Hnig020385.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hemicrepidius niger
Gene Symbol
-
Assembly
GCA_963082805.1
Location
OY720163.1:2658072-2660982[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.0097 0.96 11.1 0.2 2 21 135 154 134 155 0.93
2 15 0.0013 0.13 13.9 7.9 1 23 160 182 160 182 0.99
3 15 2.4 2.4e+02 3.6 3.5 1 23 188 210 188 210 0.96
4 15 0.0002 0.02 16.4 3.1 1 23 216 238 216 238 0.99
5 15 0.0018 0.18 13.4 3.9 2 23 245 266 244 266 0.97
6 15 5e-06 0.0005 21.5 5.7 1 23 272 294 272 294 0.99
7 15 0.00022 0.022 16.3 7.9 1 23 300 322 300 322 0.99
8 15 0.046 4.6 9.0 3.4 1 23 328 350 328 350 0.98
9 15 0.087 8.7 8.1 0.5 1 20 472 491 472 493 0.94
10 15 0.0027 0.27 12.9 5.8 1 23 498 520 498 520 0.98
11 15 1.9e-06 0.00019 22.8 1.1 1 23 526 548 526 548 0.99
12 15 0.00052 0.052 15.1 2.9 1 23 554 576 554 576 0.98
13 15 0.00016 0.016 16.8 1.2 1 23 582 604 582 604 0.98
14 15 0.06 6 8.7 5.1 1 23 610 632 610 632 0.97
15 15 0.00035 0.035 15.7 10.4 1 23 644 666 644 666 0.99

Sequence Information

Coding Sequence
ATGATACCTAAACTATTGGGTTACTGTTTTGGAGGTTTTATATCAACTTCTTTATCAATTGGCCATAAATATAAAGCAAATATGAatgaaaatgaagaaattaaaCCTGAATTTCCAAGCGAGGCATGGTTACTCCATGTCGATACAAAGGACATACCTATTACGAACGTAATCAAAGAAGAATTTACTCCTACGGGGTTCAACATACACAtTAAACAAGAAGAGATCAACAGTGAAGGGTCGCTGAATTTTCCTCTAAAGTCTGAAATTCTTGATTTTAAGTTTGAAGCTGTAGACGTTAACCGATGCCTCCAGCTCAAGCCCTTGGTGAATgaggaattagaaataaaagatGAGAGCGATGCATATAAGAAGGAACTACTTCCCAAAACTGAAAGTTTATCCTGTAGTTTATGTGACGCCAAATTTGTATCAAAGAGGGTTTTACGGAAGCATCTGAACTTGGAAATAAATCAATACGAATGCAACAGATGTGATTATAAATGTATACGAAGATGTATGTTACGAAAGCATATGAAAACACATACAGAAGAAAAGtgttttaaatgtaatgtatgtaCTTACAGTAGTTTATTTAAATGTACTTTACTAGATCACCTGAAGATTCATACTGGTGAGAAGCCTTTTAAGTGTAGCGTTTGCGATTACCGAAGCATAcagaaatgtaatttattacaacacATGAAAATTCACAAGGGAGAAAAGCCTTTAAAATGTACTGAATGTGATTATAAATGTTTACATAAATGGAACTTGCAGGTTCATATGAGAATACACAcgggagaaaagccttttaaatgtgacGAATGCGATTATACGTGTATACAGAAAAGTCACTTAACACAACATATAAAAACTCATACTAAAGAGAAACCTTTCAAATGCACTCAATGTGATTATAGTTGCATACATAAAAGTCGCTTATCACGACATATGAAAACTCATACCGAAGAAAAACCGTTCATgtgtaatttatgtaattttaagaGCAAGCATAAAGCTGATCTACCAAGCCATATGAAGAAACATACAGGAGAAGCACCTTTTAAATGTAACCAAACTTCAATGAAAACCAGGATGGACTTCAGTGAAGATGTTAAACCAGAACTTATAAACCACATCTGGTTGCCCAGTACAAATAGTTATACATATGATGATTCACATGCGAATGGAATCAAGAAAGAATTTACATCTGCGGAGTTCAGTACAGACATTAAACAAGAAGAGGCTAACATTCAAGGATCCTTGAACTTTAACATAAAGCCAGAAATTCCTGATAATAAGTTTGGAATCTATGATGACGTACAAATTAAGGTCGAACCCTTCGAGTCTGAAGAATCACAAGCAAATAATGAGTCTCCACTAATAGAAACACTTCCTCAAGTTGAATATTTCTATTGTGCTTTATGTGAGATGAAATTTACCTCGAAGAATATTTTACGGAGGCACCTGTTCCTGGACGCAAAGTTATATCGCTGCAACAAATGTGATTATGAATGTATAAGAAAATGTATGCTACGACTACATATGGAGTCTCATAAAGGGAAGGAACGTTTTAAATGCAACGTATGTgatgttaaatttatattaaaaggtAACTTATCGCGACATATGAGAAGACATTTAAAGGAAAACCCTTTCAAGTGCAGtaaatgtgattatagatgtatGCAGAAGAATGATTTAATAGAACATATGGGAACTCACGTTGGAGAAAATCCATTCAAATGTAGCTTCTGTAATTACGGGGCTAGGGATAAATCCGATTTACGAACGCATCTGAAGATCCACACGGGGGATAAATTTTTCAAGTGCGGTCAGTGTCATTATAGATCTTTACAGAAGAGTCATTTAGTAACTCATATGAAAGCTCATACTTATGGGAcaccttttaaatgggAAAAACCTTATAAATGTACTAAGTGTAATCATAGATGTACACAAAGAAGTCATTTAGTATCGCATATGAAAACTCATGAGGAGACACGGCTTTAA
Protein Sequence
MIPKLLGYCFGGFISTSLSIGHKYKANMNENEEIKPEFPSEAWLLHVDTKDIPITNVIKEEFTPTGFNIHIKQEEINSEGSLNFPLKSEILDFKFEAVDVNRCLQLKPLVNEELEIKDESDAYKKELLPKTESLSCSLCDAKFVSKRVLRKHLNLEINQYECNRCDYKCIRRCMLRKHMKTHTEEKCFKCNVCTYSSLFKCTLLDHLKIHTGEKPFKCSVCDYRSIQKCNLLQHMKIHKGEKPLKCTECDYKCLHKWNLQVHMRIHTGEKPFKCDECDYTCIQKSHLTQHIKTHTKEKPFKCTQCDYSCIHKSRLSRHMKTHTEEKPFMCNLCNFKSKHKADLPSHMKKHTGEAPFKCNQTSMKTRMDFSEDVKPELINHIWLPSTNSYTYDDSHANGIKKEFTSAEFSTDIKQEEANIQGSLNFNIKPEIPDNKFGIYDDVQIKVEPFESEESQANNESPLIETLPQVEYFYCALCEMKFTSKNILRRHLFLDAKLYRCNKCDYECIRKCMLRLHMESHKGKERFKCNVCDVKFILKGNLSRHMRRHLKENPFKCSKCDYRCMQKNDLIEHMGTHVGENPFKCSFCNYGARDKSDLRTHLKIHTGDKFFKCGQCHYRSLQKSHLVTHMKAHTYGTPFKWEKPYKCTKCNHRCTQRSHLVSHMKTHEETRL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-