Basic Information

Insect: Hemicrepidius niger
Gene Symbol: -
Assembly: GCA_963082805.1
Location: OY720168.1:16233703-16236074[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.00077 0.077 14.6 2.7 1 20 180 199 180 202 0.95

2 6 5e-07 5e-05 24.6 0.1 1 23 267 289 267 289 0.98

3 6 6.6e-05 0.0066 18.0 2.2 3 23 297 317 295 317 0.95

4 6 8.9e-06 0.00088 20.7 0.1 1 23 322 344 322 344 0.97

5 6 0.01 1 11.1 3.4 1 23 350 372 350 372 0.97

6 6 9.9e-05 0.0099 17.4 2.3 1 23 378 401 378 401 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.00077	0.077	14.6	2.7	1	20	180	199	180	202	0.95
2	6	5e-07	5e-05	24.6	0.1	1	23	267	289	267	289	0.98
3	6	6.6e-05	0.0066	18.0	2.2	3	23	297	317	295	317	0.95
4	6	8.9e-06	0.00088	20.7	0.1	1	23	322	344	322	344	0.97
5	6	0.01	1	11.1	3.4	1	23	350	372	350	372	0.97
6	6	9.9e-05	0.0099	17.4	2.3	1	23	378	401	378	401	0.97

Sequence Information

Coding Sequence: ATGGATTCGGAGCGGCTGTTTTCTCAGTCATGCAGAATTTGTTCAACTGAGCTCGAAAATGGCGTTTTGGTTTTTGGagaagaaggaaaaaaattgtatttacaaGCAAAAATTCGGAAATATCTATACATAACGgtgTCTGTAGAGGATAAGCTTCCAAAAATGATATGCGAAAATTGTTGTAAGAAATTAGAAGGCATTCATAAATTTGCTACAATGGCAGTAAAAATACaggataaatttaataaattagtgACTGATTCTTCTAATACTCtcaataataatgaaaataaagacATTGAAAATAAGGGTTTATTACATACATATCTAAcaaagGgcataaaagaaaaagaagaaataacAGAAATGGAAGTCAAAGTAGACCCAATGCTGGTACTTCAGTGTGCTTTAGAAGATGATTATTCTGAAGACGGAGCATCCGACACTGAAAGCTTAACTGAAAGTCAAACTTCAAGTGAAAAACTaatagaaactgaaaataattacgatGAATCCAAAGAAACCAATCGTAAACCATACAATTGCAGTTTTTGTCCCAGGTGTTTCACTTCAGAGTTTGCTCTACAAAGTCATATGTGGAATCACCTGCCCCAAAATAAACACATAGTGCTTCTCAACTTTAATAATTCTAATTGCGAATGGCAACAAAAGACAGATGAtagaaattgtgaaaaatatttaataaccaGAAGCTCTTCCAGTACTTCTAGTGAAGCCGAAACTTCCGAAAATGGTAATACTGAATATAATCATAATGAAAATGATAACAGTCTTCGTTTTACATGTCCAATATGTGGAAAAATCATATCTACAAAAGGCAATTTAAAAGTTCATCTTGAAACACATCGCCCGAAAGGAAAATATGGATGTGATATATGCGGAAGAATTTTCAAAACCCAATGTAATCTTTATCGCCATAAAGAATACCACGAAGGAATTCAGTTTCCATGTGGGGTTTGTGGTCGTGTATATCCCACAAATAGTACTTTGAGGGCCCATTCTATAACCCACAGTGACTTACGACCGCATAAATGTCCCCTTTGTATCAAGACTTTTAAGAGAAATCAAGACTTGAAGtttcaTATTAATCAACATACTGGAGCTAGACCATATCAATGCCCATATTGCCCAAAGGCATTTGCTAGTTCAGGAAATTGTTTTTCCCATCGAAAGCGTATGCATCCTCTAGAGGTGGAAAGAGACAGGGAAAAGGCAGCCAAGATAATGcgataa
Protein Sequence: MDSERLFSQSCRICSTELENGVLVFGEEGKKLYLQAKIRKYLYITVSVEDKLPKMICENCCKKLEGIHKFATMAVKIQDKFNKLVTDSSNTLNNNENKDIENKGLLHTYLTKGIKEKEEITEMEVKVDPMLVLQCALEDDYSEDGASDTESLTESQTSSEKLIETENNYDESKETNRKPYNCSFCPRCFTSEFALQSHMWNHLPQNKHIVLLNFNNSNCEWQQKTDDRNCEKYLITRSSSSTSSEAETSENGNTEYNHNENDNSLRFTCPICGKIISTKGNLKVHLETHRPKGKYGCDICGRIFKTQCNLYRHKEYHEGIQFPCGVCGRVYPTNSTLRAHSITHSDLRPHKCPLCIKTFKRNQDLKFHINQHTGARPYQCPYCPKAFASSGNCFSHRKRMHPLEVERDREKAAKIMR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00154000;
90% Identity: iTF_00978829;
80% Identity: -