Basic Information

Insect: Hemicrepidius niger
Gene Symbol: -
Assembly: GCA_963082805.1
Location: OY720166.1:13519930-13522328[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.11 11 7.8 0.1 2 19 119 136 118 139 0.93

2 14 0.0089 0.89 11.3 0.1 2 23 146 167 145 167 0.93

3 14 0.023 2.3 10.0 1.0 1 23 173 195 173 195 0.97

4 14 1.9e-06 0.00019 22.8 1.6 2 23 202 223 201 223 0.98

5 14 0.00079 0.078 14.6 4.8 3 23 339 359 337 359 0.95

6 14 0.017 1.7 10.4 0.8 1 19 367 385 367 388 0.95

7 14 0.00088 0.088 14.4 6.0 1 20 431 450 431 453 0.93

8 14 0.027 2.7 9.8 0.3 1 23 458 481 458 481 0.96

9 14 3.4e-06 0.00034 22.0 1.4 1 23 487 509 487 509 0.98

10 14 0.00013 0.013 17.0 1.8 1 23 516 538 516 538 0.98

11 14 0.00085 0.085 14.5 0.7 3 23 546 566 544 566 0.97

12 14 0.0012 0.12 14.0 0.3 1 23 572 595 572 595 0.94

13 14 0.0033 0.33 12.6 0.5 1 23 607 629 607 629 0.96

14 14 0.013 1.3 10.7 0.4 3 23 697 717 695 717 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.11	11	7.8	0.1	2	19	119	136	118	139	0.93
2	14	0.0089	0.89	11.3	0.1	2	23	146	167	145	167	0.93
3	14	0.023	2.3	10.0	1.0	1	23	173	195	173	195	0.97
4	14	1.9e-06	0.00019	22.8	1.6	2	23	202	223	201	223	0.98
5	14	0.00079	0.078	14.6	4.8	3	23	339	359	337	359	0.95
6	14	0.017	1.7	10.4	0.8	1	19	367	385	367	388	0.95
7	14	0.00088	0.088	14.4	6.0	1	20	431	450	431	453	0.93
8	14	0.027	2.7	9.8	0.3	1	23	458	481	458	481	0.96
9	14	3.4e-06	0.00034	22.0	1.4	1	23	487	509	487	509	0.98
10	14	0.00013	0.013	17.0	1.8	1	23	516	538	516	538	0.98
11	14	0.00085	0.085	14.5	0.7	3	23	546	566	544	566	0.97
12	14	0.0012	0.12	14.0	0.3	1	23	572	595	572	595	0.94
13	14	0.0033	0.33	12.6	0.5	1	23	607	629	607	629	0.96
14	14	0.013	1.3	10.7	0.4	3	23	697	717	695	717	0.95

Sequence Information

Coding Sequence: ATGGATGttaattctgaattaatttctGTGACGTCTGAAAATTTAGCATTAACAGATGGTAATATTTATGAGCAAATCTACTTAGATTTGAAACAAGACCCTGATGCACCTGTTCTAGACTGTAATTCAGTTCAAATGGAACACTTTGATCACACAACTGATGGtccattaaatataatatatgaACATGAACTTCCATTGCATCACGAGCAGGTAGAGTTTGCACCGAAAGAAGAGACCAGtatgattttaaattctaaTGCCACTGAGGATGAAAGTATGGCAGTTGAAGCTTTAAGACAACTGGGAAGCAGTGCTGTTCATACTAAGATTCCTCCCGATCTTCCCCTGTTGCCTTGTTCAAATTgtgatataaaatttcaaaccaCAGCTGATTTTCAGAATCATTCGGCTATTTGTAAACAAATCCTATTGAGATGTTACGTTTGTAATGAAATATTTGATCGGGCAGTAGACTTTAATAACCATTTAGTAGGTCATGCTGTTGATAGACCACACTCTTGTCGAATGTGTAGCATGTTATTTGTCCAGGAAAAAGATTTGATAGAACACTTACAGTCGCATGCATCTGCAGACACAAATCAATGTAAAGTTTGTGGCGTAACATTTCACAGACCATCCAGTCTAACAAACCATATGAAGATACATTCATATCAACCTGGAAGGgctattttaaattcttttgtgCTGCCTAAAGTTGAAGTTGAAAATTGTACCAGTATTTCTGATGACATTGATACTAAAGGGGTTACTTTGCCAAGTTTAAACAACTGGGAAGATTATGGATTTGCACGGTCTGACGATTTCTATGCTAATTTGGAAGTTGCACAAGAAATGACAATAAGTAATTTTGAAGAAGGTAAAAATAATATAGTAGCTGTATCTTATGAATTTCTAAATGATAAATCAGTAGGGCATGAGGAAGAAATTTCAAGTACAGAAGTAATTCCACCTCAAGCTTCACCTGAAGTTGAAAATAAACGACCACATTTATGTAAGTATTGCAACAAAAGCTTTGCACGTGAAAAAGCATTGCTTTCGCACCATAAATTACATTCCAGCATTTTACAAACGTTATATCAATGTAAATATTGTGATGGATGCCTTACTGATGAGGAATCGTTGAGCAAACATTCTTCAATTTGCGAAGAAAAAGTGCAGCAAAGCaacgaaaaaatattaaatattaacacaCCTAAAACTGATGTGCAAAATGTAGAAAAGCAACGTAGGGTGCTAATAGATAATCCAAAAGCCGAGTTTTATAAACATATTTGTACTCACTGTGAGAAACGATTCTCTACAAAGCAAAAATTGCACAGACACATGTGGATTCATCGGAAAAAAACTTTTTCATGTGAAATCTGTGCAAGTTCTTTTGAAAAACAAGAGGAGCTTGATTCTCATAGATTATCCACCCATCAAGGGAATTCAGCATACGTATGCAGCGAAtgcggaaaatgtttttcaagtcgacaagGACTTTGGGAGCACAACCGTATGCATGGTGAGACATCACATCTTTATAAATGCCAAGAATgttctaaaacattttcaagCCGCCAAGGTTACTTAATACATAAGCGAGCTCACAATGATGAAAGGCCATATGGCTGCCGTTTCTGTTGGAAATCATTTAGAGATGGTGGTACTTTAAGGAAACATGAACGTATTCATACAGGTGAACGTCCACATGCTTGTCCACTCTGTACTCGAGCTTTTAATCAAAAAGTTGTTTTACGGGAACATGTACGATGGTTACATACAGCCAATCGACAGCCTAATGAAAATGGAGTGTATGACTGTGTCATGTGTGAACAAAAATTATCAGACAAAGATGACCTCTGTGCTCATATTGTTAAACATAGTGACCATTTGGCATTGCTTGCCAAAGATGcatcaaagaaaaatataaaactggcGGCCAATTCAACGGAAACAAATAAAGGTGTTGTAAGGAagcacaataaaataaaaaatgaaagtaAAGTTATAATTGAAATTATACCAGCTGTTAACGcaaatagtaatttattaatcGAAGATGTTGAGAAACCTTTAATTAACTGTGAGCAATGTGgtgataaattttttaatgaacatGAACTAGCAGAACATGTACGAATTCATCTGTAG
Protein Sequence: MDVNSELISVTSENLALTDGNIYEQIYLDLKQDPDAPVLDCNSVQMEHFDHTTDGPLNIIYEHELPLHHEQVEFAPKEETSMILNSNATEDESMAVEALRQLGSSAVHTKIPPDLPLLPCSNCDIKFQTTADFQNHSAICKQILLRCYVCNEIFDRAVDFNNHLVGHAVDRPHSCRMCSMLFVQEKDLIEHLQSHASADTNQCKVCGVTFHRPSSLTNHMKIHSYQPGRAILNSFVLPKVEVENCTSISDDIDTKGVTLPSLNNWEDYGFARSDDFYANLEVAQEMTISNFEEGKNNIVAVSYEFLNDKSVGHEEEISSTEVIPPQASPEVENKRPHLCKYCNKSFAREKALLSHHKLHSSILQTLYQCKYCDGCLTDEESLSKHSSICEEKVQQSNEKILNINTPKTDVQNVEKQRRVLIDNPKAEFYKHICTHCEKRFSTKQKLHRHMWIHRKKTFSCEICASSFEKQEELDSHRLSTHQGNSAYVCSECGKCFSSRQGLWEHNRMHGETSHLYKCQECSKTFSSRQGYLIHKRAHNDERPYGCRFCWKSFRDGGTLRKHERIHTGERPHACPLCTRAFNQKVVLREHVRWLHTANRQPNENGVYDCVMCEQKLSDKDDLCAHIVKHSDHLALLAKDASKKNIKLAANSTETNKGVVRKHNKIKNESKVIIEIIPAVNANSNLLIEDVEKPLINCEQCGDKFFNEHELAEHVRIHL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00399817;
90% Identity: -
80% Identity: -