Basic Information

Insect: Hemicrepidius niger
Gene Symbol: -
Assembly: GCA_963082805.1
Location: OY720162.1:27109050-27115833[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0022 0.22 13.2 0.3 1 21 199 219 199 222 0.90

2 15 0.00076 0.076 14.6 1.3 1 23 227 249 227 249 0.96

3 15 0.00034 0.034 15.7 1.3 2 23 254 275 253 275 0.97

4 15 0.82 82 5.1 1.9 2 13 278 289 277 291 0.88

5 15 3.4 3.4e+02 3.1 1.5 1 23 407 429 407 429 0.86

6 15 0.0012 0.12 13.9 3.6 1 23 435 457 435 457 0.98

7 15 0.00051 0.051 15.2 4.1 1 23 463 485 463 485 0.98

8 15 0.0014 0.14 13.8 2.8 2 23 493 514 492 514 0.95

9 15 1.7e-05 0.0017 19.8 1.3 1 23 519 542 519 542 0.96

10 15 0.0016 0.16 13.6 1.2 1 23 546 568 546 568 0.98

11 15 9.9e-06 0.00099 20.6 1.9 1 23 575 598 575 598 0.95

12 15 0.25 25 6.7 4.9 3 23 608 627 606 627 0.97

13 15 0.00012 0.012 17.1 3.7 1 23 633 655 633 655 0.98

14 15 3.6e-05 0.0036 18.8 1.3 1 23 661 683 661 683 0.97

15 15 0.0012 0.12 14.0 3.7 1 23 689 712 689 712 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0022	0.22	13.2	0.3	1	21	199	219	199	222	0.90
2	15	0.00076	0.076	14.6	1.3	1	23	227	249	227	249	0.96
3	15	0.00034	0.034	15.7	1.3	2	23	254	275	253	275	0.97
4	15	0.82	82	5.1	1.9	2	13	278	289	277	291	0.88
5	15	3.4	3.4e+02	3.1	1.5	1	23	407	429	407	429	0.86
6	15	0.0012	0.12	13.9	3.6	1	23	435	457	435	457	0.98
7	15	0.00051	0.051	15.2	4.1	1	23	463	485	463	485	0.98
8	15	0.0014	0.14	13.8	2.8	2	23	493	514	492	514	0.95
9	15	1.7e-05	0.0017	19.8	1.3	1	23	519	542	519	542	0.96
10	15	0.0016	0.16	13.6	1.2	1	23	546	568	546	568	0.98
11	15	9.9e-06	0.00099	20.6	1.9	1	23	575	598	575	598	0.95
12	15	0.25	25	6.7	4.9	3	23	608	627	606	627	0.97
13	15	0.00012	0.012	17.1	3.7	1	23	633	655	633	655	0.98
14	15	3.6e-05	0.0036	18.8	1.3	1	23	661	683	661	683	0.97
15	15	0.0012	0.12	14.0	3.7	1	23	689	712	689	712	0.97

Sequence Information

Coding Sequence: ATGTCGACATCAAAACAAGAAATTACGATAAAATATGAATGCAAGTACAACCCCAAGAATTACGACCTGGTTTCTAGCACGGATCCCTTGTTAATTTCAAACCAAGAAGTTACAGAAGATCAACTTACTTCTTCAATTATTAGTCTTAGTGACAGTCGACAAACGGCAGCTGATGTTTTTATCGAACCGACAATTCGAAGGTCGAAACATAAATTTGTTGAACTTCGCAAAAGCAAAAGAAAGCATAAtatgggaaaaaaaattaatagtaatCAAGATAACAAGAGTGGCAAAGATGAAGAGTTTATGTCTAACGTAAATGCTTATTCTAGAGAATcaagaaaaagtaaaagaacTACAGATGACATGGAAACTTTAATTAAGATTGAAGAAGAAGAATCGAGTTCGTCTTATTCTGTAGATGAACTTCTCCAGCCTAATTCGTTTAAGTCATCAAAAGCGCCGAAAATAACCCCACGTGCTATTGACGAAGAAAATTGTGTCGCGTCACTACCTAACATTCCTATAAGAAAATGTGATTGTcgcaagaaaaaattatatagaaagTGTAAATTCTGTGATGAATGTCCAAAATATGTATGTGAGAATTGcaaaaaagaatttatatcGTATCCACAATTGAAAGAGCATTTCGCCGATGTACATAAATCGGCAAAACATTTTTGTTCGGAATGTGGTCGTGGTTACGTAAAAAGAATAAATGCAGAACAGCATATGCGTCGCCATAAAGGACTTCTTACGTGTTATCAATGTTCAAACAGCTTCAAAACGAAACAAGAACTATGGAAACACCTTGCTACCCATAGAACGAAATGCAATGAATGtggaaaaatttgtaataacaaACAGGAgtccATAACCATTCAACAGCCGTTACTGCTTCTTACTTTACAACATCCACCCACTGTTGGATCGAACCAGAGGGTTGTTGCACTGCAGTTCATTGTAAAACCTGAATCAAACACCATTGATGGAGTCGCTCCCAATGCTGCTACTATTGAACCAAAATCTGCCTGTGCAGTACCTTTAATCAAAACTGACCCATGCCCTGACATTAAAAATGAATCTCAGAATATCGTTACCACCGATACGATGTTAGATGTTAGTAAAGGAGCAACATCGAAGGTTTCAATTAAAACCGAAAAAACCTCTAGGAATAATTCACAACCAGATTTAACTGATCCATTAAAGTCCCCATTTTTTTGCGAACCTTGTGGaaagcattttaaaataattagttacaTAACTCACTTACGAAATGTACATCCAAATCTCGAGAAATTTACTTGCAGTTTGTGCCAAGAATGTTTTGAAGAGAAAGATCTTTATTTCAACCATCTACGATCTCACAGCGCGGCAAAACCGCACACTTgcgaaatttgttttaaacctTTCATTTATAGTCATCAAGTTAAAAAGCATATGGTCACGCATTCTACTGAAAGACCAACCCTTAAATGTGAGTTATGCCAAAAAACCTTCACTTCAAAACATGGTTATCAATTACACGAATTATACCATACAAGTCGTCCTCACACGTGTACAATTTGTGGTAAAGCATTTGTGTATGACAGCTTTTTGAAAAAACACATTAATAAtgttcatataaaaaaatttgaatgcgATATATGTAAGGAGAAATTTCAAGCCCTTGGGACTTACAACAGACACAAACGTACTCACAAAcaatttattccaaattttgTCTGTCCAATATGTGGAAAACGTTTTGATTTGCAGTGTAATTTAAGGAAGCATACTATGTTAACTCACAACACAGACCCAGACATTAACTGCTTGTGTGACATATGTGGAAAAGTGCTAAGCAGGGACTGTTTCCAGAAGCACAAATTGACGCATACAGACGGTAAACCGTTTGAATGCCACACCTGTGGAAAAGCATTCAGGGCAAAAAGACATTTGGCGCTTCACTCCCAAACACATACTGGGGAAAGAAATCATCCTTGCTTAACATGCGGAAAGAAATATACTCAACGGACGCCATTAGTCATCCACATGAGAACTCACACTGGCGAAAGACCGTATAAGTGTGATTTATGTGAAAAAGGATTTGTTAGTCGATGTTTATTGAATACTCATAAAAACCGTAAACATAAACTAGTTCAGTAA
Protein Sequence: MSTSKQEITIKYECKYNPKNYDLVSSTDPLLISNQEVTEDQLTSSIISLSDSRQTAADVFIEPTIRRSKHKFVELRKSKRKHNMGKKINSNQDNKSGKDEEFMSNVNAYSRESRKSKRTTDDMETLIKIEEEESSSSYSVDELLQPNSFKSSKAPKITPRAIDEENCVASLPNIPIRKCDCRKKKLYRKCKFCDECPKYVCENCKKEFISYPQLKEHFADVHKSAKHFCSECGRGYVKRINAEQHMRRHKGLLTCYQCSNSFKTKQELWKHLATHRTKCNECGKICNNKQESITIQQPLLLLTLQHPPTVGSNQRVVALQFIVKPESNTIDGVAPNAATIEPKSACAVPLIKTDPCPDIKNESQNIVTTDTMLDVSKGATSKVSIKTEKTSRNNSQPDLTDPLKSPFFCEPCGKHFKIISYITHLRNVHPNLEKFTCSLCQECFEEKDLYFNHLRSHSAAKPHTCEICFKPFIYSHQVKKHMVTHSTERPTLKCELCQKTFTSKHGYQLHELYHTSRPHTCTICGKAFVYDSFLKKHINNVHIKKFECDICKEKFQALGTYNRHKRTHKQFIPNFVCPICGKRFDLQCNLRKHTMLTHNTDPDINCLCDICGKVLSRDCFQKHKLTHTDGKPFECHTCGKAFRAKRHLALHSQTHTGERNHPCLTCGKKYTQRTPLVIHMRTHTGERPYKCDLCEKGFVSRCLLNTHKNRKHKLVQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -