAGGAGGTGATGTAACGGAAGCAGCTGCAAATGACGTAGTTTCTGTTGCTGAAAATACTTTAACATCTCCCAAGCTTTTAGAAACGATGGATGCAAATATGATTAATGTAGATCCACCGGTGCCAAATACCAAGGTGCCGCAAGCCGGTACTTCAAAATCAGAAAAACAACTGGCATACGCTGTCGCTAGAAGaaattacttaaaattattagaaacgTATAAAGAACTTCCGAAAATTCCTATAAGTCATTGTGATTGCCGGGAGAAAAAATTAGATACAAAATGTGAATTTTGTACTAAACGTCCAAAATATGTGTGTGGCAATTGTAAGAAAGAGTTTAAGTCATATCCAAAATTGAAGAACCATTTCGCCGAAGCACATAAATCGGCAAGATACTTTTGTCCACAATGTGGTCAGGGTTACACTGAAAAAGATCCATTAAGAAGACATATTGACCGCCATAGAGGACGTTTCGTTTGCAATAAATGTTCAAAGACTTTCGCTAAAAAATGCAATTACGAGAAACATACGGTGACACACAGAGCTAAATGTGATCAGTGTGGTAAATTATGTGGATCGACTACCGAGTTGAAAATTCATAAATTAGAGGATCACGAGGGTATAACGTATACTTGCGAAGATTGTAAAAAGACATTCAGTAAACGTGTACTTCTAGGGGCACATAAGAGGCAGTTTCACAAGACAGGGGAATATCCATGCACCCAATGTGAAAAGACATTCCAAAATTCAGTAACGTATGGGCGTCATATGTATAGGCACAGCAAAAACAAACCAGGAATTTGCGAAATATGCGGAAAAGAATTTAAATCACTGTTGTCATTGAAAAACCACAGAATATTAATGCACCCAAAAGATGGTGCCACattgaaagaaaagaaaaaattcgAATGCAACGTTTGCAACAAGCAATTTTCAACTTCTACCGGAAGAAAAGATTGTCAAAACAAACATGCCGGAATTGCAGAGTACAAATGTGACGTGTGCGACAATGCCTATTTTTATTGGAGTAGTCTATCAGTACAGATGGCGACATTAAAATTAGAAACTACGCCGAAACAGGAATATTGTATCTATAGTCCCCAGAAATCCGAACAGCTTTTTCCCATGGACCCATTGTTGATATCAGAACAGGAAGTTACAGAGAGTCAATTTACTTCTTCAATTATGACCCTTAATGATAGTCAACAAACGGCAGCCGATGTTTTCATCGAAGTTTTGGTACCGACAACACGACGGTCAAAACAAAAATACGTTGAACTCGGTAAACGCAAAAGAAAGGGTAATGTGGGAAATGAAATTAATGCCAATCAAGATGACAGAAGTGGTAGCGATGAAGAGTTTGTGTCTGATGCAAGTGGAGCCGCGCATTCGGGaagaaaggaaaataaaaacgaGAACGTTAATCAAAGTTTGCAAGATATATATAGATGCACTATTTGTGAAGACTTTTGTACCGACGAAAGAGAATTTAAACAGCATTTTGGAGTTTCACCAGTACCTATATAA
- Protein Sequence
- MFTNGVVIMNHGKQNIEAVPKTLPTHLAKLANIRQCEVRLVRDPLFEIRLARDPLLIPKEEIEVNQTSSIIETSNQQTIQALPPIVHVIKIDENNDFIDNSVPEDPNEDNVRNMERGININEAGSAKQNKYTCDICDDICTTEMEFKQHLDFHLELDNSNDAPSVASLDTPASLSETVALVTDSSLSSHSPLENTPVLTDNSKEGNVTEVVANDVHSIAENIPRSPKPIEATDANTMVSLDNSPSLSENTSTLTSETDNTKGGDVTEAAANDVVSVAENTLTSPKLLETMDANMINVDPPVPNTKVPQAGTSKSEKQLAYAVARRNYLKLLETYKELPKIPISHCDCREKKLDTKCEFCTKRPKYVCGNCKKEFKSYPKLKNHFAEAHKSARYFCPQCGQGYTEKDPLRRHIDRHRGRFVCNKCSKTFAKKCNYEKHTVTHRAKCDQCGKLCGSTTELKIHKLEDHEGITYTCEDCKKTFSKRVLLGAHKRQFHKTGEYPCTQCEKTFQNSVTYGRHMYRHSKNKPGICEICGKEFKSLLSLKNHRILMHPKDGATLKEKKKFECNVCNKQFSTSTGRKDCQNKHAGIAEYKCDVCDNAYFYWSSLSVQMATLKLETTPKQEYCIYSPQKSEQLFPMDPLLISEQEVTESQFTSSIMTLNDSQQTAADVFIEVLVPTTRRSKQKYVELGKRKRKGNVGNEINANQDDRSGSDEEFVSDASGAAHSGRKENKNENVNQSLQDIYRCTICEDFCTDEREFKQHFGVSPVPI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -