Hnig020389.1
Basic Information
- Insect
- Hemicrepidius niger
- Gene Symbol
- -
- Assembly
- GCA_963082805.1
- Location
- OY720163.1:2668204-2669682[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 5.7e-05 0.0057 18.2 5.2 1 23 105 127 105 127 0.99 2 11 0.00017 0.017 16.6 1.2 2 23 134 155 133 155 0.96 3 11 5e-05 0.005 18.3 1.7 1 23 161 183 161 183 0.98 4 11 2.7e-06 0.00027 22.3 1.2 1 23 189 211 189 211 0.99 5 11 6.5e-06 0.00065 21.1 4.6 1 23 217 239 217 239 0.98 6 11 0.0004 0.04 15.5 3.3 1 23 267 289 267 289 0.98 7 11 0.0013 0.13 13.8 2.5 1 23 295 317 295 317 0.99 8 11 1.8e-05 0.0018 19.7 3.7 1 23 323 345 323 345 0.99 9 11 0.00011 0.011 17.3 2.8 2 23 350 371 349 371 0.97 10 11 0.00018 0.018 16.6 6.0 1 23 377 399 377 399 0.99 11 11 0.0012 0.11 14.1 5.6 2 23 406 428 405 428 0.96
Sequence Information
- Coding Sequence
- ATGGATGTAGAGGATGATATCAAGCCGGAAGGGATAACTGAGATCTGGTTGTCCAACACTGATGATTACACATACGACGATTTGCAAGCGAACCAGTTTACAGAAGAGGAGTTGAACACTCGCATCAAACAAGAAGCCGTAGATTATCAATCATTGCTGTCGGACATAAAATTGGAAGCTCCTGATCTCCAAGAAGATATTAATATCGACTATAATTCCTTTATCAAAtcagaattattaataaaaaatgagtTGGATATAGAAACCGAAATTCCCAataatcaaaaagaaaattctCCTGAAACGAAACATTTTCAATGTGGTACGTGCAATTATAAATGTAGATATAATAGTAGTTTACAAAGACATATTAAAAGTCACACTCGAAAtagaatattaaattgtaatgaGTGCGATTATAAAACTACACAGAAGAATCGGTTGCAAATACACATAAGAAGTCACACTGGGGAAAGGCCTTTTCAATGTTCCGTTTGTGTTGCTAGATTTGCAAGAAAAAATCACTTAAAAGAGCATTTGAAAATTCATTTAGTGGATAAACCCTTTCAGTGTGACCAATGTGATTATGGTAGTACAAGGAAATCTACCTTACAAATTCATTTACGAACCCATAcaggggaaaagccttttcaatgCAGCGTATGTGATTGTAAATTTTCACGAAAGTATCTCTTACAGAATCATATGCTGTATCACACAAGAGAAAAGATTAAGTTAGAATCACAAACTTCTAACAATTTAGAACCAGTTTTAGATTTACAAACAGAGGAACCATGTTTCAAATGCGATCAATGTGACTATGTATCTCAACGCAAAGACAGCTTATGCCGACACGTGAAATTgcatacaggagaaaaaccaTACAAATGTAATGAATGTGATTCTAAATTTATACTGAAGTATCGTTTACAACAACATAAACTGACACATACATCGGACAAACTTTTCAAATGCAATATTTGTGCTTATAAATGTATCGACAGCAGTAAATTAAAGAAACATATCAGGACCCATACCAAGAAGTTGAAGTGTTCTGTATGTGATTTTAGGTGTATACAGAGAAGCACCTTGAAAGTACATGTCCGAACTCACACTGGTGAAAGGCCTTACAAATGTAGTGTGTGCGATCATGGATGTAGACACAAAAATCTTTTAGTAATACATATGAGAACTCATACTGCAGAGAAACCTTTGAAATGTAACGAATGTAACTTTAGATGTGTACAGAAAAAAACTTTAGAAAGACATACAAGAAGAAAACATGCTAACTAG
- Protein Sequence
- MDVEDDIKPEGITEIWLSNTDDYTYDDLQANQFTEEELNTRIKQEAVDYQSLLSDIKLEAPDLQEDINIDYNSFIKSELLIKNELDIETEIPNNQKENSPETKHFQCGTCNYKCRYNSSLQRHIKSHTRNRILNCNECDYKTTQKNRLQIHIRSHTGERPFQCSVCVARFARKNHLKEHLKIHLVDKPFQCDQCDYGSTRKSTLQIHLRTHTGEKPFQCSVCDCKFSRKYLLQNHMLYHTREKIKLESQTSNNLEPVLDLQTEEPCFKCDQCDYVSQRKDSLCRHVKLHTGEKPYKCNECDSKFILKYRLQQHKLTHTSDKLFKCNICAYKCIDSSKLKKHIRTHTKKLKCSVCDFRCIQRSTLKVHVRTHTGERPYKCSVCDHGCRHKNLLVIHMRTHTAEKPLKCNECNFRCVQKKTLERHTRRKHAN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -