Hnig019365.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hemicrepidius niger
Gene Symbol
-
Assembly
GCA_963082805.1
Location
OY720162.1:27123000-27125809[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0018 0.18 13.5 0.8 3 23 122 142 120 142 0.97
2 16 0.0037 0.37 12.5 1.8 1 23 148 170 148 170 0.98
3 16 1.6e-05 0.0016 19.9 0.5 2 23 184 206 183 206 0.96
4 16 0.43 43 6.0 1.5 3 23 214 232 213 232 0.92
5 16 0.064 6.4 8.6 3.5 1 23 275 298 275 298 0.96
6 16 1 1e+02 4.8 0.4 12 23 389 400 378 400 0.86
7 16 0.0002 0.02 16.4 0.6 1 23 479 501 479 501 0.95
8 16 0.0019 0.19 13.3 1.0 1 23 505 527 505 527 0.97
9 16 0.045 4.5 9.0 0.7 1 23 533 556 533 556 0.95
10 16 0.11 11 7.8 3.6 1 23 562 584 562 584 0.93
11 16 0.0027 0.27 12.9 0.9 1 22 590 611 590 613 0.90
12 16 4e-06 0.0004 21.8 2.6 2 23 621 642 620 642 0.97
13 16 1.2e-06 0.00012 23.4 0.5 2 23 648 669 647 669 0.97
14 16 2.7e-05 0.0027 19.2 1.8 1 23 675 697 675 697 0.98
15 16 8.5e-05 0.0085 17.6 0.3 1 23 703 725 703 725 0.97
16 16 0.0021 0.21 13.3 0.2 1 21 731 751 731 752 0.95

Sequence Information

Coding Sequence
ATGGATCATCTTCGTGGACAACATAGTCAACAGTCGGCcagtttccataaaattttcagtGCCGCTATTTCGGATGTAAAAAATGATTTGATTTTCACAAATGAAACAATTAAAGATGAACCGAGCAACCCAATATCAACCACTTCAAAAGGTTTATTCAAAGTTATAGTACCTCCTGGATTTCTGACGTCAAGTCCAAAATATTTGAGCGTTAATAATACACTTATACCTTTAGTTGTAACACCAATCCAAGAAACTTCAGTGACCAATAGTCAAACTGCACGCATTAATTTTCCAAATGCGGGACTGACTCCGCTTAAAATAGAGCAACAGGATGTCGACGttagtaatttcaaatattggTGCGAAATTTGCGACGAACGTTTTTGTTTTCCCAATTTATTCCAAGATCATATAAATTTACATGCCCGTATAAAACCTTACGAATGTAAAGTATGCCGAAGGAAATTCGCAACCATGTTACATTTAGGGACGCACATGGAAAATCATTCCGATGATGATGTCGGTGTTGATGGAAAAAGATTGTTGAAATGTTCTATATGTGGAAAGTTCACCAAAGGTCCTTCATTTTTACGTAAACACATGAAAGTGGCTCATgaaaaaagagaaaaagaaTTATGTGATATCTGTGGAATAGAATTTGTTCATTTACAAAATCACATCAAGAAAAAGCATATAAAGGCGTCTAAAAAATCACGCAACCAAATAGAGCAACATTTTTTAGACATCTGTCGAATAAAACTTGAaatggaagaagaagaagcagCGGAGAATTTAAAGAGTGGCCTGAAGAAAAAGTTACACAAGTGTACTTTGTGCAGAGAAAGTTTTTTTACTGTGCTTGAGTTACAAGCCCATCACGACACGCAACATCCTATTTTGGGTAAAAGACGGCCGGTGCCAAAACAAAGACCTGAAATAATTTCGGTTAATTCAACCGATAGTAGTGACGCCGATGCTGGTCATTTATTATTAAGCGATGACAGCGACGACGATGAAGACGAATTGGAGATCGTACTAGGTGATAATATATCCGTTGCTTCTGAAGAACTGAAAAAAATCTATGCTTCTAAATCGGATACTGATCAAAGTTCACAAAATATTGATGTATTTTGTGTAATATGCGATAACGGAAAGAAAATGACTCAACAACAATTAACACGGCACTACAGAAAGCACGAAAAACTGTTTGCCAGTTTTAACGCAGTCACTTTTGCAAAACTCAAAGAAGAACCTAAGATTGAGGAATCAGATACGCAATACTACTGTCATATTtgtaaagataataaaaaaatgactaaAGAGGAATTACATGAACATTATGAAGCCAATCATGACACGAAAATTACCAATAAAAAGCAGTTTTTTCGTAGAGCTCGTTCCAAACGCCCACGTTCACCTAGACCCGAAGTATTCCGATGCGAAATTTGCTCGGAAGAGTTTGGCACGcagcaaaatttaaataaacacttCGAAGAGCATGATAATCAATATTCATGTGATATTTGCGACAAGGGTTTTAAGAAACTGATTGATTACACCTTCCACATGCAAAGCCATAGCGATGACAAGTTGTATAAATGCCCGTTATGCCAGTTCGTTACCGACAAAAGTTATTTGGTAAAGTCTCATCTGTATTCAGTGCACGAtcagtttaaaaaatacaaatgtgACATTTGCAGTAAAGGCTTTGCCATTTTCACACACTTCCAAGAGCATAAATACTTCCATACaggggaaaaaccttttcggTGTGACATTTGTGGACAGAAGTTTATGTACACTCGATATTTAAACGCCCACAAAGTTCAGATGCACAAGAATGCCCAAAAAGGAGTCGAGTGCACCATCTGCAAGAAAGTGTATTCGCACAGGAATAGCCTTAACACTCATATGAGGTCCCATACTGGTGCTGTATCAGTATGCGATGTTTGCGGAAAAACGTTTAGTAGCAACGAAAAGTTGCGCCTGCATTACCGCATCCATACAGGCGAGAAGCCATACAAGTGCGATTACTGCGAAAAGACATTCAAAACAAGTTCGTACCGAGCAGAACATGAAAGGATCCATACCGGTGAGAAGCCGTACGAGTGCCCCTATTGTGAAAAAGGTTTTTCCCAGCGTACCAGCATGGTTATACATTCGCGTGGCCATACCGGCGAGAAACCTTATGTTTGTCATTTATGTAATAAAGGTTTTGCTGCAAAATCTATGGTTACTGTTCATTTAAAGTCTTGTAAAGGTGGTATTGTACATCATATTGAAGATGATTAA
Protein Sequence
MDHLRGQHSQQSASFHKIFSAAISDVKNDLIFTNETIKDEPSNPISTTSKGLFKVIVPPGFLTSSPKYLSVNNTLIPLVVTPIQETSVTNSQTARINFPNAGLTPLKIEQQDVDVSNFKYWCEICDERFCFPNLFQDHINLHARIKPYECKVCRRKFATMLHLGTHMENHSDDDVGVDGKRLLKCSICGKFTKGPSFLRKHMKVAHEKREKELCDICGIEFVHLQNHIKKKHIKASKKSRNQIEQHFLDICRIKLEMEEEEAAENLKSGLKKKLHKCTLCRESFFTVLELQAHHDTQHPILGKRRPVPKQRPEIISVNSTDSSDADAGHLLLSDDSDDDEDELEIVLGDNISVASEELKKIYASKSDTDQSSQNIDVFCVICDNGKKMTQQQLTRHYRKHEKLFASFNAVTFAKLKEEPKIEESDTQYYCHICKDNKKMTKEELHEHYEANHDTKITNKKQFFRRARSKRPRSPRPEVFRCEICSEEFGTQQNLNKHFEEHDNQYSCDICDKGFKKLIDYTFHMQSHSDDKLYKCPLCQFVTDKSYLVKSHLYSVHDQFKKYKCDICSKGFAIFTHFQEHKYFHTGEKPFRCDICGQKFMYTRYLNAHKVQMHKNAQKGVECTICKKVYSHRNSLNTHMRSHTGAVSVCDVCGKTFSSNEKLRLHYRIHTGEKPYKCDYCEKTFKTSSYRAEHERIHTGEKPYECPYCEKGFSQRTSMVIHSRGHTGEKPYVCHLCNKGFAAKSMVTVHLKSCKGGIVHHIEDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00789648;
90% Identity
-
80% Identity
-