Hnig029997.1
Basic Information
- Insect
- Hemicrepidius niger
- Gene Symbol
- prdm10
- Assembly
- GCA_963082805.1
- Location
- OY720166.1:24734171-24744603[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 5e-06 0.0005 21.5 0.8 2 23 485 506 484 506 0.96 2 13 3.8 3.8e+02 3.0 3.3 2 23 538 561 537 561 0.78 3 13 0.0018 0.17 13.5 0.5 1 23 578 600 578 600 0.96 4 13 0.00073 0.073 14.7 0.4 2 23 612 633 611 633 0.94 5 13 0.00013 0.013 17.0 0.2 1 23 647 669 647 669 0.99 6 13 0.076 7.6 8.3 2.9 2 23 678 699 677 699 0.97 7 13 0.0076 0.75 11.5 0.5 1 20 706 725 706 728 0.94 8 13 0.0022 0.22 13.2 2.5 1 23 734 757 734 757 0.95 9 13 3.5e-05 0.0035 18.8 2.4 1 23 762 784 762 784 0.97 10 13 2.1e-05 0.002 19.6 2.0 1 23 790 813 790 813 0.94 11 13 0.021 2.1 10.1 1.1 1 23 849 872 849 872 0.97 12 13 0.0001 0.01 17.4 2.3 1 23 894 917 894 917 0.97 13 13 0.0026 0.26 12.9 2.6 3 23 957 978 956 978 0.97
Sequence Information
- Coding Sequence
- ATGGAAAGCACTATTGAAGGGCCCCCCGATGGTGGAGGTACCATAACCGTCACTAATTTTAGTAAAAGTACACCTTGGACAAGTACACAGACTGCAACATCTACAAATGAAAATtctacatttctttttattgcagttGAGTGTGTGAAAGACTCCAATGAGTATAAATTTACCCCTGAAGTTGGGTACTCTCCTCAGGGAACCCCACCCTGCACAAATTTTGAACAACATGTGAGCCCGCTGGATCCAAATATGAGTTCAGCAGCACGATATAGCCCTTCTAGTCCTTCCTGTACTGATGGAGATATTACATACAGTAATCCAGTAGTTGTACAGCAGTTAATATCGGCCACTTCCAATCAGCAGTTGCTGAGTACTACTAGAGACACTTTTGTTGATAATATATCGGGAACAGACCCAGCTCTTGAGGGCATATCAAGTTCCTTATCCACTTCTGATACTAATCTACTGAAACAAGTTGTTACCAATAGATATTTGTTGAATCAGCAAAATACACCTGCTACAGTTTCACCATCAGGTGTACTTCAATTAGTTCCAGATGCAGATACCGAACAAgaagttgaattattaattacagaCTTGGCTACTGGTATTTCATACAATGTTACCACTCAAGAATATCTTGTGGAAAGATGCCTTTCAGATGACCAGCAACTTTTGGATGCACTCACCCCTGGTCCGTTATTAGATTCCGATTTGTTAGCACTGGATGATTCAACTTTAAAATCTCAGTTACGAGATATTGTAGAGGCTGTTAATCCTTCAAGCGCGTTAGACTCGCAATCTCAAGTTCCTAATAATTCTATTGTAACCGCTGCAGCTGCTGGTCAGAATGTAACGCAGATTTTGATAAAAGATGAACAGTCAGAAGAGGATAGCGATGTTATTTATAGTCAAGACAATCTAAGACGGTCACAACGTCAAGTGGTTCTTCGATCCCCACAAAATGAAGAACAGTTACTGACCCAAGTTCATACAATCACTGACAAACCTGTGGAATCACGTGCAAAAGCAACTTTACCGGCAGCTTATTTGGCTATTATAAAAGACCCTGAAAGAGGGTATGGAGTATATGCGCGTAAAATGATCCCAAAGCGAACTCAATTTGGACCTTTGGAAGGTTTActtaatgttaataatcttcAAATAACCAACACTTCTTTACAATTACTTATAGAATGTGACAGAGGAATTATACATAGGTTGGACGTATCTGATGAAAATGTTGCAAATTGGATGGGTTTTGTGAGACAAGCCAAGACTTTCAGCGAACAAAATTTGCTAATTTCCCAACAAGGAAATTCCTTGTATTACACCACTACAACAAATATTTGGCCGAAACAGGAACTTCTTgtggGCTATAGTGCAGCATATGCAAAGAATTATAATCTTCCACTTTTGGAGCCAATAGCTCAGAAGGAAACTAACTGGCCATGTTTTGAATGCGATAAACATTTTTCAACATCAGATGAATTACAAACACATTTGAATGTTCATGATGTAATGAAAAAAGAAAGTGTTAAACTGAAAAAGaaggtctttaaaaataaacgaaagAAGTTAagaaggaaatttcaaaaacatataCTTGAATGTAAAGTTTGTAAAGCAACTTTCTCTCATCCTGAATATAGTATTTTAAGAAGACATTTGATGCTGCATGGAATTGGTTCTTGTGTGtcatttgaagaaaaatttactATTGTTAAgtACAACTGTGAAAAATGTGAAACTACATTTGAAACAGAAGCCCTTCTGAAAATACACAATTTACGGCACAGAGTGGATGTAGAAGAAATGCTGATAAATTTAGTTTGTCCTGATTGTCATAGTGAATTTACCACTCAGGAACAACTTATTGAACATGTTACCCAACATCGGAGTGATAAAACAATCCCTGATGCCAAAGGGGGGGGTTACAAATGTCctgtttgttataaaatatttgcatcTCTTGATCGGATACAAcgACATATGCTAGTCCACGGCTCAGAAGAATCAAAACCCTTAAAATGCGATACCTGCAACAAGagatttctaaataattctgcCCTCGCTTGTCATCTGAAAACTCACagtacagataaaaaaatattcgaatgTCCAATGTGTAAAGAAAGTTTCAATCACGTCTTACAATTAAAAGTTCATGTTCCACAGCATTGTGAAAATGGCAAGTACACTTGCCCACACTGcaaaaaagttttcaaagaGTACAGCATAATTAGAAAACACATCAGAGCTTTTCATTGTGATCGAAAACATAATTGTCCACATTGTGATAAACCATTTCCTACTTTGGATAAATTACGCATGCATTTGTTACGTCATTCGGATCATCGAGAATTTCTTTGTGCTGATTGTGGGAAACAGTTTAAACGTAAAGATAAATTGAAGGAACATACAAAGAGGATGCATTCTGAGGAGAGGGAGAATACTGTTCCCAAACCTACTAAAATAAACATGCAGAATATTAAAAGGTTTATACCTAAAGTACAACCTACAGATTATCAtcgatttatttataaatgtcaTGCTTGTCTCGTTGGATTTAAGAGAAGaggtatGCTTGTAAACCATTTAGCAAAACGACATCCTGACATTAGTCCAGAGTCGGTTCCAGAGCTTAATTTGCCGATTTTACGCACAACTCGTGACTATTACTGTCAATACTGTGACAAAGTTTATAAGAGCAGTTCTAAAAGAAAAGcacacattttaaaaaatcatcctGGCCAAGCATTGCCTATGAGTAACAGGCGTCAAGGTACCTTCCCAGAAGTAGCAGGATTGCCAAATCCTACTTTCTCACAAACTGTAGGGAGTATTACAACACATCCTCAGGCCTGCCAATGGTGTCATAAACAGTATGCTAGCAAGGCTAAATTATTACAACATCAACGAAAGAAGCATCTGGATTTATTGCAAGGTCAttcaaatcaaattaaaaatagtgtTCATCAAAATCAAATGGTTCCACAGAAACAGGATGTTGAAGAAATTGTTATCGATACACACAGTTTTAAAAGAGATTTTAAGGTATCGGATGAAGAACTATTGTCAGAAGTAGTGGCTTTAAATGATGATAGGGAAGATGAACAATATTACCATATTATTTCGGTGCCACCCAACGAATCTCTCAGTTTTAATCATTCTGCAGAACTCGGTCATACATCTGATTCACGCCTCTATCGTTTATTGACTACTGGAAATGgtCTGTTGCCTCCACGTTGA
- Protein Sequence
- MESTIEGPPDGGGTITVTNFSKSTPWTSTQTATSTNENSTFLFIAVECVKDSNEYKFTPEVGYSPQGTPPCTNFEQHVSPLDPNMSSAARYSPSSPSCTDGDITYSNPVVVQQLISATSNQQLLSTTRDTFVDNISGTDPALEGISSSLSTSDTNLLKQVVTNRYLLNQQNTPATVSPSGVLQLVPDADTEQEVELLITDLATGISYNVTTQEYLVERCLSDDQQLLDALTPGPLLDSDLLALDDSTLKSQLRDIVEAVNPSSALDSQSQVPNNSIVTAAAAGQNVTQILIKDEQSEEDSDVIYSQDNLRRSQRQVVLRSPQNEEQLLTQVHTITDKPVESRAKATLPAAYLAIIKDPERGYGVYARKMIPKRTQFGPLEGLLNVNNLQITNTSLQLLIECDRGIIHRLDVSDENVANWMGFVRQAKTFSEQNLLISQQGNSLYYTTTTNIWPKQELLVGYSAAYAKNYNLPLLEPIAQKETNWPCFECDKHFSTSDELQTHLNVHDVMKKESVKLKKKVFKNKRKKLRRKFQKHILECKVCKATFSHPEYSILRRHLMLHGIGSCVSFEEKFTIVKYNCEKCETTFETEALLKIHNLRHRVDVEEMLINLVCPDCHSEFTTQEQLIEHVTQHRSDKTIPDAKGGGYKCPVCYKIFASLDRIQRHMLVHGSEESKPLKCDTCNKRFLNNSALACHLKTHSTDKKIFECPMCKESFNHVLQLKVHVPQHCENGKYTCPHCKKVFKEYSIIRKHIRAFHCDRKHNCPHCDKPFPTLDKLRMHLLRHSDHREFLCADCGKQFKRKDKLKEHTKRMHSEERENTVPKPTKINMQNIKRFIPKVQPTDYHRFIYKCHACLVGFKRRGMLVNHLAKRHPDISPESVPELNLPILRTTRDYYCQYCDKVYKSSSKRKAHILKNHPGQALPMSNRRQGTFPEVAGLPNPTFSQTVGSITTHPQACQWCHKQYASKAKLLQHQRKKHLDLLQGHSNQIKNSVHQNQMVPQKQDVEEIVIDTHSFKRDFKVSDEELLSEVVALNDDREDEQYYHIISVPPNESLSFNHSAELGHTSDSRLYRLLTTGNGLLPPR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -