Hnig020524.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hemicrepidius niger
Gene Symbol
-
Assembly
GCA_963082805.1
Location
OY720163.1:3763140-3767348[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 4.7e-05 0.0047 18.4 4.2 1 23 568 590 568 590 0.98
2 11 0.98 98 4.8 2.5 2 23 597 618 596 618 0.97
3 11 0.0039 0.39 12.4 3.4 1 23 641 663 641 663 0.99
4 11 0.00077 0.077 14.6 5.5 1 23 669 691 669 691 0.98
5 11 0.27 27 6.6 0.1 1 23 697 719 697 719 0.98
6 11 4.8 4.8e+02 2.7 4.3 1 23 725 748 725 748 0.96
7 11 0.0013 0.13 13.9 2.0 1 23 854 876 854 876 0.97
8 11 0.00079 0.079 14.6 2.0 3 23 885 905 883 905 0.97
9 11 0.00056 0.056 15.0 2.5 1 23 911 933 911 933 0.99
10 11 1.8e-05 0.0018 19.7 1.0 1 23 939 961 939 961 0.99
11 11 0.01 1 11.0 0.4 1 23 967 989 967 989 0.98

Sequence Information

Coding Sequence
atgagtCAAATTTGTAGGACTTGTCTTGAAGTATACGAAAATGGATGTCAGTTGTTTAGCTTGGAGATCAACGAACCAATGTTCGATAGAATACATATTAAAACGAAACTTGAAGCTTGTGTACCTGAAATTGCTCTACATAGAGTACGAAACCCAGCTATATGTCGCTATTGTTTATTTGCTCTTAATACGGCATACgactttaaaacaaaatgccTTCAAACCGAAACAAGGATCTACAATTATATGACAACAGAAACAATCGACAGTCATGATTTAAACCGCATTGTTAAAAGAAACACCAACAACATATTTAACTGTGATATGATTAATCAAAACAGTCAGAGGAATGGAGAATCTCGTATTTTATTATCACCACTATCCTTATTACCACCGCCACCAACTGCGCCGTATCCTCCAATGCCACCTCCACCAACATTACCAACACTATCGTCACTTCAGTCGTTATCTGCACCACGACCAACAATACAGTCGAGACCCCCCTCACAAGTACAAACAGACACATTTTTCCAAACAAGATCACCATTATTAGACGGTGCATTACGATCAACAGGTACAATGTTCCAAGGATTAGATGGACCCCCAAGACCAACAGATCTACACCCACGTTTACAAGTAGAATCAGGACCACAAATAGTACAATCACGAGGACATTTAGAACAGAGATTACAACAGGTAGGAGCATCTTTTTCAGAAGGTTTTCAGGGAGGCTCACCATTTCCACAAACAAGTCCAAGATTTCAAGAAAGACCCCCTTATTTTACTTCTGGGTCTGGATATCATGATGGGCAACCATTTTCCCAAGGTTCATCGATATCTACTGGTCCAAGATATCATCAAGGACCTCCATTTTCACAAGGTCCTAGATATCAAGGGCCACAGTTTTTACAAGGCCCAACAGGTCCTAGATTTCAAATAGGACCACCATTTCAACAAAATTCAATACCACGGTTTCAAGTACCAGGCTCTTCACTATCATCAGGTATGCAATTACAAATAAGACCACCATTTTCAGAAGGTACACGATTTCAAGTAGGGCCAACATTTTCGCAAGGTTCAGCAATGCATACAGGTTTTAGATATCCACCGTTTTCACAAGGTCCACCATTATCAGCTAATCCCCGCTTGCAAATGGGTTCACCATTGCATTCAATTCGACAATATCAACAACAGCAACAACCAACAGGTTCGTTATTCCATGGAGGACCTTTGATACTAGAAAGTCCGAGATTACAAGCAAACTCCATAGGGTTAGAAAGACCACCAGTATCAACGGTAACTTCAACTCCAAATAATGTTTCGTTACAACCTCAAGGGGTATTGTTTCAAAGTGAATCACCGCGACTAGATGGTTCACTACAATTAAAAGGTCTTCCACTATCAGTAGGTCACCAATTACAAACAAGGCCACCGTTACCAGATATTCCAGCTTTACCAAAAGATCCACAATTACAAACAGGACCTCCATTATCAGAAGAGAGTCCATCACAATCATCAGATTCGCTACTACCAACAAGTCCAACAGTACCTGCAGATTCACAATTACCAACAAGTCAACAGTTAACATTTCCTTCCTTAACTTCCAGTTTTAGTAACACTTCATCCCCACTTCTTAGTTACCGATTATCTGAAAATGGTAGCAACACTTTTTTGTTGTTTGGTGCCGGTATTACTCCTACCTACAAATGTTCGGTTTGCCAGCAATGTTTTACTTCAAACAACCTTCTCAAAGAACATATGAACTATCATATTAACCCTGACGGTCTTAAATGCAGTATGTGTGACTTCCAGACCAATTCAACGGTTTGTTTGGATGAACATTTAAAAACCCATGATACTAGTCTTGTTGCTATGGATACCAGCACACCAACAGCGGATATACCTTCTACTGAGTCTTCTTATAAGTGCTTCAATTGTAATTATAGTACAACagataaaaattcatttaaggAACATAGAGCTACTCATGTGGGAGAGTCGGTGCATCAATGCGGATTATGTAACTTTAGATCAACACATTCTTCAAGTTTACGTAGGCATATGAAAGTTCATATGGGGGACAGACCATTCAGGTGTACCGAATGTCGATATGGAGCTGCAGATGAAATTTCCATACAAATACATatgaaaatacataaaaaagaACGACCACATAAATGCAGTGACTGTCCTTTTTCCGCATTAAAAAggagtaaattaaaaattcatttgttaAGATGTCATGGTAAAGTATTCGTACCCAATAATCAAGAGAATGAAGATCCAAGTTCGTCAACAGTGGATCCGTATCAAGTATCTTTGGATGACATCCATAACATTCTTCAAGGTGAAGATGATTCTTTAGATACACCGGAATGTAGTACAATAAAAGAAGCAACAAATACGGAACCTGAAATTACCCAAGATCCCTACATGATAACCGTAGAGGATATCCagaaaattttacaaagaaaagatgaaaatgataatgaaaatgaaattttaaatactggAACAGGACAAAATGATAATATTGTAGATGCAAATACTGGAAAAGTCTTCCGTTGCAGTACTTGTAAACAACAATTCAATTACATTTATTTACTTAGACGGCATATGGTGATTCATTCCTCCAATAATAAACCGCTTGATTGTCCGAAATGTGACTTCCGTACTACCATTAAAAGCCATTTACAGGTTCACTTGAAAACTCATACTGGTGGGAAAGTGTATCGGTGTGAAAAATGCGAGTACTCAACCATTTATTGGAGCAACATACAAAAACACCATAGAgtgcacactggggaaaagccttacaagTGTAGTGTTTGTGATTATAAAGCATCACAACAAACAACTTTAAAGGCCCATATGAATACACACGTTGAGAATTCTAGCTTTGAATGCACTCGATGTTCTTATACAAGTAACACGGAAGAGGAATTATTAACCCATATAGAAATGCATTCCATCGGTGGTCATTTTCTTGAGGATGgaattagtaataattttattgaagacAGTATCAAACGACATTttgcattaaataatattaccaaaaatttaagtaatttaaGTGAAGAACATTCCCAACTTACTCTTGAAGGTCttagtggtgaaaagccttccaagCTTCCCTCGAAAGGCTCAAGTTCTGATACACCTCAGCCTACTCCAGAAGGTTTAAGTGCTGGAGAACCTTCCCAAGTTGCTTTAAAAGCCCCAAATGCTGAAGAACCTTCCAAAGATCAAGGCACTGAAGAAGGCCTAAGTGCTAATTTAATTCACAAAGCTTCCAATAAAGAATTTATTCCAGAATCTACTCAGAATAATTGTGTTGTTAATGAATCTTCCCAGTCTTGTAATAATGTTAGTCCAGGAGGACTATCAAGTGATGTAATTCAGGGAACTTCCAATAATGAGTGTATCCAAGAAAGTAGCAATGAGATGATTACAGAATTACGTAATAATTGTGTTCCAGAATGTATTACTCAAGAATCtcctagaataattaataattttgttcctGATCATCTTGAAAATGGTTTTGTTCCAGAAGGGCCTATTAACAATCTTAAATCCAGTAGTGCAGGAACTCCTAATAATATTGTTCAGGAAGTtcttagtaaaaataattttattcaagaaaCTCCATGCTCTCCAAAGCCTCTTAAATCCAATATTGGTTCCAATAATTTTGTTGACGATCCTTTTAATTCCAGCAGTTTTATTCAGGAAGCTCCGAATTTCATTCAAGAATCTCAGAATAATAAAGAACGTTCTAGTAGTGGTTTTCTTCATGTCTTTAATCCTAACAGTTTTATTCAACAATCTCACAATTCTGATTATTTTACACGAACTTCCAATAATTTTGTTCATGaagtttttaattctaattttattcaAGAGGCTTGTAATAATAGTTTGAGTCAAAGATCTCGTAATCCTAATTCCAATGATGGTATTATTCGAGAAACTGCCAATAATAGTTATGTCCATGACATTTTCAATCCGAGTAGTAATTTCGTTCCACAAGCTCTAGGGAACTCTGTCATTTCAGAATCGTACAAACGGAATGAATATGTAGAAGGTGTTGTTAGTGATAAGATAACCAGTAAAATGAATTTTGTTCCACAGGAGGGAACTACTTAA
Protein Sequence
MSQICRTCLEVYENGCQLFSLEINEPMFDRIHIKTKLEACVPEIALHRVRNPAICRYCLFALNTAYDFKTKCLQTETRIYNYMTTETIDSHDLNRIVKRNTNNIFNCDMINQNSQRNGESRILLSPLSLLPPPPTAPYPPMPPPPTLPTLSSLQSLSAPRPTIQSRPPSQVQTDTFFQTRSPLLDGALRSTGTMFQGLDGPPRPTDLHPRLQVESGPQIVQSRGHLEQRLQQVGASFSEGFQGGSPFPQTSPRFQERPPYFTSGSGYHDGQPFSQGSSISTGPRYHQGPPFSQGPRYQGPQFLQGPTGPRFQIGPPFQQNSIPRFQVPGSSLSSGMQLQIRPPFSEGTRFQVGPTFSQGSAMHTGFRYPPFSQGPPLSANPRLQMGSPLHSIRQYQQQQQPTGSLFHGGPLILESPRLQANSIGLERPPVSTVTSTPNNVSLQPQGVLFQSESPRLDGSLQLKGLPLSVGHQLQTRPPLPDIPALPKDPQLQTGPPLSEESPSQSSDSLLPTSPTVPADSQLPTSQQLTFPSLTSSFSNTSSPLLSYRLSENGSNTFLLFGAGITPTYKCSVCQQCFTSNNLLKEHMNYHINPDGLKCSMCDFQTNSTVCLDEHLKTHDTSLVAMDTSTPTADIPSTESSYKCFNCNYSTTDKNSFKEHRATHVGESVHQCGLCNFRSTHSSSLRRHMKVHMGDRPFRCTECRYGAADEISIQIHMKIHKKERPHKCSDCPFSALKRSKLKIHLLRCHGKVFVPNNQENEDPSSSTVDPYQVSLDDIHNILQGEDDSLDTPECSTIKEATNTEPEITQDPYMITVEDIQKILQRKDENDNENEILNTGTGQNDNIVDANTGKVFRCSTCKQQFNYIYLLRRHMVIHSSNNKPLDCPKCDFRTTIKSHLQVHLKTHTGGKVYRCEKCEYSTIYWSNIQKHHRVHTGEKPYKCSVCDYKASQQTTLKAHMNTHVENSSFECTRCSYTSNTEEELLTHIEMHSIGGHFLEDGISNNFIEDSIKRHFALNNITKNLSNLSEEHSQLTLEGLSGEKPSKLPSKGSSSDTPQPTPEGLSAGEPSQVALKAPNAEEPSKDQGTEEGLSANLIHKASNKEFIPESTQNNCVVNESSQSCNNVSPGGLSSDVIQGTSNNECIQESSNEMITELRNNCVPECITQESPRIINNFVPDHLENGFVPEGPINNLKSSSAGTPNNIVQEVLSKNNFIQETPCSPKPLKSNIGSNNFVDDPFNSSSFIQEAPNFIQESQNNKERSSSGFLHVFNPNSFIQQSHNSDYFTRTSNNFVHEVFNSNFIQEACNNSLSQRSRNPNSNDGIIRETANNSYVHDIFNPSSNFVPQALGNSVISESYKRNEYVEGVVSDKITSKMNFVPQEGTT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-