Basic Information

Insect: Hemicrepidius niger
Gene Symbol: -
Assembly: GCA_963082805.1
Location: OY720167.1:25783695-25786552[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.014 1.4 10.7 1.4 1 21 215 234 215 235 0.94

2 10 0.048 4.8 8.9 0.9 1 23 248 270 248 270 0.98

3 10 0.0032 0.32 12.7 2.9 3 23 313 334 311 334 0.90

4 10 0.26 26 6.6 0.1 1 21 393 413 393 414 0.85

5 10 8.2e-06 0.00082 20.8 2.3 2 23 442 463 441 463 0.96

6 10 1.9e-06 0.00019 22.8 2.2 1 23 469 491 469 491 0.98

7 10 1.9e-06 0.00019 22.8 1.4 1 23 497 520 497 520 0.96

8 10 9.8e-08 9.8e-06 26.9 0.7 1 23 526 548 526 548 0.99

9 10 5.7e-07 5.7e-05 24.4 2.1 1 23 554 576 554 576 0.99

10 10 3.5e-07 3.5e-05 25.1 1.3 1 23 582 604 582 604 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.014	1.4	10.7	1.4	1	21	215	234	215	235	0.94
2	10	0.048	4.8	8.9	0.9	1	23	248	270	248	270	0.98
3	10	0.0032	0.32	12.7	2.9	3	23	313	334	311	334	0.90
4	10	0.26	26	6.6	0.1	1	21	393	413	393	414	0.85
5	10	8.2e-06	0.00082	20.8	2.3	2	23	442	463	441	463	0.96
6	10	1.9e-06	0.00019	22.8	2.2	1	23	469	491	469	491	0.98
7	10	1.9e-06	0.00019	22.8	1.4	1	23	497	520	497	520	0.96
8	10	9.8e-08	9.8e-06	26.9	0.7	1	23	526	548	526	548	0.99
9	10	5.7e-07	5.7e-05	24.4	2.1	1	23	554	576	554	576	0.99
10	10	3.5e-07	3.5e-05	25.1	1.3	1	23	582	604	582	604	0.97

