Hnig019705.1
Basic Information
- Insect
- Hemicrepidius niger
- Gene Symbol
- -
- Assembly
- GCA_963082805.1
- Location
- OY720162.1:32578518-32581389[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0064 0.64 11.7 0.3 2 19 30 47 29 49 0.94 2 14 0.034 3.4 9.4 0.3 3 23 75 95 74 95 0.93 3 14 5e-06 0.0005 21.5 1.7 1 20 152 171 152 173 0.93 4 14 0.0017 0.17 13.5 1.0 1 23 181 203 181 203 0.99 5 14 0.00016 0.016 16.8 1.1 2 23 210 231 209 231 0.96 6 14 0.00067 0.067 14.8 3.5 1 23 237 259 237 259 0.93 7 14 0.00022 0.022 16.3 2.2 1 23 265 287 265 287 0.99 8 14 0.0013 0.13 13.9 3.4 2 23 558 579 557 579 0.97 9 14 6.1e-05 0.0061 18.1 0.6 2 23 622 644 621 644 0.96 10 14 0.00024 0.024 16.2 0.4 1 21 654 674 654 675 0.94 11 14 0.00042 0.042 15.4 3.9 1 23 683 705 683 705 0.98 12 14 0.00021 0.021 16.4 1.4 1 23 711 733 711 733 0.95 13 14 0.00026 0.026 16.1 0.5 1 23 739 761 739 761 0.95 14 14 2.5 2.5e+02 3.5 2.5 3 23 769 789 767 789 0.93
Sequence Information
- Coding Sequence
- ATGGAAAATGCACCCCAAGACTCCTGTACAGatgaaaaaccaaaaaaaagcAACCCAAATTCTCATGAATCACACAAACCCATATTACAATGTAAATACTGTCCGAAGAAATATAAAATCTTGGGAACTTTAAGAAAACATGAAGAATGGTGTCCGCAAAAGAAAAATGTCTTGGTCGAAGAAAAGaataaagATGAGCCTACGGAAAAGAAAATTAACGCATGTAAAGAATGTggacaaacatttaaatatggAAAGATTCTCCAAAAGCATGAAGCCATGCATAAAAGTAAAAGTCCGTACTGGTGTAAATTATGCatggaaaattttccaaattatgaagaaaaagATAAAAAACGTAAATGTCGCATATGCCCAAACTTAAACTTCGCTTCGGAAGAAGAATATTTATTTCACATCACTGAGATACATAAAGGTAGTTACGATGATTATTACATGTGTAGTGATTGTGGGAAACAATTCAAGACAAAAAGTGAACTTACACAtcataataattcaaaatgtggcaCCGTTAAGCAATACAAATGCAAAATCTGTGAACAAGATTTAATGACTGCTGGTTCTTTACACAATCACATGCTTCGACATACAGGGGAAAGATGTTGCATGTGTGGATACTGCGGAAAAATGTTTCTTACTGCAGGGCAATTGAAAGTTCACGAACGTACTCATACCCAAGAAAAAGCATTCGTTTGCActgtgTGCGGTAAAGGTTTCTGTCACCGGCAAAGTTTAATCACCCACAGTACTTTACACACGGGAATTAAACCCTATCAGTGTGATAGTTGTGGGCAATCGTTTAGTTGTGTAGGTAATTTAATAAAGCATAGGAGAACCCATTCGGATACTTGTGGGGCAACTCCTCTTACAACTCATCGTGTTAATAATCCTTCAACTaaaatgaaagtaaaaattaacaCACCAAagaattctaaattaaaaatgatgaGGAAAGAACAAGAATTACAAGATAAATTAGcgatttataaagaaaaattaaatcggACATCAGAAAATGAAGGGAATCAGTCTAATAATAGTAGCGATGTTAAATTTCTACTTCCTAGTcaaaattctgattgtacttcaTATGAAAATAagactgttttaaaatttgatgtaAAAAATGAGACTGGTAAGGAAGAATTGTATGTTCCTAAAGGAATTTTAGAGAAAACTCTCGCAGATCCGCAGtttaatagAAGTTACATAAACAGTTCAAATGATCAAGaatcgaataaaaaattaaacggttgtcaattaaatttctttaaagtaCGTAATGACCTGCAAGTTCAAACTCAAGAAGAAAATGTGATCAATACAGAAATTAATCTTCCTGCTGTGGATATAAATAACACAGTTGCATTTGAAGATATTAATTATACTAAgaataatcaaaatattgttaaagaaacgTATTTGGGGCAAACCGAAGATTACTTTCTAGAAAACCAGGACGGAAATGATAATTACGAGTCCGAATCTTGTGAAGAGTTAGaggaaaaaattagaatttttgaaactaaatcaaagaaaaactctgagaaaaatattaaaaaaaataagaagagGAGAAAGGGAAAAGTAACGGAAACCGAAGTCGAAGAATTTATAGAACAAAGAGGCTTTAtTGGGACTAAAGAAGGTAAATGTAAGCACTGCAAGAAAATCTACACGAACTTACGTTGGTTATTCAGACATGAAAAAGAACACGAAAAGAAATCCTGTCAAATTCCCGTCAAATCAAAAAATCACTACAAATGCAGTTGCTGTAAAGTAGGATTTGAAACACGCGATGAATGCAAAGCCCACCAACAAAACATGCATGCAGAAATATTAActtGTCAGGATTGTGACAAACTCTTCTCAAACATCGATTCCTTACGTTCACATCAAAATATATTCCATAAAGGCCTTCCAAGGAAAATCTACGTGTATGTCTGCGAAAAATGTGGGCTTCAATTTCGTCAAAAAGCTTCCCTTACTTATCATGAAAAATCAAATTGTGGAACGGGACCGATTTACGAATGCCACGTTTGCGGGAAAGGCTTTAATAGTATGCATACACGTCGATCTCATTTACGTATACACGATCCAAAAAAGCGGTTCCTTTGTAAATTCTGTGGGAAAAGTTTTAGATGGAAAGGACAGCTTAAGATTCACGAACGCAGTcacactggtgaaaagccttttaaatgtttatattgtCCTAAAGCTTTTGCATATCGGGAAAGTTTAATTACGCATAGTAGTTTGCATACTGGGATTAAACCTCATCTTTGTCAAGCTTGCGGATCAAGATTTTCCTgtattggaaatttaattaaacatcgAGCTACACATGCTAGCACATGCGGGATTTGGTACGCCAAGAATCAGTaa
- Protein Sequence
- MENAPQDSCTDEKPKKSNPNSHESHKPILQCKYCPKKYKILGTLRKHEEWCPQKKNVLVEEKNKDEPTEKKINACKECGQTFKYGKILQKHEAMHKSKSPYWCKLCMENFPNYEEKDKKRKCRICPNLNFASEEEYLFHITEIHKGSYDDYYMCSDCGKQFKTKSELTHHNNSKCGTVKQYKCKICEQDLMTAGSLHNHMLRHTGERCCMCGYCGKMFLTAGQLKVHERTHTQEKAFVCTVCGKGFCHRQSLITHSTLHTGIKPYQCDSCGQSFSCVGNLIKHRRTHSDTCGATPLTTHRVNNPSTKMKVKINTPKNSKLKMMRKEQELQDKLAIYKEKLNRTSENEGNQSNNSSDVKFLLPSQNSDCTSYENKTVLKFDVKNETGKEELYVPKGILEKTLADPQFNRSYINSSNDQESNKKLNGCQLNFFKVRNDLQVQTQEENVINTEINLPAVDINNTVAFEDINYTKNNQNIVKETYLGQTEDYFLENQDGNDNYESESCEELEEKIRIFETKSKKNSEKNIKKNKKRRKGKVTETEVEEFIEQRGFIGTKEGKCKHCKKIYTNLRWLFRHEKEHEKKSCQIPVKSKNHYKCSCCKVGFETRDECKAHQQNMHAEILTCQDCDKLFSNIDSLRSHQNIFHKGLPRKIYVYVCEKCGLQFRQKASLTYHEKSNCGTGPIYECHVCGKGFNSMHTRRSHLRIHDPKKRFLCKFCGKSFRWKGQLKIHERSHTGEKPFKCLYCPKAFAYRESLITHSSLHTGIKPHLCQACGSRFSCIGNLIKHRATHASTCGIWYAKNQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -