Basic Information

Insect: Hemicrepidius niger
Gene Symbol: SCRT1
Assembly: GCA_963082805.1
Location: OY720165.1:18877067-18883287[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 2.9e-06 0.00029 22.2 3.7 1 23 268 290 268 290 0.99

2 5 0.085 8.5 8.2 0.1 3 23 301 321 299 321 0.92

3 5 1.4e-06 0.00014 23.2 0.6 1 23 325 347 325 347 0.98

4 5 4.7e-08 4.7e-06 27.9 0.6 3 23 355 375 353 375 0.98

5 5 1.8e-05 0.0018 19.7 1.1 1 21 381 401 381 402 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	2.9e-06	0.00029	22.2	3.7	1	23	268	290	268	290	0.99
2	5	0.085	8.5	8.2	0.1	3	23	301	321	299	321	0.92
3	5	1.4e-06	0.00014	23.2	0.6	1	23	325	347	325	347	0.98
4	5	4.7e-08	4.7e-06	27.9	0.6	3	23	355	375	353	375	0.98
5	5	1.8e-05	0.0018	19.7	1.1	1	21	381	401	381	402	0.94

Sequence Information

Coding Sequence: ATGCCACGCTGCCTCATGGCCAAGAAGTGGAAGGCTTATCCGTGGCCGGAGCGGCCGGATCCGCCGGAAGAAGAGGAAGAGGAGATTGACGTGGTGGGCGACTCTTCGGCAGCCTCGTGCTGGGGACCGTCCAGTCCCACTGCAGGGGCGACGGCCCCTAGCCCGCCGCCTACCTCACCGCACGGCACCACACTGCTCTACAACGGCTATCTTCAGGAACTCTCTCCCACAAGTTACACAACTACGTTTATTCAACGAAATGATCACCAAGTTTCCGTTCAATCACACCAGCCATCTTATGCGACACTAAGAACCGTGACAGAAAGTCAAGATTTACGGGCAGAGTACAACATTTCACCAATACCTCCACGTGGTCGCAAATCATTGGCGATGTGCTTCACTAGCACTGGTGCCGCTCTTTCACTTCCACCCAAGAAAAAAGACATATATCGACCTTATTCGTTGGACGACAGGCCGCCTCCACCTCCTCGAGTGCCTGCTGAAGAAGACTTACACGCAGCCCATGCAATACTTGATTTGAGTGCTTCGACAACCGTATTTTTACCGCCGCCTCCTTCACAGCCCTTGCAAATCGTGGAGCATAATCAATCTCAAAGAGAATCAACTCCATCGCCACCATTGAAACAGTCGGATTTATCGACGTTTCAATCAGCTAAAACAGTGGCTTATACATACGAAGCTTTCTTCGTTAGCGACGGACGGTCGAAGAAAAGGGTAAACGTCGATGAATCTGCTGGGGTTGTACAAAAACCTACAACTGGACCTCCGGACAAGCAAAAGTACACTTGTTGCGAATGCGGAAAGCAATACGCAACGTCCAGTAATTTGTCACGTCACAAGCAGACTCACCGAAGTCTGGATTCGCAGTCAGCCAAGAAATGTATAACTTGCGGTAAGGCATACGTTAGCATGCCGGCATTAGCTATGCACGTGCTAACACACAAGTTGCAACACAAGTGTGGGGTGTGCGGTAAGCAGTTTTCCAGACCGTGGTTGTTACAAGGACATCTACGGTCGCACACTGGTGAGAAGCCGTATGGATGCGCCCACTGCGGAAAAGCTTTCGCGGATCGTTCCAACTTACGCGCCCACATGCAAACGCATTCTGCGGACAAGAACTTCGAATGCCCGCGTTGCCACAAATCATTTGCTTTGAAGTCATACCTCAATAAGCATTTGGAATCCGCGTGTTTGAAGGACGAAACGGGTAGCGGTTCGGAGGATGGTGGTTCCAGGGCAGTGGAGGGTCCTCTGCCGATGAGGGTGCACGCGGGTTGA
Protein Sequence: MPRCLMAKKWKAYPWPERPDPPEEEEEEIDVVGDSSAASCWGPSSPTAGATAPSPPPTSPHGTTLLYNGYLQELSPTSYTTTFIQRNDHQVSVQSHQPSYATLRTVTESQDLRAEYNISPIPPRGRKSLAMCFTSTGAALSLPPKKKDIYRPYSLDDRPPPPPRVPAEEDLHAAHAILDLSASTTVFLPPPPSQPLQIVEHNQSQRESTPSPPLKQSDLSTFQSAKTVAYTYEAFFVSDGRSKKRVNVDESAGVVQKPTTGPPDKQKYTCCECGKQYATSSNLSRHKQTHRSLDSQSAKKCITCGKAYVSMPALAMHVLTHKLQHKCGVCGKQFSRPWLLQGHLRSHTGEKPYGCAHCGKAFADRSNLRAHMQTHSADKNFECPRCHKSFALKSYLNKHLESACLKDETGSGSEDGGSRAVEGPLPMRVHAG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00838921;
90% Identity: iTF_00399954; iTF_00978797;
80% Identity: -