Sequence Information

Coding Sequence: atggAAAGCTCTGAATCAAGTAGggaattattagaaaatgttaccATATCCGATGTAGGTGGCCCCCCGTTTATGATACAAAGAATGGCAGTCGATAATCCACAGCTTTTAAATACTGAATTATTATCGCATCACAGCGGTTTAGTTGTTGATTTAGGAGCCGGTGATTTTATTCCTGTTAATTATACTTCGGAGGATTTACTTACACAAGACTTAACAGAGGAAGATAGAAATTTAGCAGCTGCTTTAGTTGCGGTCCAACTTAGTCAACAACAAAAACAACAGCAACTACAACAGGATTCGTCTGGGGTTGTAATCGGCTCATCATTACCAAGTTTAGTTACTAATTCAGGTTTAGatGGTTCAAAAGTATCTTTAAGTGATGAACAATTAATCCTCACCGATAAAACGGCTAATGCTATTAACTCTGGTTACTTGCAAATAGTCGGAACTGATAATTTATATGAAAACTACGATGATAACCAACATATTAAATCGGAAGATGAAACAGATCCCCATATTAATCTAAAAGATTCGGATGGAGAAAATAAatctGATAATCGTTCGTCAAGAAAAAGTCTACCTCATAAAAAAAGAATATCTCGTAAATTAAAAAAGACAACTCCAATTTTACGGAGAATACATAAATGTACACTATGTGAACAAACATTTACTAGCGACGATTTTACTGAACATCAGCAAATGTGTAGAACGACTATAACACCAATCAATCCAGCTTTATTTAGTTGTCAATTATGCCAAGCTGGATTTCAGGATCAATTAAGTTTTTTCGAGCACTTAAAGAGTCATTATGAACCTCCGGTACAAGTTCAAATACAACCTGTTACTACAATTCCGGAGGACACGAAAGAAAGTTTACGTCTTCATCCGGACACGCCAAAAGATTCACTTTTATCCtctttattaaatttgcacTGCATTCATTGCAATAAAACTTTTCGAAGACAAAAGGCTTATGAGGCTCATGTAAGAGATGTGCATAACAAGGTGGAACTTAGTGAGTTCAGCGAACCGGAAGATTTAATGGCCGGGATTGATGTAGTAGTCGATACAAACGAACAAAATTCAGAAGACGACTCCAAAAGCtgGTCGAAGTACAGAGATGATGAGTTACATGCAACGGAAGAAGATTTACGTGAGCTTGAAGCACAGGATCATGTATGCCATATATGTAAGCAACCGTTTcctatgcgtgcgattttattACAGCATTTAATTACTTGTCGTACTACGAGCAATCAAACcgaaattaatttaaatggtcTGCCTAAAAAGAAAGTGAAAAAGAAGCAAGGGGAGCTGAATTGTACAGAATGTGATCGCGTGTTCACACATCGTAATTCTTTGGTTTATCATATGAGAAGTCATACAGGAGATCGACCACATCAGTGTGAACATTGTGGAAAGAGTTTTTTTGCGGCTAGTGCTCTTAAAGTTCACATGCGACTCCATTCAGgAGATAAACCTTACAAATGTGAAGACTGTGGAAGACATTTCCGTCAATGGGGGGATTTAAAATATCACACAATTTCTCTACATTCAGACCAAAAACAATACCAATGCGAGTACTGTGGAAAAGATTTTGCAAGAAAATATTCCCTCATTGTGCATCGTCGCatacacactggggaaaagaaCTACAAATGTGAATTTTGTGGTAAAACATTTAGGGCTTCCTCATATTTACAAAACCATCGGCGAATTCACACAGgaGAAAAACCTCATCCGTGTGATGTGTGCGGAAAACCATTTAGAGTAAGGTCGGATATGAAAAGACATATGAAAACTCATGGTCGGAGACGAATTAGTAGACCTTTAAATGTATCCCCTCCTTGTGAAGTGGTGGTTACTAAATTGGAAGAGTGTGAAAATACCGAAACGATTTTAGCTGACTCGGATGACACCAGCGAAAATCAAGTTCAGGAAAGTGAAAGCGCAGTTCAAGCTTTACAATACGATCAAGATCCTTTGGAATCTGTTCGGGATGGAAATACACTGTACACAAATGGGcatcaactttttgttttttatcaaGGTAATGACGTACCTCTACGTTCCATTGAAGCCACTTCCTCTTGGACTCAAACtagttaa
Protein Sequence: MESSESSRELLENVTISDVGGPPFMIQRMAVDNPQLLNTELLSHHSGLVVDLGAGDFIPVNYTSEDLLTQDLTEEDRNLAAALVAVQLSQQQKQQQLQQDSSGVVIGSSLPSLVTNSGLDGSKVSLSDEQLILTDKTANAINSGYLQIVGTDNLYENYDDNQHIKSEDETDPHINLKDSDGENKSDNRSSRKSLPHKKRISRKLKKTTPILRRIHKCTLCEQTFTSDDFTEHQQMCRTTITPINPALFSCQLCQAGFQDQLSFFEHLKSHYEPPVQVQIQPVTTIPEDTKESLRLHPDTPKDSLLSSLLNLHCIHCNKTFRRQKAYEAHVRDVHNKVELSEFSEPEDLMAGIDVVVDTNEQNSEDDSKSWSKYRDDELHATEEDLRELEAQDHVCHICKQPFPMRAILLQHLITCRTTSNQTEINLNGLPKKKVKKKQGELNCTECDRVFTHRNSLVYHMRSHTGDRPHQCEHCGKSFFAASALKVHMRLHSGDKPYKCEDCGRHFRQWGDLKYHTISLHSDQKQYQCEYCGKDFARKYSLIVHRRIHTGEKNYKCEFCGKTFRASSYLQNHRRIHTGEKPHPCDVCGKPFRVRSDMKRHMKTHGRRRISRPLNVSPPCEVVVTKLEECENTETILADSDDTSENQVQESESAVQALQYDQDPLESVRDGNTLYTNGHQLFVFYQGNDVPLRSIEATSSWTQTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00838857;
90% Identity: iTF_00399815;
80% Identity: -